Rh4DG290600

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000572
Physical Location & Seq
Forward (+)
51184960 .. 51191499
6540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG290600.1

Sequence Viewer

Length: 471 bp
ATGTTTGGGGGATATCAAAATGAGAAGAGCGATTACACCGTACCACCAAGTCGGAAGGCCAGAGGCAGAGAAGGGGAGAGGATGGGATCTATCACCTCAAGGTTTCTCTTGAAGATCTCTACACTGGCACAACCAGAAAGCTTGCTGTCACTCGCAACAAGATCTGCACCAAGTGCAAGGGCAAAGGGTCAAAGTCAGGTGCTTCAAGGACGTGCCGTGGTTGCCAAGGGCATGGTTATAAAGTCACTGTTGACACATTTGGACGGTAGGCAGCTTCTGATTAAGTCTCAACCTGGAGAAGTTGTCAACCCTAATCAGTGCAAAGCTATACATAATGAAGGCATGCCAATATACTCGAATCCATTTAGTAAGGGCAAGTTGTATGTTCAGTTCACTGTTAAGTACCCAAACTCCTTGAGCCCAGAACTGTGCAAGGCACTGGAGGCTGTGCTGCCTTGCGGGTCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

156

Amino Acids

16.91

Weight (kDa)

9.88

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
AciI CCGC 1 cut(s) 459
AclWI GGATC 1 cut(s) 94
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 2 cut(s) 42, 404
AgsI TTSAA 2 cut(s) 112, 206
AjiI CACGTC 1 cut(s) 212
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 3 cut(s) 141, 274, 326
AluI AGCT 3 cut(s) 141, 274, 326
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 94
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 271, 451
AsuHPI GGTGA 1 cut(s) 85
BanII GRGCYC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbvI GCAGC 2 cut(s) 283, 438
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 469
BglII AGATCT 2 cut(s) 114, 161
BisI GCNGC 2 cut(s) 272, 452
BlsI GCNGC 2 cut(s) 273, 453
Bme1390I CCNGG 1 cut(s) 294
BmgBI CACGTC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 294
BpmI CTGGAG 2 cut(s) 315, 461
BpuEI CTTGAG 2 cut(s) 82, 436
BsaJI CCNNGG 2 cut(s) 216, 225
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 395, 425
Bse1I ACTGG 2 cut(s) 129, 444
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 216, 225
BseGI GGATG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 129, 444
BseXI GCAGC 2 cut(s) 283, 438
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 291
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 3 cut(s) 86, 114, 161
BspACI CCGC 1 cut(s) 459
BspANI GGCC 1 cut(s) 59
BspPI GGATC 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 20
BsrI ACTGG 2 cut(s) 129, 444
BssECI CCNNGG 2 cut(s) 216, 225
BssMI GATC 3 cut(s) 86, 114, 161
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 5 cut(s) 40, 249, 266, 397, 429
Bst6I CTCTTC 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 143, 344
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 3 cut(s) 89, 117, 164
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 3 cut(s) 86, 114, 161
BstMWI GCNNNNNNNGC 4 cut(s) 173, 221, 443, 465
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 283, 438
BstX2I RGATCY 3 cut(s) 86, 114, 161
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 3 cut(s) 86, 114, 161
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 216
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 5 cut(s) 122, 245, 323, 393, 437
Cac8I GCNNGC 2 cut(s) 143, 344
CaiI CAGNNNCTG 1 cut(s) 277
Csp6I GTAC 2 cut(s) 41, 403
CviAII CATG 2 cut(s) 232, 343
CviJI RGCY 7 cut(s) 59, 141, 274, 326, 420, 446, 468
CviKI_1 RGCY 7 cut(s) 59, 141, 274, 326, 420, 446, 468
CviQI GTAC 2 cut(s) 41, 403
DpnI GATC 3 cut(s) 88, 116, 163
DpnII GATC 3 cut(s) 86, 114, 161
DraIII CACNNNGTG 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 235, 346
FaiI YATR 7 cut(s) 233, 239, 329, 333, 344, 352, 384
FatI CATG 2 cut(s) 231, 342
FauI CCCGC 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 272, 452
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 2 cut(s) 272, 452
FspBI CTAG 1 cut(s) 469
GluI GCNGC 2 cut(s) 272, 452
GsuI CTGGAG 2 cut(s) 315, 461
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 2 cut(s) 235, 346
HincII GTYRAC 2 cut(s) 252, 307
HindII GTYRAC 2 cut(s) 252, 307
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 1 cut(s) 358
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 252, 307, 393
Hpy188I TCNGA 2 cut(s) 54, 279
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 3 cut(s) 252, 307, 393
HpyAV CCTTC 3 cut(s) 49, 65, 332
HpyCH4III ACNGT 5 cut(s) 40, 249, 266, 397, 429
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 4 cut(s) 167, 176, 321, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 221, 443, 465
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 2 cut(s) 235, 346
Kzo9I GATC 3 cut(s) 86, 114, 161
LguI GCTCTTC 1 cut(s) 20
LpnPI CCDG 9 cut(s) 73, 110, 147, 182, 279, 306, 425, 435, 450
Lsp1109I GCAGC 2 cut(s) 283, 438
MaeI CTAG 1 cut(s) 469
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 147, 243
MalI GATC 3 cut(s) 88, 116, 163
MboI GATC 3 cut(s) 86, 114, 161
MboII GAAGA 2 cut(s) 37, 124
MflI RGATCY 3 cut(s) 86, 114, 161
MhlI GDGCHC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 4 cut(s) 56, 72, 106, 436
MseI TTAA 2 cut(s) 282, 399
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 4 cut(s) 173, 221, 443, 465
NdeII GATC 3 cut(s) 86, 114, 161
NlaIII CATG 2 cut(s) 235, 346
NmuCI GTSAC 2 cut(s) 147, 243
NspI RCATGY 1 cut(s) 346
PaeI GCATGC 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 273, 453
PsiI TTATAA 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 3 cut(s) 86, 114, 161
RsaI GTAC 2 cut(s) 42, 404
RsaNI GTAC 2 cut(s) 41, 403
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 282, 399
SatI GCNGC 2 cut(s) 272, 452
Sau3AI GATC 3 cut(s) 86, 114, 161
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 422
SetI ASST 8 cut(s) 98, 104, 143, 201, 214, 276, 295, 328
SmlI CTYRAG 2 cut(s) 97, 415
SmoI CTYRAG 2 cut(s) 97, 415
SphI GCATGC 1 cut(s) 346
SsiI CCGC 1 cut(s) 459
SspMI CTAG 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 5 cut(s) 40, 249, 266, 397, 429
TaiI ACGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 356
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 2 cut(s) 282, 399
Tru9I TTAA 2 cut(s) 282, 399
TscAI CASTG 5 cut(s) 129, 252, 323, 400, 444
TseFI GTSAC 2 cut(s) 147, 243
TseI GCWGC 2 cut(s) 271, 451
Tsp45I GTSAC 2 cut(s) 147, 243
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 5 cut(s) 129, 252, 323, 400, 444
XceI RCATGY 1 cut(s) 346
XspI CTAG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.