Rh4BG293700

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000572
Physical Location & Seq
Forward (+)
46564545 .. 46565333
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG293700.1

Sequence Viewer

Length: 789 bp
ATGAGGAGCGATTACACCACCAAATCGGAAGGCCGGAGGCAGAGAAGGGGAGAGGATGGGATCTATCACCTCAAGGTTTCTCTTCAAGATCTCTACACTGGCACAACCAGAAAGCTTGCTGTCACTCGCAACAAGATCTGCACCAAGTGCAAGGGCAAAGGGTCAAAGTCAGGCGCTTCAAGGACGTGCCGTGGTTGCCAAGGGCATGGTTATAAAGTCATTGTACGCCATTTAAGCCAAATTTTGACGCAGCGAACGCAGCAGTACTGCTATGAGTGCAAGGGCACTGGCCAGACCATCAGTGCAAAGGACCGCTGCCAGCAGTGCAAGGGTGACAAGGTTGTACTGGAGAAGAAAATATTGGAAGTCCATGTGGAGATAGGAATGAAAAACGGGCAGAAGATCATATTCCCCGGCGAAGCTCACGAAGCGCCTAATACCATCACAGGTAATATTGTTATTGTTGTCCAACAGAAGGAGCATCCCAAGTTTAAGCGAGAGGGGGATGACCTAATATTTAAGCATACATTGTCCCTAAAGGAGGCACTCTGTGGGTTCCAATTTAGGTTGACACATTTGGACGGTAGGCAGCTTCTGATTAAGTCTCAACCTGGAGAAGTTGTCAACCCTAATCGGTGCAAAGCTATACATGATGAAGGCATGCCAATCTACTCGAATCCATTTATTAAGGGCAAGTTGTATGTCCAGTTCACTGTTAAGTACCCAAATTCCTTGAACCCAGAACTGTGCAAGGTACTGGAGGCTGTGCTGCCTTGCGGGTCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

262

Amino Acids

29.51

Weight (kDa)

9.5

Isoelectric Point (pI)

