RLG00000007108

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000572
Physical Location & Seq
Reverse (-)
13620281 .. 13621237
957 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007108

Sequence Viewer

Length: 789 bp
ATGAGACGAGCGATTACACCACCAAGTCGGAAGGCTGGAGGCAAGAGAAGGGGAGAGGATGGGATCTATCACCTCAAGGCTTCTCTTGAAGATCTCTACACCGGCACAACCAGAAAGCTTGCTGTCACTCGCAACAAGATCTGCACCAAGTGCAAGGGCAAAGGGTCAAAGTCAGGTGCTTCAAGGACGTGCCGTGGTTGCCAAGGGCATGGTTATAAAGTCATTGTACGCCATTTAAGCCAAAATTTGACGCAGCAAACGCAGCACTACTGCTATGAGTGCAAGGGCACTGGCCAGACCATTCGTGCCAAGGACCGCTGCCAGCAGTGCAAGGGTGACAAGGTTGTGCTGGAGAAGAAAATATTGGAAGTCCACGTGGAGATAGGAATGAAAAACGGGCAGACGATCATATTCCCTGGCGAAGCTCACCAAGGGCCTAATACCATCATAGGTAATATTGTTATTGTCATCCAACAGTTGACACATTTGGACGGTAGGCAGCTTCTGATTAAGTCTCAACCTGGAGAAGTTGTCGACCCTAATCAGTGCAAAGCTATACATGATGAAGGCATGCCAATCTACTCGAATCCATTTATTAAGGGCAAGTTGTATGTCCAGTTCACTTCACCGCTTACTGATAAGGAGCCAGACGAATGCGATGAGACTTCGCTGTATGATGTGAACATGGAGGACGAAATGCGAAACAAGAAAGCAAATCAGTCTCAAGAGGCATATGAGGAAGATGAGGACATGCATGGTGATGCCGGTGTCCAATGCGCTCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

263

Amino Acids

29.29

Weight (kDa)

