Rorug01G0098000

DnaJ protein homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
16224568 .. 16227103
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0098000.1

Sequence Viewer

Length: 942 bp
ATGGTTGATCCACAACAAGATGGAAAAAAAAATGGGAATTATGAGCAGTGGACCAAGGAAGAGAGTGATACCTTATTAGAACTAATGGTTGATGCCGCCGTTAGGGGATGGCGTGCCAATAGTGGCATCTTAAGTAAGCAAACAGTGGAAGAAAGAATACTTCCTGTTCTTAATGCAAAACTTGGGTGTCACAAGACCTACAAAAACTACCAAAGCAGGGTTAGATGGTTTAAAGGTCGATGGAACTCTTACTCTACCCTTATGCGTTTTAGCTCTGGTTTTGGATTTGATTCAACTACAAAGAGGTTTACTGCTTCTAATGAAGTATGGGAGGAATACCTTAAGGCTCACCCAAAGGACACTGACTTGCGCTATGGGACATTTGATGATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCAGTTGGGAAAAACTCGGTCGGGTTGGGTAGTGTTACTGATGCAAGAACATTAGGTGTTGGTGAAGGTAGAGAGGCATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATCCATCAACTCATCCAACATCACCCCTCCAATCCCCTGAAATTTTGGAGGTTCCGAGGCGAGAAACAACCCAAAACAAAAGAAGTAGAACCGATTATGAAGGAAATTCTAACTCAATTGGGGGCACCCCTCAAAGTGGCGTTATGGAGAAGCTTGATAAACTTTACTCTGGTTTTGAAGTAATGATTAACTTACTAGAGAAAAGAGAGCGACAAAATAAAATTTGGGATGCTATCATGGAGATCCCAAACTTGGATGAAGCTACCGGTTTCAAGGCTCTTGAGTTGCTTGATACCAAAACAAAAAAAGATGGATTCTTGAATATGTCTCCTCAACAACGATCAAATTGGATATTCCACAAGTTGGGAGGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

313

Amino Acids

35.46

Weight (kDa)

