Prupe.2G072900_v2.0.a1

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000572
Physical Location & Seq
Reverse (-)
11011775 .. 11015592
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G072900.3

Sequence Viewer

Length: 1254 bp
ATGTTTGGGAGAGCTCCAAAGAAAAGCGATAACACGAAGTACTATGAGATCCTTGGAGTGTCGAAGACCGCTTCGCAAGATGATCTAAAGAAGGCTTACAGAAAAGCCGCCATCAAAAACCATCCTGATAAGGGCGGTGATCCTGAAAAGTTTAAAGAGTTGGCCCAAGCATACGAGGTTCTGAGTGACCCAGAGAAACGAGAGATCTATGACCAATATGGCGAGGACGCGCTCAAAGAAGGAATGGGTGGCGGAGGTGGTGGTCACGACCCATTTGATATTTTCCAATCCTTCTTTGGTGGAAGCCCTTTTGGTGGGGGTGGAAGCAGCAGAGGCCGAAGGCAGAGAAGGGGAGAGGATGTGATCCATCCCCTCAAGGTTTCTTTGGAAGATCTCTACAATGGGACATCCAAGAAGCTTTCTCTCTCTCGCAACATAATCTGCTCCAAGTGCAGGGGTAAAGGGTCAAAGTCAGGTGCTTCTTTGAAATGTCCTGGGTGCCAAGGTTCTGGAATGAAAGTCTCTATTAGACACCTCGGCCCCTCCATGATCCAGCAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGGGGAGACCATTAATGACAAGGATCGCTGCACACAATGTAAGGGTGAGAAGGTTGTTCAGGAAAAGAAAGTCTTGGAAGTCATTGTGGAGAAGGGTATGCAAAATGGTCAGAGGATCACATTCCCTGGCGAAGCTGATGAAGCGCCAGACACCATCACGGGGGATATTGTTTTTGTCCTACAACAAAAAGAGCACCCAAAATTTAAGCGAAAGGGTGATGACCTGTTCTTTGAGCATACCTTATCCCTCGTGGAAGCACTCTGTGGCTTCCACTTTGTATTGACACATTTAGATGGAAGACAGCTCCTCATCAAATCCCAACCTGGTGAAGTTGTTAAGCCAGATCAATTCAAGGCTATAAATGATGAGGGTATGCCAATGTACCAGAGACCATTCATGAAAGGTAAATTGTATATTCATTTCACAGTGGAGTTCCCCGACTCACTAAACCCAGAACAGTGCAAGGGCCTGGAGGCTGTGCTACCTCCCAGGTCTTCTGCACAGCTTACCGACATGGAGCTGGATGAGTGCGAGGAGACTACACTGCATGATGTGAACATAGAGGAGGAAATGCGTCGAAAGCAAGCACAGGCCCAAGAGGCTTATGATGAGGATGACGATATGCATGGTGGTGCCCAGAGGGTTCAATGCGCGCAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

418

Amino Acids

46.46

Weight (kDa)

