Rh1AG121800

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000572
Physical Location & Seq
Forward (+)
22792201 .. 22796792
4592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG121800.1

Sequence Viewer

Length: 972 bp
ATGTTTGGGAGAGCTCCGAAGAAAAGCGACAACACCAAGTACTATGAGATCCTTGGAGTGCCTAAGAACGCGTCGCAGGATGATCTGAAGAAGGCTTACAGGAAAGCAGCCATCAAGAACCATCCTGATAAGGGTGGGGATCCAGAGAAGTTTAAAGAGTTGGCCCAAGCATACGAGGTTCTGAGTGATCCAGAGAAACGGGAAGTGTATGACCAATATGGCGAGGATGCACTCAAGGAAGGAATGGGTGCCGGAGGCGGCGGCCACGACCCATTTGATATATTCCAGTCCTTCTTTGGTGGCAGCCCATTTGGCGGGGGTGGCAGCAGCAGAGGCCGTAGGCAGAGAAGGGGAGAGGATGTGATCCATCCCCTTAAAGTTTCCCTGGAAGATCTATATAATGGGACATCCAAGAAGCTGTCTCTCTCTCGTAACAAAATCTGTGCCAAGTGCAAGGGTAAAGGGTCAAAGTCGGGTGCTTCAATGAAGTGTCCTGGTTGCCAAGGGTCTGGAATGAAAGTCTCTATTAGACATCTTGGACCTTCCATGATCCAGCAAATGCAGCACCCATGCAATGAGTGCAAGGGTACCGGTGAAACCATCAATGACAAGGATCGCTGCCCGCAGTGTAAGGGTGAGAAAGTTGTTCAGGAAAAGAAAGTATTGGAGGTTCATGTGGAGAAGGGCATGCAAAATGGACAGAGAATCACATTCCCTGGTGAAGCTGATGAAGCGCCTGACACCATCACAGGGGATATTGTTTTTGTCCTGCAACAAAAGGAACACCCTAAGTTTAAGCGAAAGGGTGATGACCTATTCTACGAACATACGCTGTCCCTTATGGAGGCACTCTGCGGCTTCCAATTTATCTTCACGCATTTAGATGGCAGGCAACTCCTCATCAAATCTCATCCTGGAGAAGTTGTCAAGCCTGGTAAGTTACATCTGTTCTCTTCTCATTTTTGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

323

Amino Acids

35.74

Weight (kDa)

8.84

Isoelectric Point (pI)