5.36

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 113 2.6e-16 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 263 - 309 2e-22 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 928
AciI CCGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 2, 802
AcsI RAATTY 3 cut(s) 606, 670, 786
AfiI CCNNNNNNNGG 5 cut(s) 102, 217, 701, 817, 928
AflII CTTAAG 2 cut(s) 130, 341
AgeI ACCGGT 1 cut(s) 830
AgsI TTSAA 4 cut(s) 294, 743, 838, 886
AjuI GAANNNNNNNTTGG 4 cut(s) 396, 428, 531, 563
AluBI AGCT 3 cut(s) 273, 718, 827
AluI AGCT 3 cut(s) 273, 718, 827
Alw26I GTCTC 1 cut(s) 897
AlwI GGATC 2 cut(s) 2, 802
ApoI RAATTY 3 cut(s) 606, 670, 786
AsiGI ACCGGT 1 cut(s) 830
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 51, 551
AsuHPI GGTGA 3 cut(s) 341, 500, 579
AvaII GGWCC 2 cut(s) 51, 551
BaeGI GKGCMC 1 cut(s) 692
BanI GGYRCC 1 cut(s) 689
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BbsI GAAGAC 1 cut(s) 519
BccI CCATC 6 cut(s) 14, 102, 219, 234, 577, 869
BceAI ACGGC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 897
BfaI CTAG 1 cut(s) 761
BfrI CTTAAG 2 cut(s) 130, 341
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 51, 551
BmgT120I GGNCC 2 cut(s) 51, 551
BmiI GGNNCC 2 cut(s) 618, 691
BmsI GCATC 4 cut(s) 82, 135, 457, 784
BpiI GAAGAC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 866
BsaJI CCNNGG 2 cut(s) 54, 620
BsaWI WCCGGW 1 cut(s) 830
Bsc4I CCNNNNNNNGG 5 cut(s) 102, 217, 701, 817, 928
Bse118I RCCGGY 1 cut(s) 830
BseDI CCNNGG 2 cut(s) 54, 620
BseGI GGATG 4 cut(s) 113, 577, 799, 826
BseLI CCNNNNNNNGG 5 cut(s) 102, 217, 701, 817, 928
BseRI GAGGAG 1 cut(s) 885
BseSI GKGCMC 1 cut(s) 692
Bsh1285I CGRYCG 1 cut(s) 447
BshNI GGYRCC 1 cut(s) 689
BshTI ACCGGT 1 cut(s) 830
BsiEI CGRYCG 1 cut(s) 447
BsiSI CCGG 1 cut(s) 831
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 5 cut(s) 102, 217, 701, 817, 928
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 3 cut(s) 7, 807, 905
BspACI CCGC 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 618, 691
BspPI GGATC 2 cut(s) 2, 802
BspT107I GGYRCC 1 cut(s) 689
BspTI CTTAAG 2 cut(s) 130, 341
BsrFI RCCGGY 1 cut(s) 830
BssAI RCCGGY 1 cut(s) 830
BssECI CCNNGG 2 cut(s) 54, 620
BssMI GATC 3 cut(s) 7, 807, 905
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 2 cut(s) 130, 341
BstC8I GCNNGC 2 cut(s) 114, 505
BstF5I GGATG 4 cut(s) 113, 577, 799, 826
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 3 cut(s) 10, 810, 908
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 3 cut(s) 7, 807, 905
BstMCI CGRYCG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 807
BstYI RGATCY 1 cut(s) 807
BtsCI GGATG 4 cut(s) 113, 577, 799, 826
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 3 cut(s) 53, 150, 360
Cac8I GCNNGC 2 cut(s) 114, 505
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 830
Cfr13I GGNCC 2 cut(s) 51, 551
CspAI ACCGGT 1 cut(s) 830
CviAII CATG 2 cut(s) 504, 802
CviJI RGCY 5 cut(s) 273, 347, 718, 827, 842
CviKI_1 RGCY 5 cut(s) 273, 347, 718, 827, 842
DpnI GATC 3 cut(s) 9, 809, 907
DpnII GATC 3 cut(s) 7, 807, 905
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 51, 551
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 507, 805
FaqI GGGAC 1 cut(s) 391
FatI CATG 2 cut(s) 503, 801
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 4 cut(s) 120, 564, 806, 833
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 761
GlaI GCGC 1 cut(s) 371
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 831
HhaI GCGC 1 cut(s) 372
Hin1II CATG 2 cut(s) 507, 805
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 2 cut(s) 290, 879
HpaII CCGG 1 cut(s) 831
HphI GGTGA 3 cut(s) 341, 500, 579
Hpy166II GTNNAC 2 cut(s) 51, 309
Hpy188I TCNGA 1 cut(s) 621
Hpy188III TCNNGA 2 cut(s) 845, 883
Hpy8I GTNNAC 2 cut(s) 51, 309
HpyAV CCTTC 2 cut(s) 485, 659
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 176, 470, 507
Hsp92II CATG 2 cut(s) 507, 805
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 3 cut(s) 7, 807, 905
LpnPI CCDG 6 cut(s) 177, 202, 261, 615, 720, 844
LweI GCATC 4 cut(s) 82, 135, 457, 784
MaeI CTAG 1 cut(s) 761
MaeIII GTNAC 2 cut(s) 188, 460
MalI GATC 3 cut(s) 9, 809, 907
MboI GATC 3 cut(s) 7, 807, 905
MboII GAAGA 3 cut(s) 71, 161, 524
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 7 cut(s) 37, 405, 606, 670, 681, 786, 910
MmeI TCCRAC 2 cut(s) 529, 605
Mph1103I ATGCAT 1 cut(s) 509
MseI TTAA 5 cut(s) 131, 171, 231, 342, 753
MspCI CTTAAG 2 cut(s) 130, 341
MspI CCGG 1 cut(s) 831
MunI CAATTG 1 cut(s) 681
NdeII GATC 3 cut(s) 7, 807, 905
NlaIII CATG 2 cut(s) 507, 805
NlaIV GGNNCC 2 cut(s) 618, 691
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 509
NspI RCATGY 1 cut(s) 507
PaeI GCATGC 1 cut(s) 507
PfeI GAWTC 2 cut(s) 290, 879
PflMI CCANNNNNTGG 1 cut(s) 928
PinAI ACCGGT 1 cut(s) 830
PkrI GCNGC 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 618, 691
PspPI GGNCC 2 cut(s) 51, 551
PsuI RGATCY 1 cut(s) 807
SaqAI TTAA 5 cut(s) 131, 171, 231, 342, 753
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 7, 807, 905
Sau96I GGNCC 2 cut(s) 51, 551
SduI GDGCHC 1 cut(s) 692
SfaNI GCATC 4 cut(s) 82, 135, 457, 784
SinI GGWCC 2 cut(s) 51, 551
SmlI CTYRAG 3 cut(s) 130, 341, 845
SmoI CTYRAG 3 cut(s) 130, 341, 845
SphI GCATGC 1 cut(s) 507
Sse9I AATT 7 cut(s) 37, 405, 606, 670, 681, 786, 910
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 761
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 238
TaqII GACCGA 1 cut(s) 433
TasI AATT 7 cut(s) 37, 405, 606, 670, 681, 786, 910
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 2 cut(s) 290, 879
Tru1I TTAA 5 cut(s) 131, 171, 231, 342, 753
Tru9I TTAA 5 cut(s) 131, 171, 231, 342, 753
TscAI CASTG 3 cut(s) 53, 150, 367
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 336, 678, 837
TspRI CASTG 3 cut(s) 53, 150, 367
Van91I CCANNNNNTGG 1 cut(s) 928
Vha464I CTTAAG 2 cut(s) 130, 341
VpaK11BI GGWCC 2 cut(s) 51, 551
XapI RAATTY 3 cut(s) 606, 670, 786
XceI RCATGY 1 cut(s) 507
XspI CTAG 1 cut(s) 761
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.