DnaJ protein homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 263, 563, 1202 |
| AccII | CGCG | 1 cut(s) | 204 |
| AciI | CCGC | 7 cut(s) | 72, 255, 303, 306, 406, 775, 831 |
| AclWI | GGATC | 6 cut(s) | 46, 185, 334, 520, 597, 689 |
| AcuI | CTGAAG | 1 cut(s) | 110 |
| AfaI | GTAC | 2 cut(s) | 44, 950 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 134, 820 |
| AgeI | ACCGGT | 1 cut(s) | 566 |
| AgsI | TTSAA | 3 cut(s) | 459, 919, 1015 |
| AjnI | CCWGG | 3 cut(s) | 469, 691, 1055 |
| AluBI | AGCT | 4 cut(s) | 394, 601, 701, 1072 |
| AluI | AGCT | 4 cut(s) | 394, 601, 701, 1072 |
| Alw26I | GTCTC | 4 cut(s) | 502, 566, 1097, 1167 |
| AlwI | GGATC | 6 cut(s) | 46, 185, 334, 520, 597, 689 |
| Ama87I | CYCGRG | 1 cut(s) | 512 |
| AoxI | GGCC | 2 cut(s) | 165, 515 |
| ApeKI | GCWGC | 6 cut(s) | 110, 309, 319, 538, 594, 1048 |
| AseI | ATTAAT | 1 cut(s) | 579 |
| AsiGI | ACCGGT | 1 cut(s) | 566 |
| AspLEI | GCGC | 6 cut(s) | 204, 235, 712, 826, 1143, 1223 |
| AspS9I | GGNCC | 3 cut(s) | 166, 515, 1213 |
| AsuC2I | CCSGG | 2 cut(s) | 891, 1004 |
| AsuHPI | GGTGA | 5 cut(s) | 581, 623, 707, 794, 982 |
| AvaI | CYCGRG | 1 cut(s) | 512 |
| AvaII | GGWCC | 1 cut(s) | 1213 |
| BaeGI | GKGCMC | 3 cut(s) | 268, 566, 1207 |
| BanI | GGYRCC | 3 cut(s) | 263, 563, 1202 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 83, 115 |
| BbvI | GCAGC | 6 cut(s) | 122, 321, 331, 550, 581, 1035 |
| BccI | CCATC | 3 cut(s) | 122, 132, 351 |
| BceAI | ACGGC | 2 cut(s) | 297, 1128 |
| BciT130I | CCWGG | 3 cut(s) | 471, 693, 1057 |
| BclI | TGATCA | 1 cut(s) | 910 |
| BcnI | CCSGG | 2 cut(s) | 891, 1004 |
| BcoDI | GTCTC | 4 cut(s) | 502, 566, 1097, 1167 |
| BfaI | CTAG | 1 cut(s) | 1088 |
| BfmI | CTRYAG | 1 cut(s) | 373 |
| BfoI | RGCGCY | 2 cut(s) | 713, 827 |
| BglII | AGATCT | 1 cut(s) | 367 |
| BisI | GCNGC | 9 cut(s) | 111, 304, 307, 310, 320, 539, 595, 832, 1049 |
| BlsI | GCNGC | 9 cut(s) | 112, 305, 308, 311, 321, 540, 596, 833, 1050 |
| BmcAI | AGTACT | 1 cut(s) | 44 |
| Bme1390I | CCNGG | 5 cut(s) | 471, 693, 891, 1004, 1057 |
| Bme18I | GGWCC | 1 cut(s) | 1213 |
| BmeT110I | CYCGRG | 1 cut(s) | 512 |
| BmgT120I | GGNCC | 3 cut(s) | 166, 515, 1213 |
| BmiI | GGNNCC | 4 cut(s) | 265, 565, 1204, 1214 |
| BmrFI | CCNGG | 5 cut(s) | 471, 693, 891, 1004, 1057 |
| BmsI | GCATC | 4 cut(s) | 220, 517, 550, 654 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1159 |
| BpuEI | CTTGAG | 2 cut(s) | 221, 1149 |
| BpuMI | CCSGG | 2 cut(s) | 891, 1004 |
| BsaI | GGTCTC | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 6 cut(s) | 55, 478, 691, 993, 1035, 1055 |
| BsaWI | WCCGGW | 1 cut(s) | 566 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 321, 351, 885, 915 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 134, 820 |
