Rh6BG218000

DnaJ C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000572
Physical Location & Seq
Forward (+)
41134829 .. 41135355
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG218000.1

Sequence Viewer

Length: 315 bp
ATGTACCATGCTAGCAATAAATATAAGGGTACTGGAGAGACCATCAGTGACAAGGATTGCTGTGGACAGTGCAAGGGAGAGAACGTTGTTCAAGAAAAGAAAGTTTTAGAAGTCCATATGGAGAAGGATATGCAGAATGGACAGAAGATTGCATTTCCTGGTGAAGCAGCTATACTTATCAAATCCGACCATGGTGAAGTTGTGAAGCCTGATTCGTCTAAGGCCATCAATGATGAGGATCAAGGCTTTGGAAGCTGCCCTTCCATCAAGCGCATCATCTCAGCAGCTAACAAGCTAAGATATGGAGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

7.66

Isoelectric Point (pI)

22.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 84
AclWI GGATC 1 cut(s) 246
AfaI GTAC 2 cut(s) 5, 31
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 4 cut(s) 170, 255, 287, 295
AluI AGCT 4 cut(s) 170, 255, 287, 295
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 167, 255, 284
AspLEI GCGC 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 173, 206
AsuNHI GCTAGC 1 cut(s) 11
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbvI GCAGC 3 cut(s) 179, 242, 296
BccI CCATC 3 cut(s) 50, 233, 272
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 168, 256, 285
BlsI GCNGC 3 cut(s) 169, 257, 286
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 282
BmtI GCTAGC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse1I ACTGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 237
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 3 cut(s) 179, 242, 296
BshFI GGCC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 190
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 293
BspOI GCTAGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 3 cut(s) 219, 280, 296
BstDSI CCRYGG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 179, 242, 296
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 52, 74
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 4, 30
CviAII CATG 2 cut(s) 8, 191
CviJI RGCY 7 cut(s) 170, 208, 224, 246, 255, 287, 295
CviKI_1 RGCY 7 cut(s) 170, 208, 224, 246, 255, 287, 295
CviQI GTAC 2 cut(s) 4, 30
DdeI CTNAG 3 cut(s) 219, 280, 296
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 11, 194
FaiI YATR 8 cut(s) 9, 24, 117, 119, 131, 173, 192, 303
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FatI CATG 2 cut(s) 7, 190
FauNDI CATATG 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 168, 256, 285
Fsp4HI GCNGC 3 cut(s) 168, 256, 285
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 168, 256, 285
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 224
HhaI GCGC 1 cut(s) 273
Hin1II CATG 2 cut(s) 11, 194
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HinfI GANTC 1 cut(s) 212
HphI GGTGA 2 cut(s) 173, 206
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 118, 270
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 72, 133, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 3 cut(s) 219, 280, 296
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 11, 194
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 18, 144, 171, 222
Lsp1109I GCAGC 3 cut(s) 179, 242, 296
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 252
NcoI CCATGG 1 cut(s) 190
NdeI CATATG 1 cut(s) 117
NdeII GATC 1 cut(s) 238
NheI GCTAGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 11, 194
NmuCI GTSAC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 3 cut(s) 169, 257, 286
Psp1406I AACGTT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
RsaI GTAC 2 cut(s) 5, 31
RsaNI GTAC 2 cut(s) 4, 30
SatI GCNGC 3 cut(s) 168, 256, 285
Sau3AI GATC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 159
SetI ASST 5 cut(s) 87, 172, 257, 289, 297
SfaNI GCATC 1 cut(s) 282
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 1 cut(s) 87
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 2 cut(s) 52, 74
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 3 cut(s) 167, 255, 284
Tsp45I GTSAC 1 cut(s) 47
TspRI CASTG 2 cut(s) 52, 74
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.