Rorug05G0242300

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000572
Physical Location & Seq
Forward (+)
25854765 .. 25855466
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0242300.1

Sequence Viewer

Length: 600 bp
ATGCATCGTTCAACAGCTACTAGCTTCCAACGCTACCTTTTCAGCCATCAAAACCAAATCCAGTTGGCCAAACACGTTACTAAACCCTGTGATGTTTTCCTCAATCACAGAGGGATAGACACAAAGCGAACAATAGTATCTTTGCTTTACGACCATCTTTCTCGACTAAACCTGCGGCCTTTCTTGGACAACAAGAATATGAAACCTGGAGATAAACTGTTTGATAAGATTGATAGTGCAATAAGGAGTTGCAAGGTCGGTGTTGCTGTGTTCTCGCCGCGCTATTGTGATTCTTACTTTTGCCTTCATGAACTAGCCATGTTCATGGAGTCCAATAAGAAGGTGATTCCTATATTCTGTGACATTAAGCCCTCTCAGCTTCGTGTCGTGGACAATGGGCAATGTGATGTGGAGAAGCTGAGAAGGTTTAGGTCGGCTCTTGAACAGGCTAAAAGCACCGCAGGTCTGACGTTCAACTCCTCAGAAGGGAATTTGGCAGATGTTGTGACAACTGCTGCAAATTGTGTAATCAACAGCCTGATCGAGATCGATGACCAAAAGAATTCTATGCAGCGTCCAAAGACTCCATTTCATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

199

Amino Acids

22.71

Weight (kDa)

9.21

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 31 - 128 7.3e-19 TIR domain
TIR_2 PF13676 32 - 131 3.7e-17 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 180, 452
AccII CGCG 1 cut(s) 280
AciI CCGC 3 cut(s) 175, 278, 459
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 2 cut(s) 490, 562
AfiI CCNNNNNNNGG 1 cut(s) 486
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 3 cut(s) 12, 443, 475
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 4 cut(s) 17, 24, 379, 418
AluI AGCT 4 cut(s) 17, 24, 379, 418
AoxI GGCC 2 cut(s) 66, 176
ApeKI GCWGC 2 cut(s) 515, 571
ApoI RAATTY 2 cut(s) 490, 562
AspLEI GCGC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 355
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BalI TGGCCA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 502, 583
BccI CCATC 2 cut(s) 54, 162
BciT130I CCWGG 1 cut(s) 207
BfaI CTAG 2 cut(s) 21, 314
BfuAI ACCTGC 2 cut(s) 180, 452
BisI GCNGC 4 cut(s) 176, 278, 516, 572
BlsI GCNGC 4 cut(s) 177, 279, 517, 573
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 545
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 549
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 3 cut(s) 389, 410, 495
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 469
BseXI GCAGC 2 cut(s) 502, 583
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 68, 178
BshVI ATCGAT 1 cut(s) 549
BslI CCNNNNNNNGG 1 cut(s) 486
BsnI GGCC 2 cut(s) 68, 178
Bsp143I GATC 2 cut(s) 540, 546
BspACI CCGC 3 cut(s) 175, 278, 459
BspANI GGCC 2 cut(s) 68, 178
BspCNI CTCAG 3 cut(s) 388, 411, 494
BspDI ATCGAT 1 cut(s) 549
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 307
BspMI ACCTGC 2 cut(s) 180, 452
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 1 cut(s) 61
BssMI GATC 2 cut(s) 540, 546
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 219
BstDEI CTNAG 3 cut(s) 375, 419, 481
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 2 cut(s) 543, 549
BstMBI GATC 2 cut(s) 540, 546
BstMWI GCNNNNNNNGC 2 cut(s) 30, 376
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 502, 583
BstXI CCANNNNNNTGG 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 549
BsuRI GGCC 2 cut(s) 68, 178
BsuTUI ATCGAT 1 cut(s) 549
BveI ACCTGC 2 cut(s) 180, 452
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 282
ClaI ATCGAT 1 cut(s) 549
CseI GACGC 1 cut(s) 563
CviAII CATG 3 cut(s) 308, 319, 325
DdeI CTNAG 3 cut(s) 375, 419, 481
DpnI GATC 2 cut(s) 542, 548
DpnII GATC 2 cut(s) 540, 546
EaeI YGGCCR 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 311, 322, 328
FaiI YATR 7 cut(s) 200, 309, 320, 326, 353, 569, 598
FatI CATG 3 cut(s) 307, 318, 324
Fnu4HI GCNGC 4 cut(s) 176, 278, 516, 572
Fsp4HI GCNGC 4 cut(s) 176, 278, 516, 572
FspBI CTAG 2 cut(s) 21, 314
GlaI GCGC 1 cut(s) 281
GluI GCNGC 4 cut(s) 176, 278, 516, 572
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 2 cut(s) 68, 178
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 282
Hin1II CATG 3 cut(s) 311, 322, 328
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 4 cut(s) 290, 329, 346, 583
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 468, 484
Hpy188III TCNNGA 4 cut(s) 162, 308, 440, 544
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 4 cut(s) 314, 334, 417, 479
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 75, 470
HpyCH4V TGCA 5 cut(s) 4, 239, 252, 518, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 376
HpyF3I CTNAG 3 cut(s) 375, 419, 481
HpySE526I ACGT 2 cut(s) 75, 470
Hsp92II CATG 3 cut(s) 311, 322, 328
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 540, 546
LpnPI CCDG 8 cut(s) 74, 100, 185, 192, 219, 431, 447, 551
Lsp1109I GCAGC 2 cut(s) 502, 583
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 21, 314
MaeII ACGT 2 cut(s) 75, 470
MaeIII GTNAC 3 cut(s) 76, 359, 505
MalI GATC 2 cut(s) 542, 548
MboI GATC 2 cut(s) 540, 546
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 3 cut(s) 490, 520, 562
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 2 cut(s) 338, 577
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 4 cut(s) 104, 110, 382, 490
Mox20I TGGCCA 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 68
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 30, 376
NdeII GATC 2 cut(s) 540, 546
NlaIII CATG 3 cut(s) 311, 322, 328
NmuCI GTSAC 2 cut(s) 359, 505
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 307
PfeI GAWTC 2 cut(s) 290, 346
PkrI GCNGC 4 cut(s) 177, 279, 517, 573
PleI GAGTC 2 cut(s) 337, 577
PpsI GAGTC 2 cut(s) 337, 577
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 4 cut(s) 176, 278, 516, 572
Sau3AI GATC 2 cut(s) 540, 546
SchI GAGTC 2 cut(s) 338, 577
ScrFI CCNGG 1 cut(s) 207
SfaNI GCATC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 3 cut(s) 490, 520, 562
SsiI CCGC 3 cut(s) 175, 278, 459
SspMI CTAG 2 cut(s) 21, 314
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 2 cut(s) 78, 473
TaqI TCGA 3 cut(s) 163, 543, 549
TasI AATT 3 cut(s) 490, 520, 562
TauI GCSGC 2 cut(s) 178, 280
TfiI GAWTC 2 cut(s) 290, 346
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseFI GTSAC 2 cut(s) 359, 505
TseI GCWGC 2 cut(s) 515, 571
Tsp45I GTSAC 2 cut(s) 359, 505
TspDTI ATGAA 5 cut(s) 215, 296, 313, 324, 581
XapI RAATTY 2 cut(s) 490, 562
XspI CTAG 2 cut(s) 21, 314
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.