| Bse118I | RCCGGY | 1 cut(s) | 566 |
| Bse1I | ACTGG | 1 cut(s) | 289 |
| Bse3DI | GCAATG | 1 cut(s) | 556 |
| BseBI | CCWGG | 3 cut(s) | 471, 693, 1057 |
| BseDI | CCNNGG | 6 cut(s) | 55, 478, 691, 993, 1035, 1055 |
| BseGI | GGATG | 9 cut(s) | 124, 235, 340, 343, 383, 541, 669, 886, 1189 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 134, 820 |
| BseMI | GCAATG | 1 cut(s) | 556 |
| BseMII | CTCAG | 1 cut(s) | 176 |
| BseNI | ACTGG | 1 cut(s) | 289 |
| BseRI | GAGGAG | 2 cut(s) | 863, 1115 |
| BseSI | GKGCMC | 3 cut(s) | 268, 566, 1207 |
| BseXI | GCAGC | 6 cut(s) | 122, 321, 331, 550, 581, 1035 |
| BseYI | CCCAGC | 1 cut(s) | 1068 |
| BsgI | GTGCAG | 1 cut(s) | 644 |
| Bsh1236I | CGCG | 1 cut(s) | 204 |
| BshFI | GGCC | 2 cut(s) | 167, 517 |
| BshNI | GGYRCC | 3 cut(s) | 263, 563, 1202 |
| BshTI | ACCGGT | 1 cut(s) | 566 |
| BsiHKCI | CYCGRG | 1 cut(s) | 512 |
| BsiSI | CCGG | 3 cut(s) | 567, 891, 1004 |
| BslFI | GGGAC | 3 cut(s) | 47, 382, 796 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 134, 820 |
| BsmAI | GTCTC | 4 cut(s) | 502, 566, 1097, 1167 |
| BsmFI | GGGAC | 3 cut(s) | 47, 382, 796 |
| BsnI | GGCC | 2 cut(s) | 167, 517 |
| Bso31I | GGTCTC | 1 cut(s) | 566 |
| BsoBI | CYCGRG | 1 cut(s) | 512 |
| Bsp1286I | GDGCHC | 3 cut(s) | 268, 566, 1207 |
| Bsp143I | GATC | 9 cut(s) | 51, 85, 190, 339, 367, 525, 589, 681, 910 |
| BspACI | CCGC | 7 cut(s) | 72, 255, 303, 306, 406, 775, 831 |
| BspANI | GGCC | 2 cut(s) | 167, 517 |
| BspCNI | CTCAG | 1 cut(s) | 177 |
| BspFNI | CGCG | 1 cut(s) | 204 |
| BspLI | GGNNCC | 4 cut(s) | 265, 565, 1204, 1214 |
| BspPI | GGATC | 6 cut(s) | 46, 185, 334, 520, 597, 689 |
| BspQI | GCTCTTC | 1 cut(s) | 20 |
| BspT107I | GGYRCC | 3 cut(s) | 263, 563, 1202 |
| BspTNI | GGTCTC | 1 cut(s) | 566 |
| BsrDI | GCAATG | 1 cut(s) | 556 |
| BsrFI | RCCGGY | 1 cut(s) | 566 |
| BsrI | ACTGG | 1 cut(s) | 289 |
| BssAI | RCCGGY | 1 cut(s) | 566 |
| BssECI | CCNNGG | 6 cut(s) | 55, 478, 691, 993, 1035, 1055 |
| BssMI | GATC | 9 cut(s) | 51, 85, 190, 339, 367, 525, 589, 681, 910 |
| BssT1I | CCWWGG | 3 cut(s) | 55, 478, 1035 |
| Bst2UI | CCWGG | 3 cut(s) | 471, 693, 1057 |
| Bst4CI | ACNGT | 4 cut(s) | 377, 721, 994, 1026 |
| Bst6I | CTCTTC | 1 cut(s) | 20 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 555 |
| BstC8I | GCNNGC | 3 cut(s) | 599, 866, 941 |
| BstDEI | CTNAG | 2 cut(s) | 185, 765 |
| BstDSI | CCRYGG | 1 cut(s) | 993 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 818 |
| BstF5I | GGATG | 9 cut(s) | 124, 235, 340, 343, 383, 541, 669, 886, 1189 |
| BstFNI | CGCG | 1 cut(s) | 204 |
| BstH2I | RGCGCY | 2 cut(s) | 713, 827 |
| BstHHI | GCGC | 6 cut(s) | 204, 235, 712, 826, 1143, 1223 |
| BstKTI | GATC | 9 cut(s) | 54, 88, 193, 342, 370, 528, 592, 684, 913 |