6.11

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 498, 1223
AccII CGCG 2 cut(s) 230, 1244
AciI CCGC 4 cut(s) 69, 108, 135, 252
AclWI GGATC 6 cut(s) 43, 134, 358, 544, 621, 713
AcsI RAATTY 1 cut(s) 791
AdeI CACNNNGTG 1 cut(s) 854
AfaI GTAC 3 cut(s) 41, 589, 974
AfiI CCNNNNNNNGG 4 cut(s) 131, 314, 453, 750
AgsI TTSAA 3 cut(s) 487, 943, 1238
AjnI CCWGG 5 cut(s) 493, 715, 913, 1059, 1079
AluBI AGCT 6 cut(s) 14, 418, 725, 895, 1096, 1111
AluI AGCT 6 cut(s) 14, 418, 725, 895, 1096, 1111
Alw21I GWGCWC 2 cut(s) 16, 786
Alw26I GTCTC 4 cut(s) 526, 590, 973, 1121
AlwI GGATC 6 cut(s) 43, 134, 358, 544, 621, 713
AoxI GGCC 5 cut(s) 162, 334, 538, 1057, 1182
ApeKI GCWGC 4 cut(s) 327, 562, 618, 1246
ApoI RAATTY 1 cut(s) 791
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 4 cut(s) 232, 736, 1244, 1246
AspS9I GGNCC 4 cut(s) 163, 539, 1057, 1183
AsuHPI GGTGA 4 cut(s) 149, 647, 818, 929
BaeGI GKGCMC 1 cut(s) 1228
BanI GGYRCC 2 cut(s) 498, 1223
BanII GRGCYC 1 cut(s) 16
BauI CACGAG 1 cut(s) 839
BbsI GAAGAC 3 cut(s) 71, 895, 1077
Bbv12I GWGCWC 2 cut(s) 16, 786
BbvI GCAGC 3 cut(s) 339, 574, 605
BccI CCATC 5 cut(s) 119, 129, 375, 752, 878
BciT130I CCWGG 5 cut(s) 495, 717, 915, 1061, 1081
BcoDI GTCTC 4 cut(s) 526, 590, 973, 1121
BfoI RGCGCY 1 cut(s) 737
BglI GCCNNNNNGGC 1 cut(s) 1190
BglII AGATCT 2 cut(s) 204, 391
BisI GCNGC 5 cut(s) 108, 328, 563, 619, 1247
BlsI GCNGC 5 cut(s) 109, 329, 564, 620, 1248
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 5 cut(s) 495, 717, 915, 1061, 1081
BmgT120I GGNCC 4 cut(s) 163, 539, 1057, 1183
BmiI GGNNCC 3 cut(s) 500, 541, 1225
BmrFI CCNGG 5 cut(s) 495, 717, 915, 1061, 1081
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 600
BpiI GAAGAC 3 cut(s) 71, 895, 1077
BpmI CTGGAG 1 cut(s) 1082
BpuEI CTTGAG 1 cut(s) 359
BsaI GGTCTC 2 cut(s) 590, 973
BsaJI CCNNGG 6 cut(s) 52, 494, 502, 535, 715, 1079
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 314, 453, 750
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 1 cut(s) 580
BseBI CCWGG 5 cut(s) 495, 717, 915, 1061, 1081
BseDI CCNNGG 6 cut(s) 52, 494, 502, 535, 715, 1079
BseGI GGATG 7 cut(s) 121, 364, 367, 407, 565, 1120, 1210
BseLI CCNNNNNNNGG 4 cut(s) 131, 314, 453, 750
BseMI GCAATG 1 cut(s) 580
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 595
BsePI GCGCGC 1 cut(s) 1242
BseRI GAGGAG 3 cut(s) 887, 1139, 1169
BseSI GKGCMC 1 cut(s) 1228
BseXI GCAGC 3 cut(s) 339, 574, 605
BsgI GTGCAG 3 cut(s) 472, 604, 1074
Bsh1236I CGCG 2 cut(s) 230, 1244
BshFI GGCC 5 cut(s) 164, 336, 540, 1059, 1184
BshNI GGYRCC 2 cut(s) 498, 1223
BsiHKAI GWGCWC 2 cut(s) 16, 786
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 4 cut(s) 131, 314, 453, 750
BsmAI GTCTC 4 cut(s) 526, 590, 973, 1121
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 5 cut(s) 164, 336, 540, 1059, 1184
Bso31I GGTCTC 2 cut(s) 590, 973
Bsp1286I GDGCHC 3 cut(s) 16, 786, 1228
BspACI CCGC 4 cut(s) 69, 108, 135, 252
BspANI GGCC 5 cut(s) 164, 336, 540, 1059, 1184
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 2 cut(s) 230, 1244