27.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 13 - 71 9.6e-24 DnaJ domain
DnaJ_C PF01556 123 - 300 4.4e-29 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 148 - 214 8.6e-16 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 587
AccB1I GGYRCC 2 cut(s) 248, 587
AccII CGCG 1 cut(s) 71
AciI CCGC 5 cut(s) 258, 261, 315, 623, 855
AclWI GGATC 7 cut(s) 43, 134, 147, 182, 358, 544, 621
AcoI YGGCCR 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 2 cut(s) 41, 589
AfiI CCNNNNNNNGG 4 cut(s) 131, 314, 750, 844
AflIII ACRYGT 1 cut(s) 69
AgeI ACCGGT 1 cut(s) 590
AgsI TTSAA 1 cut(s) 483
AjnI CCWGG 5 cut(s) 384, 493, 715, 913, 931
AluBI AGCT 3 cut(s) 14, 418, 725
AluI AGCT 3 cut(s) 14, 418, 725
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 426, 526
AlwI GGATC 7 cut(s) 43, 134, 147, 182, 358, 544, 621
AoxI GGCC 3 cut(s) 162, 262, 334
ApeKI GCWGC 6 cut(s) 107, 303, 324, 327, 562, 618
AsiGI ACCGGT 1 cut(s) 590
Asp718I GGTACC 1 cut(s) 587
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 2 cut(s) 163, 539
AsuHPI GGTGA 4 cut(s) 605, 647, 731, 818
AvaII GGWCC 1 cut(s) 539
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 2 cut(s) 248, 587
BanII GRGCYC 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 6 cut(s) 119, 315, 336, 339, 574, 605
BccI CCATC 6 cut(s) 119, 129, 375, 608, 752, 878
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 5 cut(s) 386, 495, 717, 915, 933
BcoDI GTCTC 2 cut(s) 426, 526
BfaI CTAG 1 cut(s) 970
BfoI RGCGCY 1 cut(s) 737
BglI GCCNNNNNGGC 1 cut(s) 312
BglII AGATCT 1 cut(s) 391
BisI GCNGC 9 cut(s) 108, 259, 262, 304, 325, 328, 563, 619, 856
BlsI GCNGC 9 cut(s) 109, 260, 263, 305, 326, 329, 564, 620, 857
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 5 cut(s) 386, 495, 717, 915, 933
Bme18I GGWCC 1 cut(s) 539
BmgT120I GGNCC 2 cut(s) 163, 539
BmiI GGNNCC 3 cut(s) 141, 250, 589
BmrFI CCNGG 5 cut(s) 386, 495, 717, 915, 933
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 936
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 4 cut(s) 52, 384, 502, 715
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 909, 939
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 314, 750, 844
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 580
BseBI CCWGG 5 cut(s) 386, 495, 717, 915, 933
BseDI CCNNGG 4 cut(s) 52, 384, 502, 715
BseGI GGATG 7 cut(s) 85, 121, 232, 364, 367, 407, 910
BseLI CCNNNNNNNGG 4 cut(s) 131, 314, 750, 844
BseMI GCAATG 1 cut(s) 580
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 887
BseXI GCAGC 6 cut(s) 119, 315, 336, 339, 574, 605
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 164, 264, 336
BshNI GGYRCC 2 cut(s) 248, 587
BshTI ACCGGT 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 252, 591
BslFI GGGAC 2 cut(s) 418, 820
BslI CCNNNNNNNGG 4 cut(s) 131, 314, 750, 844
BsmAI GTCTC 2 cut(s) 426, 526
BsmFI GGGAC 2 cut(s) 418, 820
BsnI GGCC 3 cut(s) 164, 264, 336
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 8 cut(s) 48, 82, 139, 187, 363, 391, 549, 613
BspACI CCGC 5 cut(s) 258, 261, 315, 623, 855
BspANI GGCC 3 cut(s) 164, 264, 336
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 141, 250, 589
BspPI GGATC 7 cut(s) 43, 134, 147, 182, 358, 544, 621
BspT107I GGYRCC 2 cut(s) 248, 587
BsrDI GCAATG 1 cut(s) 580
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 4 cut(s) 52, 384, 502, 715
BssMI GATC 8 cut(s) 48, 82, 139, 187, 363, 391, 549, 613
BssT1I CCWWGG 2 cut(s) 52, 502
Bst2UI CCWGG 5 cut(s) 386, 495, 717, 915, 933
Bst6I CTCTTC 1 cut(s) 958
BstAPI GCANNNNNTGC 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 623, 689, 890
BstDEI CTNAG 3 cut(s) 63, 182, 789
BstENI CCTNNNNNAGG 1 cut(s) 842
BstF5I GGATG 7 cut(s) 85, 121, 232, 364, 367, 407, 910
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 8 cut(s) 51, 85, 142, 190, 366, 394, 552, 616
BstMAI GTCTC 2 cut(s) 426, 526
BstMBI GATC 8 cut(s) 48, 82, 139, 187, 363, 391, 549, 613
BstMWI GCNNNNNNNGC 6 cut(s) 312, 321, 333, 562, 579, 731
BstNI CCWGG 5 cut(s) 386, 495, 717, 915, 933
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 5 cut(s) 384, 493, 715, 913, 931
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 6 cut(s) 119, 315, 336, 339, 574, 605
BstX2I RGATCY 3 cut(s) 48, 139, 391
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 3 cut(s) 48, 139, 391
BsuRI GGCC 3 cut(s) 164, 264, 336
BtsCI GGATG 7 cut(s) 85, 121, 232, 364, 367, 407, 910
BtsI GCAGTG 1 cut(s) 632
BtsIMutI CAGTG 1 cut(s) 632
Cac8I GCNNGC 3 cut(s) 623, 689, 890
CfoI GCGC 1 cut(s) 736
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 2 cut(s) 163, 539
CseI GACGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 40, 588
CspAI ACCGGT 1 cut(s) 590
CviAII CATG 4 cut(s) 547, 570, 674, 688
CviQI GTAC 2 cut(s) 40, 588
DdeI CTNAG 3 cut(s) 63, 182, 789
