Rorug06G0102800

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000572
Physical Location & Seq
Forward (+)
13674625 .. 13675347
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0102800.1

Sequence Viewer

Length: 723 bp
ATGCCAGTGAGGGATTGTGTTTCTTGGAACACAATGATTAGTGGGTGTGCCAAGAATGGGAGGATGGAGGAGGCATTGCGGCTTTTCGAGTCTATGCCTGAGAGGAGTGTTGTGTCTTGGAATGCAATGGTTACTGGGTTTTTGCAGAATGGTGATGTTGTGAGTGCAGTTGAGTTTTTCGAGAGAATGCCACAGCGGGATGGAGCTTCTGTTAGTGCACTTGTGTCGGGGCTTACTCAAAACGGCGAGCTGGATGAAGCTGCGAGGATTGTTGTTCAATGTGGGGATAGGGGTGAGGGTGTGGAGGTTATGGTCAGAGAGGAAGGGTTGAAGAAGCTCGTCACATTTTTGATCGAATTCCATTTTGTCATGATAAGGGGAAAGAGGGGCGGTAGGAGGTTTGAGAGAAATGTCATAACATGGAATTCCATGATTATGTGCTATGTGAAACTAGGAAATGTTGTTTCTGCTAGGGAACTTTTTGACCAAATGATAGAACGAGATACCTTTTCTTGGAATACCATGATCAGTGGCTATGTACATATGTCAGATATGGAAGAGGCGTCCAAGCTCTTTCAGGAAATGCCAAATCCTGATACACTGTCATGGAATTCAATGATCTTAGGGTATGCCCAGGTTGGTCGTTTAAAACTGGCTCATGATTTTTTAGATAGGATGCCACAAGAGTCTTGTCTCTTGGAACTCCATGATAGCAGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

240

Amino Acids

27.34

Weight (kDa)