BspHI TCATGA 1 cut(s) 987
BspLI GGNNCC 3 cut(s) 500, 541, 1225
BspPI GGATC 6 cut(s) 43, 134, 358, 544, 621, 713
BspT107I GGYRCC 2 cut(s) 498, 1223
BspTNI GGTCTC 2 cut(s) 590, 973
BsrDI GCAATG 1 cut(s) 580
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 6 cut(s) 52, 494, 502, 535, 715, 1079
BssHII GCGCGC 1 cut(s) 1242
BssSI CACGAG 1 cut(s) 839
BssT1I CCWWGG 2 cut(s) 52, 502
Bst2BI CACGAG 1 cut(s) 839
Bst2UI CCWGG 5 cut(s) 495, 717, 915, 1061, 1081
Bst4CI ACNGT 2 cut(s) 1018, 1050
BstAPI GCANNNNNTGC 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 1176, 1244
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 7 cut(s) 121, 364, 367, 407, 565, 1120, 1210
BstFNI CGCG 2 cut(s) 230, 1244
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 4 cut(s) 232, 736, 1244, 1246
BstMAI GTCTC 4 cut(s) 526, 590, 973, 1121
BstMWI GCNNNNNNNGC 7 cut(s) 333, 450, 562, 579, 731, 1171, 1190
BstNI CCWGG 5 cut(s) 495, 717, 915, 1061, 1081
BstSCI CCNGG 5 cut(s) 493, 715, 913, 1059, 1079
BstSLI GKGCMC 1 cut(s) 1228
BstUI CGCG 2 cut(s) 230, 1244
BstV1I GCAGC 3 cut(s) 339, 574, 605
BstV2I GAAGAC 3 cut(s) 71, 895, 1077
BstX2I RGATCY 3 cut(s) 48, 204, 391
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 3 cut(s) 48, 204, 391
BsuRI GGCC 5 cut(s) 164, 336, 540, 1059, 1184
BtsCI GGATG 7 cut(s) 121, 364, 367, 407, 565, 1120, 1210
BtsI GCAGTG 1 cut(s) 1133
BtsIMutI CAGTG 3 cut(s) 1023, 1055, 1133
Cac8I GCNNGC 2 cut(s) 1176, 1244
CciI TCATGA 1 cut(s) 987
CfoI GCGC 4 cut(s) 232, 736, 1244, 1246
Cfr13I GGNCC 4 cut(s) 163, 539, 1057, 1183
CseI GACGC 2 cut(s) 236, 1154
CsiI ACCWGGT 1 cut(s) 913
Csp6I GTAC 3 cut(s) 40, 588, 973
CviAII CATG 5 cut(s) 547, 988, 1105, 1139, 1217
CviQI GTAC 3 cut(s) 40, 588, 973
DdeI CTNAG 1 cut(s) 182
DraI TTTAAA 1 cut(s) 154
DraIII CACNNNGTG 1 cut(s) 854
EciI GGCGGA 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 52, 502
Eco24I GRGCYC 1 cut(s) 16
Eco31I GGTCTC 2 cut(s) 590, 973
Eco53kI GAGCTC 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 1057
EcoRII CCWGG 5 cut(s) 493, 715, 913, 1059, 1079
EcoT14I CCWWGG 2 cut(s) 52, 502
EcoT22I ATGCAT 1 cut(s) 1218
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 52, 502
FaeI CATG 5 cut(s) 550, 991, 1108, 1142, 1220
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FaqI GGGAC 1 cut(s) 418
FatI CATG 5 cut(s) 546, 987, 1104, 1138, 1216
Fnu4HI GCNGC 5 cut(s) 108, 328, 563, 619, 1247
FokI GGATG 7 cut(s) 108, 354, 371, 394, 552, 1127, 1217
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 5 cut(s) 108, 328, 563, 619, 1247
GlaI GCGC 4 cut(s) 231, 735, 1243, 1245
GluI GCNGC 5 cut(s) 108, 328, 563, 619, 1247
GsuI CTGGAG 1 cut(s) 1082
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 5 cut(s) 164, 336, 540, 1059, 1184
HgaI GACGC 2 cut(s) 236, 1154
HhaI GCGC 4 cut(s) 232, 736, 1244, 1246
Hin1II CATG 5 cut(s) 550, 991, 1108, 1142, 1220
Hin6I GCGC 4 cut(s) 230, 734, 1242, 1244
HinP1I GCGC 4 cut(s) 230, 734, 1242, 1244
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 1 cut(s) 1031