| BstMAI | GTCTC | 4 cut(s) | 502, 566, 1097, 1167 |
| BstMBI | GATC | 9 cut(s) | 51, 85, 190, 339, 367, 525, 589, 681, 910 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 36, 309, 426, 514, 538, 555, 707 |
| BstNI | CCWGG | 3 cut(s) | 471, 693, 1057 |
| BstNSI | RCATGY | 1 cut(s) | 943 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1159 |
| BstSCI | CCNGG | 5 cut(s) | 469, 691, 889, 1002, 1055 |
| BstSFI | CTRYAG | 1 cut(s) | 373 |
| BstSLI | GKGCMC | 3 cut(s) | 268, 566, 1207 |
| BstUI | CGCG | 1 cut(s) | 204 |
| BstV1I | GCAGC | 6 cut(s) | 122, 321, 331, 550, 581, 1035 |
| BstX2I | RGATCY | 2 cut(s) | 51, 367 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 485 |
| BstYI | RGATCY | 2 cut(s) | 51, 367 |
| BsuRI | GGCC | 2 cut(s) | 167, 517 |
| BtgI | CCRYGG | 1 cut(s) | 993 |
| BtsCI | GGATG | 9 cut(s) | 124, 235, 340, 343, 383, 541, 669, 886, 1189 |
| BtsI | GCAGTG | 2 cut(s) | 1050, 1109 |
| BtsIMutI | CAGTG | 5 cut(s) | 382, 717, 1031, 1050, 1109 |
| Cac8I | GCNNGC | 3 cut(s) | 599, 866, 941 |
| CfoI | GCGC | 6 cut(s) | 204, 235, 712, 826, 1143, 1223 |
| Cfr10I | RCCGGY | 1 cut(s) | 566 |
| Cfr13I | GGNCC | 3 cut(s) | 166, 515, 1213 |
| Csp6I | GTAC | 2 cut(s) | 43, 949 |
| CspAI | ACCGGT | 1 cut(s) | 566 |
| CviAII | CATG | 6 cut(s) | 523, 650, 940, 1081, 1115, 1196 |
| CviQI | GTAC | 2 cut(s) | 43, 949 |
| DdeI | CTNAG | 2 cut(s) | 185, 765 |
| DpnI | GATC | 9 cut(s) | 53, 87, 192, 341, 369, 527, 591, 683, 912 |
| DpnII | GATC | 9 cut(s) | 51, 85, 190, 339, 367, 525, 589, 681, 910 |
| DraI | TTTAAA | 1 cut(s) | 157 |
| Eam1104I | CTCTTC | 1 cut(s) | 20 |
| EarI | CTCTTC | 1 cut(s) | 20 |
| EciI | GGCGGA | 1 cut(s) | 270 |
| Eco130I | CCWWGG | 3 cut(s) | 55, 478, 1035 |
| Eco31I | GGTCTC | 1 cut(s) | 566 |
| Eco47I | GGWCC | 1 cut(s) | 1213 |
| Eco57I | CTGAAG | 1 cut(s) | 110 |
| Eco88I | CYCGRG | 1 cut(s) | 512 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 818 |
| EcoRII | CCWGG | 3 cut(s) | 469, 691, 1055 |
| EcoT14I | CCWWGG | 3 cut(s) | 55, 478, 1035 |
| EcoT22I | ATGCAT | 1 cut(s) | 1197 |
| ErhI | CCWWGG | 3 cut(s) | 55, 478, 1035 |
| FaeI | CATG | 6 cut(s) | 526, 653, 943, 1084, 1118, 1199 |
| FaqI | GGGAC | 3 cut(s) | 47, 382, 796 |
| FatI | CATG | 6 cut(s) | 522, 649, 939, 1080, 1114, 1195 |
| FauI | CCCGC | 1 cut(s) | 413 |
| FbaI | TGATCA | 1 cut(s) | 910 |
| Fnu4HI | GCNGC | 9 cut(s) | 111, 304, 307, 310, 320, 539, 595, 832, 1049 |
| FokI | GGATG | 9 cut(s) | 111, 242, 330, 347, 370, 528, 676, 873, 1196 |
| Fsp4HI | GCNGC | 9 cut(s) | 111, 304, 307, 310, 320, 539, 595, 832, 1049 |
| FspBI | CTAG | 1 cut(s) | 1088 |
| GlaI | GCGC | 6 cut(s) | 203, 234, 711, 825, 1142, 1222 |
| GluI | GCNGC | 9 cut(s) | 111, 304, 307, 310, 320, 539, 595, 832, 1049 |
| GsaI | CCCAGC | 1 cut(s) | 1072 |