8.56

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 23 - 162 4.4e-12 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 48 - 114 5.3e-13 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccI GTMKAC 1 cut(s) 534
AciI CCGC 2 cut(s) 316, 629
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 244
AcvI CACGTG 1 cut(s) 376
AdeI CACNNNGTG 1 cut(s) 150
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 2 cut(s) 89, 183
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 2 cut(s) 415, 520
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 4 cut(s) 118, 425, 502, 554
AluI AGCT 4 cut(s) 118, 425, 502, 554
Alw26I GTCTC 3 cut(s) 519, 656, 726
AlwI GGATC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 505
AoxI GGCC 2 cut(s) 292, 434
ApeKI GCWGC 4 cut(s) 253, 262, 318, 499
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 779
AspS9I GGNCC 2 cut(s) 313, 434
AsuHPI GGTGA 5 cut(s) 62, 347, 419, 618, 770
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 376
BbvI GCAGC 4 cut(s) 265, 274, 305, 511
BccI CCATC 2 cut(s) 53, 452
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 2 cut(s) 417, 522
BcoDI GTCTC 3 cut(s) 519, 656, 726
BglII AGATCT 2 cut(s) 91, 138
BisI GCNGC 4 cut(s) 254, 263, 319, 500
BlsI GCNGC 4 cut(s) 255, 264, 320, 501
Bme1390I CCNGG 2 cut(s) 417, 522
Bme18I GGWCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 313, 434
BmiI GGNNCC 1 cut(s) 645
BmrFI CCNGG 2 cut(s) 417, 522
BmsI GCATC 1 cut(s) 751
BpmI CTGGAG 3 cut(s) 57, 371, 543
BpuEI CTTGAG 2 cut(s) 59, 708
BsaAI YACGTR 1 cut(s) 376
BsaJI CCNNGG 5 cut(s) 193, 202, 309, 415, 430
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bse118I RCCGGY 2 cut(s) 101, 764
Bse1I ACTGG 2 cut(s) 295, 616
BseBI CCWGG 2 cut(s) 417, 522
BseDI CCNNGG 5 cut(s) 193, 202, 309, 415, 430
BseGI GGATG 2 cut(s) 64, 468
BseNI ACTGG 2 cut(s) 295, 616
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 4 cut(s) 265, 274, 305, 511
BsgI GTGCAG 1 cut(s) 127
BshFI GGCC 2 cut(s) 294, 436
BsiSI CCGG 2 cut(s) 102, 765
BsmAI GTCTC 3 cut(s) 519, 656, 726
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 2 cut(s) 294, 436
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 4 cut(s) 63, 91, 138, 405
BspACI CCGC 2 cut(s) 316, 629
BspANI GGCC 2 cut(s) 294, 436
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 101, 764
BsrI ACTGG 2 cut(s) 295, 616
BssAI RCCGGY 2 cut(s) 101, 764
BssECI CCNNGG 5 cut(s) 193, 202, 309, 415, 430
BssMI GATC 4 cut(s) 63, 91, 138, 405
BssT1I CCWWGG 3 cut(s) 202, 309, 430
Bst2UI CCWGG 2 cut(s) 417, 522
Bst4CI ACNGT 2 cut(s) 477, 494
BstAPI GCANNNNNTGC 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 3 cut(s) 120, 323, 572
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 2 cut(s) 64, 468
BstHHI GCGC 1 cut(s) 779
BstKTI GATC 4 cut(s) 66, 94, 141, 408
BstMAI GTCTC 3 cut(s) 519, 656, 726
BstMBI GATC 4 cut(s) 63, 91, 138, 405
BstMWI GCNNNNNNNGC 7 cut(s) 150, 198, 237, 259, 262, 279, 327
BstNI CCWGG 2 cut(s) 417, 522
BstNSI RCATGY 2 cut(s) 574, 754
BstSCI CCNGG 2 cut(s) 415, 520
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 4 cut(s) 265, 274, 305, 511
BstX2I RGATCY 3 cut(s) 63, 91, 138
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 3 cut(s) 63, 91, 138
BsuRI GGCC 2 cut(s) 294, 436
BtgI CCRYGG 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 672
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 64, 468
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 3 cut(s) 288, 332, 551
Cac8I GCNNGC 3 cut(s) 120, 323, 572
CaiI CAGNNNCTG 1 cut(s) 505
CfoI GCGC 1 cut(s) 779
Cfr10I RCCGGY 2 cut(s) 101, 764
Cfr13I GGNCC 2 cut(s) 313, 434
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 227
CviAII CATG 6 cut(s) 209, 560, 571, 685, 751, 755
CviQI GTAC 1 cut(s) 227
DpnI GATC 4 cut(s) 65, 93, 140, 407
DpnII GATC 4 cut(s) 63, 91, 138, 405
DraIII CACNNNGTG 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 3 cut(s) 202, 309, 430
Eco47I GGWCC 1 cut(s) 313
Eco72I CACGTG 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 415, 520
EcoT14I CCWWGG 3 cut(s) 202, 309, 430
EcoT22I ATGCAT 1 cut(s) 756
ErhI CCWWGG 3 cut(s) 202, 309, 430
