Rorug01G0315800

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000572
Physical Location & Seq
Forward (+)
43338250 .. 43339773
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0315800.1

Sequence Viewer

Length: 351 bp
ATGGGGAGCAATGGAACAACTGAATACCAGGACTTGTTACCAGTGATGGCAGAGAAGCTGGATGTGGAGACCTTTGTGTCCGAGCTATGTGGAGGTTTTCGACTTCTGGCAGACCCCGAAAGCGGGCTGATCACCTCGGAGAGCCTGAAGAAGAATTCTGCGCTTCTCGGAATGGAGGGGATGAGCAAAGAGGATGCTGAGGGCATGGTTAGGGAAGGTGATCTTGATGGAGACGGCGTGCTGAATGAGACGGAGTTCTGTATTCTCATGGTGAGGCTGAGTCCAGGAATGATGGAAGATGCAGAGACTTGGCTTGAGAAAGCTCTTGAACAAGAGCTAAAGAAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

116

Amino Acids

12.68

Weight (kDa)

4.15

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_8 PF13833 40 - 92 2.2e-16 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 76
AciI CCGC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 122, 123
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 2 cut(s) 27, 283
AluBI AGCT 4 cut(s) 58, 85, 323, 337
AluI AGCT 4 cut(s) 58, 85, 323, 337
Alw26I GTCTC 4 cut(s) 62, 225, 242, 299
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 124, 230, 283
BbvCI CCTCAGC 1 cut(s) 198
BccI CCATC 3 cut(s) 40, 221, 286
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 29, 285
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 4 cut(s) 62, 225, 242, 299
Bme1390I CCNGG 2 cut(s) 29, 285
BmrFI CCNGG 2 cut(s) 29, 285
BmsI GCATC 2 cut(s) 184, 289
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 123
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 2 cut(s) 29, 285
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 3 cut(s) 67, 186, 199
BseLI CCNNNNNNNGG 2 cut(s) 122, 123
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 189, 269
BseNI ACTGG 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 122, 123
BsmAI GTCTC 4 cut(s) 62, 225, 242, 299
BsmBI CGTCTC 2 cut(s) 225, 242
Bso31I GGTCTC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 129, 220
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 190, 270
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 129, 220
Bst2UI CCWGG 2 cut(s) 29, 285
BstC8I GCNNGC 2 cut(s) 125, 239
BstDEI CTNAG 2 cut(s) 198, 278
BstF5I GGATG 3 cut(s) 67, 186, 199
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 2 cut(s) 132, 223
BstMAI GTCTC 4 cut(s) 62, 225, 242, 299
BstMBI GATC 2 cut(s) 129, 220
BstNI CCWGG 2 cut(s) 29, 285
BstSCI CCNGG 2 cut(s) 27, 283
BtsCI GGATG 3 cut(s) 67, 186, 199
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 125, 239
CfoI GCGC 1 cut(s) 163
CviAII CATG 2 cut(s) 205, 268
CviJI RGCY 8 cut(s) 58, 85, 127, 144, 277, 313, 323, 337
CviKI_1 RGCY 8 cut(s) 58, 85, 127, 144, 277, 313, 323, 337
DdeI CTNAG 2 cut(s) 198, 278
DpnI GATC 2 cut(s) 131, 222
DpnII GATC 2 cut(s) 129, 220
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 27, 283
Esp3I CGTCTC 2 cut(s) 225, 242
FaeI CATG 2 cut(s) 208, 271
FaiI YATR 3 cut(s) 88, 206, 269
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 2 cut(s) 204, 267
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 129
FokI GGATG 3 cut(s) 74, 193, 206
GlaI GCGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 208, 271
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 1 cut(s) 280
HphI GGTGA 3 cut(s) 124, 230, 283
Hpy188I TCNGA 3 cut(s) 82, 139, 170
Hpy188III TCNNGA 3 cut(s) 224, 326, 348
HpyAV CCTTC 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 198, 278
Hsp92II CATG 2 cut(s) 208, 271
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 129, 220
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 8 cut(s) 14, 41, 44, 54, 92, 158, 270, 297
LweI GCATC 2 cut(s) 184, 289
MaeIII GTNAC 1 cut(s) 36
MalI GATC 2 cut(s) 131, 222
MboI GATC 2 cut(s) 129, 220
MboII GAAGA 3 cut(s) 160, 163, 308
MluCI AATT 1 cut(s) 154
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 6 cut(s) 86, 145, 169, 184, 193, 267
MspR9I CCNGG 2 cut(s) 29, 285
MvaI CCWGG 2 cut(s) 29, 285
NdeII GATC 2 cut(s) 129, 220
NlaIII CATG 2 cut(s) 208, 271
PfoI TCCNGGA 1 cut(s) 283
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 27, 283
PspGI CCWGG 2 cut(s) 27, 283
Sau3AI GATC 2 cut(s) 129, 220
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 29, 285
SetI ASST 8 cut(s) 60, 74, 87, 97, 137, 220, 325, 339
SfaNI GCATC 2 cut(s) 184, 289
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 1 cut(s) 154
SsiI CCGC 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 27, 283
TaqI TCGA 1 cut(s) 100
TasI AATT 1 cut(s) 154
TscAI CASTG 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.