| HaeII | RGCGCY | 2 cut(s) | 713, 827 |
| HaeIII | GGCC | 2 cut(s) | 167, 517 |
| HapII | CCGG | 3 cut(s) | 567, 891, 1004 |
| HhaI | GCGC | 6 cut(s) | 204, 235, 712, 826, 1143, 1223 |
| Hin1II | CATG | 6 cut(s) | 526, 653, 943, 1084, 1118, 1199 |
| Hin6I | GCGC | 6 cut(s) | 202, 233, 710, 824, 1141, 1221 |
| HinP1I | GCGC | 6 cut(s) | 202, 233, 710, 824, 1141, 1221 |
| HinfI | GANTC | 3 cut(s) | 60, 1007, 1015 |
| HpaII | CCGG | 3 cut(s) | 567, 891, 1004 |
| HphI | GGTGA | 5 cut(s) | 581, 623, 707, 794, 982 |
| Hpy166II | GTNNAC | 3 cut(s) | 974, 1123, 1148 |
| Hpy188I | TCNGA | 2 cut(s) | 21, 90 |
| Hpy188III | TCNNGA | 9 cut(s) | 7, 118, 128, 194, 362, 486, 655, 1019, 1166 |
| Hpy8I | GTNNAC | 3 cut(s) | 974, 1123, 1148 |
| HpyAV | CCTTC | 9 cut(s) | 88, 236, 318, 528, 628, 652, 772, 929, 961 |
| HpyCH4III | ACNGT | 4 cut(s) | 377, 721, 994, 1026 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 36, 309, 426, 514, 538, 555, 707 |
| HpyF3I | CTNAG | 2 cut(s) | 185, 765 |
| Hsp92II | CATG | 6 cut(s) | 526, 653, 943, 1084, 1118, 1199 |
| HspAI | GCGC | 6 cut(s) | 202, 233, 710, 824, 1141, 1221 |
| Ksp22I | TGATCA | 1 cut(s) | 910 |
| Kzo9I | GATC | 9 cut(s) | 51, 85, 190, 339, 367, 525, 589, 681, 910 |
| LguI | GCTCTTC | 1 cut(s) | 20 |
| LmnI | GCTCC | 1 cut(s) | 425 |
| Lsp1109I | GCAGC | 6 cut(s) | 122, 321, 331, 550, 581, 1035 |
| LweI | GCATC | 4 cut(s) | 220, 517, 550, 654 |
| MaeI | CTAG | 1 cut(s) | 1088 |
| MaeIII | GTNAC | 2 cut(s) | 721, 782 |
| MalI | GATC | 9 cut(s) | 53, 87, 192, 341, 369, 527, 591, 683, 912 |
| MboI | GATC | 9 cut(s) | 51, 85, 190, 339, 367, 525, 589, 681, 910 |
| MboII | GAAGA | 7 cut(s) | 34, 37, 103, 289, 377, 1142, 1145 |
| MflI | RGATCY | 2 cut(s) | 51, 367 |
| MhlI | GDGCHC | 3 cut(s) | 268, 566, 1207 |
| MluCI | AATT | 2 cut(s) | 839, 914 |
| MlyI | GAGTC | 2 cut(s) | 69, 1001 |
| Mph1103I | ATGCAT | 1 cut(s) | 1197 |
| MseI | TTAA | 4 cut(s) | 156, 351, 579, 771 |
| MslI | CAYNNNNRTG | 2 cut(s) | 944, 1200 |
| MspA1I | CMGCKG | 1 cut(s) | 601 |
| MspI | CCGG | 3 cut(s) | 567, 891, 1004 |
| MspR9I | CCNGG | 5 cut(s) | 471, 693, 891, 1004, 1057 |
| MvaI | CCWGG | 3 cut(s) | 471, 693, 1057 |
| MvnI | CGCG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 36, 309, 426, 514, 538, 555, 707 |
| NciI | CCSGG | 2 cut(s) | 891, 1004 |
| NdeII | GATC | 9 cut(s) | 51, 85, 190, 339, 367, 525, 589, 681, 910 |
| NlaIII | CATG | 6 cut(s) | 526, 653, 943, 1084, 1118, 1199 |
| NlaIV | GGNNCC | 4 cut(s) | 265, 565, 1204, 1214 |
| NmuCI | GTSAC | 2 cut(s) | 721, 782 |
| NsiI | ATGCAT | 1 cut(s) | 1197 |
| NspI | RCATGY | 1 cut(s) | 943 |
| PaeI | GCATGC | 1 cut(s) | 943 |
| PciSI | GCTCTTC | 1 cut(s) | 20 |
| PfeI | GAWTC | 1 cut(s) | 1015 |
| PflFI | GACNNNGTC | 1 cut(s) | 719 |
| PfoI | TCCNGGA | 2 cut(s) | 889, 1002 |