FaeI CATG 6 cut(s) 212, 563, 574, 688, 754, 758
FatI CATG 6 cut(s) 208, 559, 570, 684, 750, 754
FauNDI CATATG 1 cut(s) 733
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 4 cut(s) 254, 263, 319, 500
FokI GGATG 2 cut(s) 71, 455
Fsp4HI GCNGC 4 cut(s) 254, 263, 319, 500
GlaI GCGC 1 cut(s) 778
GluI GCNGC 4 cut(s) 254, 263, 319, 500
GsuI CTGGAG 3 cut(s) 57, 371, 543
HaeIII GGCC 2 cut(s) 294, 436
HapII CCGG 2 cut(s) 102, 765
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 779
Hin1II CATG 6 cut(s) 212, 563, 574, 688, 754, 758
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HincII GTYRAC 2 cut(s) 480, 535
HindII GTYRAC 2 cut(s) 480, 535
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 1 cut(s) 586
HpaII CCGG 2 cut(s) 102, 765
HphI GGTGA 5 cut(s) 62, 347, 419, 618, 770
Hpy166II GTNNAC 5 cut(s) 373, 480, 535, 621, 682
Hpy188I TCNGA 2 cut(s) 30, 507
Hpy188III TCNNGA 2 cut(s) 86, 725
Hpy8I GTNNAC 5 cut(s) 373, 480, 535, 621, 682
HpyAV CCTTC 3 cut(s) 25, 42, 560
HpyCH4III ACNGT 2 cut(s) 477, 494
HpyCH4IV ACGT 2 cut(s) 188, 375
HpyCH4V TGCA 6 cut(s) 144, 153, 282, 330, 549, 754
HpyF10VI GCNNNNNNNGC 7 cut(s) 150, 198, 237, 259, 262, 279, 327
HpySE526I ACGT 2 cut(s) 188, 375
Hsp92II CATG 6 cut(s) 212, 563, 574, 688, 754, 758
HspAI GCGC 1 cut(s) 777
Kzo9I GATC 4 cut(s) 63, 91, 138, 405
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 4 cut(s) 265, 274, 305, 511
LweI GCATC 1 cut(s) 751
MaeII ACGT 2 cut(s) 188, 375
MaeIII GTNAC 2 cut(s) 124, 335
MalI GATC 4 cut(s) 65, 93, 140, 407
MboI GATC 4 cut(s) 63, 91, 138, 405
MboII GAAGA 3 cut(s) 101, 367, 752
MflI RGATCY 3 cut(s) 63, 91, 138
MhlI GDGCHC 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 1 cut(s) 244
MluNI TGGCCA 1 cut(s) 294
MmeI TCCRAC 2 cut(s) 8, 496
MnlI CCTC 7 cut(s) 32, 49, 83, 682, 721, 730, 739
Mox20I TGGCCA 1 cut(s) 294
Mph1103I ATGCAT 1 cut(s) 756
MscI TGGCCA 1 cut(s) 294
MseI TTAA 3 cut(s) 236, 510, 597
MslI CAYNNNNRTG 1 cut(s) 759
Msp20I TGGCCA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 2 cut(s) 102, 765
MspR9I CCNGG 2 cut(s) 417, 522
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 2 cut(s) 417, 522
MwoI GCNNNNNNNGC 7 cut(s) 150, 198, 237, 259, 262, 279, 327
NdeI CATATG 1 cut(s) 733
NdeII GATC 4 cut(s) 63, 91, 138, 405
NlaIII CATG 6 cut(s) 212, 563, 574, 688, 754, 758
NlaIV GGNNCC 1 cut(s) 645
NmuCI GTSAC 2 cut(s) 124, 335
NsiI ATGCAT 1 cut(s) 756
NspI RCATGY 2 cut(s) 574, 754
PaeI GCATGC 1 cut(s) 574
PctI GAATGC 1 cut(s) 659
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 4 cut(s) 255, 264, 320, 501
PmaCI CACGTG 1 cut(s) 376
PmlI CACGTG 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 376
PsiI TTATAA 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 415, 520
PspCI CACGTG 1 cut(s) 376
PspGI CCWGG 2 cut(s) 415, 520
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 2 cut(s) 313, 434
PsrI GAACNNNNNNTAC 2 cut(s) 602, 634
PstNI CAGNNNCTG 1 cut(s) 505
PsuI RGATCY 3 cut(s) 63, 91, 138
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 759
SalI GTCGAC 1 cut(s) 533
SaqAI TTAA 3 cut(s) 236, 510, 597
SatI GCNGC 4 cut(s) 254, 263, 319, 500
Sau3AI GATC 4 cut(s) 63, 91, 138, 405
Sau96I GGNCC 2 cut(s) 313, 434
ScrFI CCNGG 2 cut(s) 417, 522
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 1 cut(s) 751
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 2 cut(s) 74, 723
SmoI CTYRAG 2 cut(s) 74, 723
SphI GCATGC 1 cut(s) 574
Sse9I AATT 1 cut(s) 244
SsiI CCGC 2 cut(s) 316, 629
SspI AATATT 2 cut(s) 363, 457
StyD4I CCNGG 2 cut(s) 415, 520
StyI CCWWGG 3 cut(s) 202, 309, 430
TaaI ACNGT 2 cut(s) 477, 494
TaiI ACGT 2 cut(s) 191, 378
TaqI TCGA 2 cut(s) 534, 584
TasI AATT 1 cut(s) 244
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 3 cut(s) 236, 510, 597
Tru9I TTAA 3 cut(s) 236, 510, 597
TscAI CASTG 3 cut(s) 295, 332, 551
TseFI GTSAC 2 cut(s) 124, 335
TseI GCWGC 4 cut(s) 253, 262, 318, 499
Tsp45I GTSAC 2 cut(s) 124, 335
TspDTI ATGAA 2 cut(s) 404, 579
TspRI CASTG 3 cut(s) 295, 332, 551
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 244
XceI RCATGY 2 cut(s) 574, 754
XmiI GTMKAC 1 cut(s) 534
Zsp2I ATGCAT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.