22.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 22 - 242 4.5e-35 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 47 - 113 7.6e-13 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AciI CCGC 2 cut(s) 313, 777
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 240, 727
AdeI CACNNNGTG 2 cut(s) 147, 551
AfaI GTAC 5 cut(s) 225, 266, 345, 722, 756
AfiI CCNNNNNNNGG 2 cut(s) 475, 541
AgsI TTSAA 3 cut(s) 86, 180, 736
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 610
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 4 cut(s) 115, 422, 592, 644
AluI AGCT 4 cut(s) 115, 422, 592, 644
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 595
AoxI GGCC 2 cut(s) 31, 289
ApeKI GCWGC 5 cut(s) 250, 259, 315, 589, 769
ApoI RAATTY 2 cut(s) 240, 727
AspLEI GCGC 2 cut(s) 176, 433
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 2 cut(s) 59, 344
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 287
BalI TGGCCA 1 cut(s) 291
BbvI GCAGC 5 cut(s) 262, 271, 302, 601, 756
BccI CCATC 3 cut(s) 50, 305, 449
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 612
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 1 cut(s) 787
BfoI RGCGCY 2 cut(s) 177, 434
BglII AGATCT 2 cut(s) 88, 135
BisI GCNGC 5 cut(s) 251, 260, 316, 590, 770
BlsI GCNGC 5 cut(s) 252, 261, 317, 591, 771
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 2 cut(s) 414, 612
Bme18I GGWCC 1 cut(s) 310
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 557
BmrFI CCNGG 2 cut(s) 414, 612
BmsI GCATC 1 cut(s) 490
BpmI CTGGAG 3 cut(s) 368, 633, 779
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 414
BsaJI CCNNGG 3 cut(s) 190, 199, 412
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 541
Bse1I ACTGG 5 cut(s) 103, 292, 351, 706, 762
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 3 cut(s) 190, 199, 412
BseGI GGATG 3 cut(s) 61, 481, 511
BseLI CCNNNNNNNGG 2 cut(s) 475, 541
BseNI ACTGG 5 cut(s) 103, 292, 351, 706, 762
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 5 cut(s) 262, 271, 302, 601, 756
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 2 cut(s) 33, 291
BsiSI CCGG 2 cut(s) 34, 414
BslFI GGGAC 1 cut(s) 517
BslI CCNNNNNNNGG 2 cut(s) 475, 541
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 517
BsnI GGCC 2 cut(s) 33, 291
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 4 cut(s) 60, 88, 135, 402
BspACI CCGC 2 cut(s) 313, 777
BspANI GGCC 2 cut(s) 33, 291
BspLI GGNNCC 1 cut(s) 557
BspPI GGATC 1 cut(s) 68
BsrI ACTGG 5 cut(s) 103, 292, 351, 706, 762
BssECI CCNNGG 3 cut(s) 190, 199, 412
BssMI GATC 4 cut(s) 60, 88, 135, 402
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 3 cut(s) 584, 715, 747
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 117, 320, 662
BstDSI CCRYGG 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 3 cut(s) 61, 481, 511
BstH2I RGCGCY 2 cut(s) 177, 434
BstHHI GCGC 2 cut(s) 176, 433
BstKTI GATC 4 cut(s) 63, 91, 138, 405
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 4 cut(s) 60, 88, 135, 402
BstMWI GCNNNNNNNGC 8 cut(s) 147, 195, 234, 256, 259, 276, 324, 428
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 2 cut(s) 412, 610
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 5 cut(s) 262, 271, 302, 601, 756
BstX2I RGATCY 3 cut(s) 60, 88, 135
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 3 cut(s) 60, 88, 135
BsuRI GGCC 2 cut(s) 33, 291
BtgI CCRYGG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 3 cut(s) 61, 481, 511
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 5 cut(s) 96, 285, 307, 329, 711
Cac8I GCNNGC 3 cut(s) 117, 320, 662
CaiI CAGNNNCTG 1 cut(s) 595
CfoI GCGC 2 cut(s) 176, 433
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 256
Csp6I GTAC 5 cut(s) 224, 265, 344, 721, 755
CviAII CATG 4 cut(s) 206, 371, 650, 661
CviJI RGCY 8 cut(s) 33, 115, 237, 291, 422, 592, 644, 764
CviKI_1 RGCY 8 cut(s) 33, 115, 237, 291, 422, 592, 644, 764
CviQI GTAC 5 cut(s) 224, 265, 344, 721, 755
DpnI GATC 4 cut(s) 62, 90, 137, 404
DpnII GATC 4 cut(s) 60, 88, 135, 402
DraIII CACNNNGTG 2 cut(s) 147, 551
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 310