| PinAI | ACCGGT | 1 cut(s) | 566 |
| PkrI | GCNGC | 9 cut(s) | 112, 305, 308, 311, 321, 540, 596, 833, 1050 |
| PleI | GAGTC | 2 cut(s) | 68, 1001 |
| PpsI | GAGTC | 2 cut(s) | 68, 1001 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1159 |
| PshBI | ATTAAT | 1 cut(s) | 579 |
| Psp6I | CCWGG | 3 cut(s) | 469, 691, 1055 |
| PspFI | CCCAGC | 1 cut(s) | 1068 |
| PspGI | CCWGG | 3 cut(s) | 469, 691, 1055 |
| PspN4I | GGNNCC | 4 cut(s) | 265, 565, 1204, 1214 |
| PspPI | GGNCC | 3 cut(s) | 166, 515, 1213 |
| PsuI | RGATCY | 2 cut(s) | 51, 367 |
| PsyI | GACNNNGTC | 1 cut(s) | 719 |
| PvuII | CAGCTG | 1 cut(s) | 601 |
| RsaI | GTAC | 2 cut(s) | 44, 950 |
| RsaNI | GTAC | 2 cut(s) | 43, 949 |
| RseI | CAYNNNNRTG | 2 cut(s) | 944, 1200 |
| SapI | GCTCTTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 4 cut(s) | 156, 351, 579, 771 |
| SatI | GCNGC | 9 cut(s) | 111, 304, 307, 310, 320, 539, 595, 832, 1049 |
| Sau3AI | GATC | 9 cut(s) | 51, 85, 190, 339, 367, 525, 589, 681, 910 |
| Sau96I | GGNCC | 3 cut(s) | 166, 515, 1213 |
| ScaI | AGTACT | 1 cut(s) | 44 |
| SchI | GAGTC | 2 cut(s) | 69, 1001 |
| ScrFI | CCNGG | 5 cut(s) | 471, 693, 891, 1004, 1057 |
| SduI | GDGCHC | 3 cut(s) | 268, 566, 1207 |
| SfaNI | GCATC | 4 cut(s) | 220, 517, 550, 654 |
| SfcI | CTRYAG | 1 cut(s) | 373 |
| SgrAI | CRCCGGYG | 1 cut(s) | 566 |
| SinI | GGWCC | 1 cut(s) | 1213 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 944, 1200 |
| SmlI | CTYRAG | 2 cut(s) | 236, 1164 |
| SmoI | CTYRAG | 2 cut(s) | 236, 1164 |
| SphI | GCATGC | 1 cut(s) | 943 |
| Sse9I | AATT | 2 cut(s) | 839, 914 |
| SsiI | CCGC | 7 cut(s) | 72, 255, 303, 306, 406, 775, 831 |
| SspMI | CTAG | 1 cut(s) | 1088 |
| StyD4I | CCNGG | 5 cut(s) | 469, 691, 889, 1002, 1055 |
| StyI | CCWWGG | 3 cut(s) | 55, 478, 1035 |
| TaaI | ACNGT | 4 cut(s) | 377, 721, 994, 1026 |
| TaqI | TCGA | 1 cut(s) | 654 |
| TasI | AATT | 2 cut(s) | 839, 914 |
| TatI | WGTACW | 1 cut(s) | 42 |
| TauI | GCSGC | 3 cut(s) | 306, 309, 834 |
| TfiI | GAWTC | 1 cut(s) | 1015 |
| Tru1I | TTAA | 4 cut(s) | 156, 351, 579, 771 |
| Tru9I | TTAA | 4 cut(s) | 156, 351, 579, 771 |
| TscAI | CASTG | 5 cut(s) | 382, 724, 1031, 1050, 1116 |
| TseFI | GTSAC | 2 cut(s) | 721, 782 |
| TseI | GCWGC | 6 cut(s) | 110, 309, 319, 538, 594, 1048 |
| Tsp45I | GTSAC | 2 cut(s) | 721, 782 |
| TspDTI | ATGAA | 5 cut(s) | 506, 720, 948, 980, 1107 |
| TspRI | CASTG | 5 cut(s) | 382, 724, 1031, 1050, 1116 |
| Tth111I | GACNNNGTC | 1 cut(s) | 719 |
| VpaK11BI | GGWCC | 1 cut(s) | 1213 |
| VspI | ATTAAT | 1 cut(s) | 579 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 818 |
| XceI | RCATGY | 1 cut(s) | 943 |
| XspI | CTAG | 1 cut(s) | 1088 |
| ZrmI | AGTACT | 1 cut(s) | 44 |
| Zsp2I | ATGCAT | 1 cut(s) | 1197 |