HphI GGTGA 4 cut(s) 149, 647, 818, 929
Hpy166II GTNNAC 1 cut(s) 1147
Hpy188I TCNGA 2 cut(s) 183, 702
Hpy188III TCNNGA 6 cut(s) 125, 143, 266, 510, 650, 988
Hpy8I GTNNAC 1 cut(s) 1147
Hpy99I CGWCG 1 cut(s) 1170
HpyAV CCTTC 7 cut(s) 85, 233, 301, 333, 342, 634, 676
HpyCH4III ACNGT 2 cut(s) 1018, 1050
HpyF10VI GCNNNNNNNGC 7 cut(s) 333, 450, 562, 579, 731, 1171, 1190
HpyF3I CTNAG 1 cut(s) 182
Hsp92II CATG 5 cut(s) 550, 991, 1108, 1142, 1220
HspAI GCGC 4 cut(s) 230, 734, 1242, 1244
LmnI GCTCC 4 cut(s) 19, 449, 900, 1108
Lsp1109I GCAGC 3 cut(s) 339, 574, 605
LweI GCATC 1 cut(s) 574
MabI ACCWGGT 1 cut(s) 913
MaeIII GTNAC 2 cut(s) 185, 263
MboII GAAGA 4 cut(s) 76, 401, 900, 1077
MflI RGATCY 3 cut(s) 48, 204, 391
MhlI GDGCHC 3 cut(s) 16, 786, 1228
MluCI AATT 3 cut(s) 791, 938, 998
MlyI GAGTC 1 cut(s) 1025
Mph1103I ATGCAT 1 cut(s) 1218
MseI TTAA 4 cut(s) 153, 603, 795, 927
MslI CAYNNNNRTG 2 cut(s) 882, 1221
MspR9I CCNGG 5 cut(s) 495, 717, 915, 1061, 1081
MvaI CCWGG 5 cut(s) 495, 717, 915, 1061, 1081
MvnI CGCG 2 cut(s) 230, 1244
MwoI GCNNNNNNNGC 7 cut(s) 333, 450, 562, 579, 731, 1171, 1190
NlaIII CATG 5 cut(s) 550, 991, 1108, 1142, 1220
NlaIV GGNNCC 3 cut(s) 500, 541, 1225
NmeAIII GCCGAG 1 cut(s) 516
NmuCI GTSAC 2 cut(s) 185, 263
NsiI ATGCAT 1 cut(s) 1218
PagI TCATGA 1 cut(s) 987
PauI GCGCGC 1 cut(s) 1242
PkrI GCNGC 5 cut(s) 109, 329, 564, 620, 1248
PleI GAGTC 1 cut(s) 1025
PpsI GAGTC 1 cut(s) 1025
PshBI ATTAAT 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 5 cut(s) 493, 715, 913, 1059, 1079
PspGI CCWGG 5 cut(s) 493, 715, 913, 1059, 1079
PspN4I GGNNCC 3 cut(s) 500, 541, 1225
PspPI GGNCC 4 cut(s) 163, 539, 1057, 1183
PsuI RGATCY 3 cut(s) 48, 204, 391
PteI GCGCGC 1 cut(s) 1242
RsaI GTAC 3 cut(s) 41, 589, 974
RsaNI GTAC 3 cut(s) 40, 588, 973
RseI CAYNNNNRTG 2 cut(s) 882, 1221
SacI GAGCTC 1 cut(s) 16
SaqAI TTAA 4 cut(s) 153, 603, 795, 927
SatI GCNGC 5 cut(s) 108, 328, 563, 619, 1247
Sau96I GGNCC 4 cut(s) 163, 539, 1057, 1183
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 1 cut(s) 1025
ScrFI CCNGG 5 cut(s) 495, 717, 915, 1061, 1081
SduI GDGCHC 3 cut(s) 16, 786, 1228
SexAI ACCWGGT 1 cut(s) 913
SfaNI GCATC 1 cut(s) 574
SmiMI CAYNNNNRTG 2 cut(s) 882, 1221
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 3 cut(s) 791, 938, 998
SsiI CCGC 4 cut(s) 69, 108, 135, 252
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 5 cut(s) 493, 715, 913, 1059, 1079
StyI CCWWGG 2 cut(s) 52, 502
TaaI ACNGT 2 cut(s) 1018, 1050
TaqI TCGA 2 cut(s) 62, 1168
TasI AATT 3 cut(s) 791, 938, 998
TatI WGTACW 1 cut(s) 39
TauI GCSGC 1 cut(s) 110
Tru1I TTAA 4 cut(s) 153, 603, 795, 927
Tru9I TTAA 4 cut(s) 153, 603, 795, 927
TscAI CASTG 3 cut(s) 1023, 1055, 1140
TseFI GTSAC 2 cut(s) 185, 263
TseI GCWGC 4 cut(s) 327, 562, 618, 1246
Tsp45I GTSAC 2 cut(s) 185, 263
TspDTI ATGAA 5 cut(s) 530, 744, 976, 998, 1004
TspRI CASTG 3 cut(s) 1023, 1055, 1140
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 1 cut(s) 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.