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 4 cut(s) 209, 374, 653, 664
FaqI GGGAC 1 cut(s) 517
FatI CATG 4 cut(s) 205, 370, 649, 660
FauI CCCGC 1 cut(s) 770
Fnu4HI GCNGC 5 cut(s) 251, 260, 316, 590, 770
FokI GGATG 3 cut(s) 68, 468, 518
Fsp4HI GCNGC 5 cut(s) 251, 260, 316, 590, 770
FspBI CTAG 1 cut(s) 787
GlaI GCGC 2 cut(s) 175, 432
GluI GCNGC 5 cut(s) 251, 260, 316, 590, 770
GsuI CTGGAG 3 cut(s) 368, 633, 779
HaeII RGCGCY 2 cut(s) 177, 434
HaeIII GGCC 2 cut(s) 33, 291
HapII CCGG 2 cut(s) 34, 414
HgaI GACGC 1 cut(s) 256
HhaI GCGC 2 cut(s) 176, 433
Hin1II CATG 4 cut(s) 209, 374, 653, 664
Hin6I GCGC 2 cut(s) 174, 431
HinP1I GCGC 2 cut(s) 174, 431
HincII GTYRAC 2 cut(s) 570, 625
HindII GTYRAC 2 cut(s) 570, 625
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 676
HpaII CCGG 2 cut(s) 34, 414
HphI GGTGA 2 cut(s) 59, 344
Hpy166II GTNNAC 3 cut(s) 570, 625, 711
Hpy188I TCNGA 3 cut(s) 28, 597, 784
Hpy188III TCNNGA 2 cut(s) 86, 425
Hpy8I GTNNAC 3 cut(s) 570, 625, 711
HpyAV CCTTC 4 cut(s) 23, 39, 469, 650
HpyCH4III ACNGT 3 cut(s) 584, 715, 747
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 7 cut(s) 141, 150, 279, 305, 327, 639, 750
HpyF10VI GCNNNNNNNGC 8 cut(s) 147, 195, 234, 256, 259, 276, 324, 428
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 4 cut(s) 209, 374, 653, 664
HspAI GCGC 2 cut(s) 174, 431
Kzo9I GATC 4 cut(s) 60, 88, 135, 402
LmnI GCTCC 2 cut(s) 6, 478
Lsp1109I GCAGC 5 cut(s) 262, 271, 302, 601, 756
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 787
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 121, 332
MalI GATC 4 cut(s) 62, 90, 137, 404
MboI GATC 4 cut(s) 60, 88, 135, 402
MboII GAAGA 3 cut(s) 74, 364, 412
MflI RGATCY 3 cut(s) 60, 88, 135
MhlI GDGCHC 1 cut(s) 287
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 3 cut(s) 240, 560, 727
MluNI TGGCCA 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 6 cut(s) 30, 46, 80, 493, 535, 754
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
MseI TTAA 6 cut(s) 233, 492, 519, 600, 687, 717
Msp20I TGGCCA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 315
MspI CCGG 2 cut(s) 34, 414
MspR9I CCNGG 2 cut(s) 414, 612
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 8 cut(s) 147, 195, 234, 256, 259, 276, 324, 428
NciI CCSGG 1 cut(s) 414
NdeII GATC 4 cut(s) 60, 88, 135, 402
NlaIII CATG 4 cut(s) 209, 374, 653, 664
NlaIV GGNNCC 1 cut(s) 557
NmuCI GTSAC 2 cut(s) 121, 332
NspI RCATGY 1 cut(s) 664
PaeI GCATGC 1 cut(s) 664
PfeI GAWTC 1 cut(s) 676
PkrI GCNGC 5 cut(s) 252, 261, 317, 591, 771
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 557
PspPI GGNCC 1 cut(s) 310
PsrI GAACNNNNNNTAC 2 cut(s) 692, 724
PstNI CAGNNNCTG 1 cut(s) 595
PsuI RGATCY 3 cut(s) 60, 88, 135
RsaI GTAC 5 cut(s) 225, 266, 345, 722, 756
RsaNI GTAC 5 cut(s) 224, 265, 344, 721, 755
SaqAI TTAA 6 cut(s) 233, 492, 519, 600, 687, 717
SatI GCNGC 5 cut(s) 251, 260, 316, 590, 770
Sau3AI GATC 4 cut(s) 60, 88, 135, 402
Sau96I GGNCC 1 cut(s) 310
ScaI AGTACT 1 cut(s) 266
ScrFI CCNGG 2 cut(s) 414, 612
SduI GDGCHC 1 cut(s) 287
SfaNI GCATC 1 cut(s) 490
SinI GGWCC 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SphI GCATGC 1 cut(s) 664
Sse9I AATT 3 cut(s) 240, 560, 727
SsiI CCGC 2 cut(s) 313, 777
SspI AATATT 3 cut(s) 360, 454, 516
SspMI CTAG 1 cut(s) 787
StyD4I CCNGG 2 cut(s) 412, 610
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 3 cut(s) 584, 715, 747
TaiI ACGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 674
TasI AATT 3 cut(s) 240, 560, 727
TatI WGTACW 2 cut(s) 264, 343
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 6 cut(s) 233, 492, 519, 600, 687, 717
Tru9I TTAA 6 cut(s) 233, 492, 519, 600, 687, 717
TscAI CASTG 5 cut(s) 103, 292, 307, 329, 718
TseFI GTSAC 2 cut(s) 121, 332
TseI GCWGC 5 cut(s) 250, 259, 315, 589, 769
Tsp45I GTSAC 2 cut(s) 121, 332
TspDTI ATGAA 2 cut(s) 401, 669
TspRI CASTG 5 cut(s) 103, 292, 307, 329, 718
VpaK11BI GGWCC 1 cut(s) 310
XagI CCTNNNNNAGG 1 cut(s) 539
XapI RAATTY 2 cut(s) 240, 727
XceI RCATGY 1 cut(s) 664
XspI CTAG 1 cut(s) 787
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.