5.25

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 4 - 32 4.7e-09 PPR repeat
PPR_2 PF13041 5 - 37 1e-09 PPR repeat family
PPR PF01535 7 - 36 1.5e-11 PPR repeat
PPR_2 PF13041 36 - 66 7.9e-06 PPR repeat family
PPR PF01535 38 - 66 2.8e-06 PPR repeat
PPR_1 PF12854 134 - 164 2.9e-06 PPR repeat
PPR_2 PF13041 136 - 167 1e-06 PPR repeat family
PPR PF01535 139 - 167 8e-09 PPR repeat
PPR_2 PF13041 168 - 196 1.3e-07 PPR repeat family
PPR PF01535 170 - 195 4.1e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 79, 196, 390
AcsI RAATTY 3 cut(s) 356, 424, 610
AcyI GRCGYC 1 cut(s) 563
AfaI GTAC 1 cut(s) 540
AfiI CCNNNNNNNGG 2 cut(s) 57, 513
AgsI TTSAA 3 cut(s) 278, 331, 615
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 5 cut(s) 206, 250, 260, 337, 571
AluI AGCT 5 cut(s) 206, 250, 260, 337, 571
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 698
Alw44I GTGCAC 1 cut(s) 216
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 3 cut(s) 356, 424, 610
AsuHPI GGTGA 2 cut(s) 164, 305
BaeGI GKGCMC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 58, 194
BceAI ACGGC 1 cut(s) 259
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 1 cut(s) 635
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 2 cut(s) 452, 471
BisI GCNGC 2 cut(s) 80, 261
BlsI GCNGC 2 cut(s) 81, 262
Bme1390I CCNGG 1 cut(s) 635
BmrFI CCNGG 1 cut(s) 635
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 666
BmuI ACTGGG 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 1 cut(s) 633
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 513
Bse1I ACTGG 3 cut(s) 5, 139, 657
Bse3DI GCAATG 2 cut(s) 74, 132
BseBI CCWGG 1 cut(s) 635
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 4 cut(s) 69, 205, 259, 681
BseLI CCNNNNNNNGG 2 cut(s) 57, 513
BseMI GCAATG 2 cut(s) 74, 132
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 3 cut(s) 5, 139, 657
BseRI GAGGAG 2 cut(s) 83, 118
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 57, 513
BsmAI GTCTC 1 cut(s) 698
BsmI GAATGC 2 cut(s) 127, 192
Bsp1286I GDGCHC 1 cut(s) 220
Bsp1407I TGTACA 1 cut(s) 538
Bsp143I GATC 3 cut(s) 351, 525, 618
BspACI CCGC 3 cut(s) 79, 196, 390
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 2 cut(s) 369, 658
BsrDI GCAATG 2 cut(s) 74, 132
BsrGI TGTACA 1 cut(s) 538
BsrI ACTGG 3 cut(s) 5, 139, 657
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 3 cut(s) 351, 525, 618
BssNI GRCGYC 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 1 cut(s) 603
Bst6I CTCTTC 1 cut(s) 552
BstACI GRCGYC 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 99, 622
BstF5I GGATG 4 cut(s) 69, 205, 259, 681
BstKTI GATC 3 cut(s) 354, 528, 621
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 3 cut(s) 351, 525, 618
BstNI CCWGG 1 cut(s) 635
BstSCI CCNGG 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 247
BtsCI GGATG 4 cut(s) 69, 205, 259, 681
BtsIMutI CAGTG 3 cut(s) 12, 535, 599
Cac8I GCNNGC 1 cut(s) 248
CciI TCATGA 2 cut(s) 369, 658
CseI GACGC 1 cut(s) 552
Csp6I GTAC 1 cut(s) 539
CviAII CATG 7 cut(s) 370, 420, 430, 523, 606, 659, 707
CviJI RGCY 9 cut(s) 82, 206, 232, 250, 260, 337, 534, 571, 656
CviKI_1 RGCY 9 cut(s) 82, 206, 232, 250, 260, 337, 534, 571, 656
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 2 cut(s) 99, 622
DpnI GATC 3 cut(s) 353, 527, 620
DpnII GATC 3 cut(s) 351, 525, 618
DraI TTTAAA 1 cut(s) 648
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
EcoRI GAATTC 3 cut(s) 356, 424, 610
EcoRII CCWGG 1 cut(s) 633
FaeI CATG 7 cut(s) 373, 423, 433, 526, 609, 662, 710
FatI CATG 7 cut(s) 369, 419, 429, 522, 605, 658, 706
FauI CCCGC 1 cut(s) 189
FauNDI CATATG 1 cut(s) 543
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 80, 261
FokI GGATG 4 cut(s) 76, 212, 266, 688
Fsp4HI GCNGC 2 cut(s) 80, 261
FspBI CTAG 2 cut(s) 452, 471
GluI GCNGC 2 cut(s) 80, 261
HgaI GACGC 1 cut(s) 552
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 7 cut(s) 373, 423, 433, 526, 609, 662, 710
HinfI GANTC 2 cut(s) 89, 686
HphI GGTGA 2 cut(s) 164, 305
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 317, 550
Hpy188III TCNNGA 5 cut(s) 181, 370, 578, 593, 659
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 603
HpyCH4V TGCA 4 cut(s) 125, 145, 167, 218
HpyF3I CTNAG 2 cut(s) 99, 622
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 7 cut(s) 373, 423, 433, 526, 609, 662, 710
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 3 cut(s) 351, 525, 618
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 666
MaeI CTAG 2 cut(s) 452, 471
MaeIII GTNAC 2 cut(s) 130, 340
MalI GATC 3 cut(s) 353, 527, 620
MboI GATC 3 cut(s) 351, 525, 618
MboII GAAGA 2 cut(s) 343, 569
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 3 cut(s) 356, 424, 610
MlyI GAGTC 2 cut(s) 98, 695
MseI TTAA 1 cut(s) 647
MslI CAYNNNNRTG 2 cut(s) 434, 604
MspA1I CMGCKG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 635
Mva1269I GAATGC 2 cut(s) 127, 192
MvaI CCWGG 1 cut(s) 635
NdeI CATATG 1 cut(s) 543
NdeII GATC 3 cut(s) 351, 525, 618
NlaIII CATG 7 cut(s) 373, 423, 433, 526, 609, 662, 710
NmuCI GTSAC 1 cut(s) 340
PagI TCATGA 2 cut(s) 369, 658
PctI GAATGC 2 cut(s) 127, 192
PkrI GCNGC 2 cut(s) 81, 262
PleI GAGTC 2 cut(s) 97, 694
PpsI GAGTC 2 cut(s) 97, 694
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
RseI CAYNNNNRTG 2 cut(s) 434, 604
SaqAI TTAA 1 cut(s) 647
SatI GCNGC 2 cut(s) 80, 261
Sau3AI GATC 3 cut(s) 351, 525, 618
SchI GAGTC 2 cut(s) 98, 695
ScrFI CCNGG 1 cut(s) 635
SduI GDGCHC 1 cut(s) 220
SetI ASST 9 cut(s) 208, 252, 262, 309, 339, 401, 509, 573, 639
SfaNI GCATC 1 cut(s) 666
SmiMI CAYNNNNRTG 2 cut(s) 434, 604
Sse9I AATT 3 cut(s) 356, 424, 610
SsiI CCGC 3 cut(s) 79, 196, 390
SspMI CTAG 2 cut(s) 452, 471
StyD4I CCNGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 603
TaqI TCGA 3 cut(s) 87, 180, 354
TasI AATT 3 cut(s) 356, 424, 610
TatI WGTACW 1 cut(s) 538
TauI GCSGC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 647
Tru9I TTAA 1 cut(s) 647
TscAI CASTG 3 cut(s) 12, 535, 606
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 3 cut(s) 12, 535, 606
VneI GTGCAC 1 cut(s) 216
XapI RAATTY 3 cut(s) 356, 424, 610
XspI CTAG 2 cut(s) 452, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.