DpnI GATC 8 cut(s) 50, 84, 141, 189, 365, 393, 551, 615
DpnII GATC 8 cut(s) 48, 82, 139, 187, 363, 391, 549, 613
DraI TTTAAA 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 958
EarI CTCTTC 1 cut(s) 958
Ecl136II GAGCTC 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 52, 502
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 539
Eco53kI GAGCTC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 14
EcoNI CCTNNNNNAGG 1 cut(s) 842
EcoRII CCWGG 5 cut(s) 384, 493, 715, 913, 931
EcoT14I CCWWGG 2 cut(s) 52, 502
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 52, 502
FaeI CATG 4 cut(s) 550, 573, 677, 691
FaqI GGGAC 2 cut(s) 418, 820
FatI CATG 4 cut(s) 546, 569, 673, 687
FauI CCCGC 2 cut(s) 308, 630
Fnu4HI GCNGC 9 cut(s) 108, 259, 262, 304, 325, 328, 563, 619, 856
FokI GGATG 7 cut(s) 92, 108, 239, 354, 371, 394, 897
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 9 cut(s) 108, 259, 262, 304, 325, 328, 563, 619, 856
FspBI CTAG 1 cut(s) 970
GlaI GCGC 1 cut(s) 735
GluI GCNGC 9 cut(s) 108, 259, 262, 304, 325, 328, 563, 619, 856
GsuI CTGGAG 1 cut(s) 936
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 3 cut(s) 164, 264, 336
HapII CCGG 2 cut(s) 252, 591
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 736
Hin1II CATG 4 cut(s) 550, 573, 677, 691
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HinfI GANTC 1 cut(s) 705
HpaII CCGG 2 cut(s) 252, 591
HphI GGTGA 4 cut(s) 605, 647, 731, 818
Hpy188I TCNGA 3 cut(s) 18, 87, 183
Hpy188III TCNNGA 6 cut(s) 115, 125, 143, 191, 510, 650
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 6 cut(s) 85, 233, 301, 342, 552, 676
HpyCH4V TGCA 7 cut(s) 230, 453, 562, 573, 582, 691, 772
HpyF10VI GCNNNNNNNGC 6 cut(s) 312, 321, 333, 562, 579, 731
HpyF3I CTNAG 3 cut(s) 63, 182, 789
Hsp92II CATG 4 cut(s) 550, 573, 677, 691
HspAI GCGC 1 cut(s) 734
KpnI GGTACC 1 cut(s) 591
Kzo9I GATC 8 cut(s) 48, 82, 139, 187, 363, 391, 549, 613
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 6 cut(s) 119, 315, 336, 339, 574, 605
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 970
MaeIII GTNAC 3 cut(s) 431, 939, 965
MalI GATC 8 cut(s) 50, 84, 141, 189, 365, 393, 551, 615
MboI GATC 8 cut(s) 48, 82, 139, 187, 363, 391, 549, 613
MboII GAAGA 5 cut(s) 31, 100, 401, 862, 945
MflI RGATCY 3 cut(s) 48, 139, 391
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 1 cut(s) 863
MluI ACGCGT 1 cut(s) 69
MnlI CCTC 8 cut(s) 169, 217, 248, 326, 349, 661, 838, 908
MseI TTAA 3 cut(s) 153, 375, 795
MslI CAYNNNNRTG 2 cut(s) 882, 963
MspI CCGG 2 cut(s) 252, 591
MspR9I CCNGG 5 cut(s) 386, 495, 717, 915, 933
MvaI CCWGG 5 cut(s) 386, 495, 717, 915, 933
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 6 cut(s) 312, 321, 333, 562, 579, 731
NdeII GATC 8 cut(s) 48, 82, 139, 187, 363, 391, 549, 613
NlaIII CATG 4 cut(s) 550, 573, 677, 691
NlaIV GGNNCC 3 cut(s) 141, 250, 589
NmuCI GTSAC 1 cut(s) 965
NspI RCATGY 1 cut(s) 691
PaeI GCATGC 1 cut(s) 691
PfeI GAWTC 1 cut(s) 705
PfoI TCCNGGA 1 cut(s) 913
PinAI ACCGGT 1 cut(s) 590
PkrI GCNGC 9 cut(s) 109, 260, 263, 305, 326, 329, 564, 620, 857
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 5 cut(s) 384, 493, 715, 913, 931
PspGI CCWGG 5 cut(s) 384, 493, 715, 913, 931
PspN4I GGNNCC 3 cut(s) 141, 250, 589
PspPI GGNCC 2 cut(s) 163, 539
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PsuI RGATCY 3 cut(s) 48, 139, 391
RsaI GTAC 2 cut(s) 41, 589
RsaNI GTAC 2 cut(s) 40, 588
RseI CAYNNNNRTG 2 cut(s) 882, 963
SacI GAGCTC 1 cut(s) 16
SaqAI TTAA 3 cut(s) 153, 375, 795
SatI GCNGC 9 cut(s) 108, 259, 262, 304, 325, 328, 563, 619, 856
Sau3AI GATC 8 cut(s) 48, 82, 139, 187, 363, 391, 549, 613
Sau96I GGNCC 2 cut(s) 163, 539
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 5 cut(s) 386, 495, 717, 915, 933
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 16, 180, 420, 544, 672, 727, 816
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 539
SmiMI CAYNNNNRTG 2 cut(s) 882, 963
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SphI GCATGC 1 cut(s) 691
Sse9I AATT 1 cut(s) 863
SsiI CCGC 5 cut(s) 258, 261, 315, 623, 855
SspMI CTAG 1 cut(s) 970
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 5 cut(s) 384, 493, 715, 913, 931
StyI CCWWGG 2 cut(s) 52, 502
TasI AATT 1 cut(s) 863
TatI WGTACW 1 cut(s) 39
TauI GCSGC 3 cut(s) 261, 264, 858
TfiI GAWTC 1 cut(s) 705
Tru1I TTAA 3 cut(s) 153, 375, 795
Tru9I TTAA 3 cut(s) 153, 375, 795
TscAI CASTG 1 cut(s) 632
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 6 cut(s) 107, 303, 324, 327, 562, 618
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 4 cut(s) 500, 530, 662, 744
TspRI CASTG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 539
XagI CCTNNNNNAGG 1 cut(s) 842
XceI RCATGY 1 cut(s) 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 1 cut(s) 970
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.