RLG00000013380

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000572
Physical Location & Seq
Reverse (-)
30582974 .. 30583682
709 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013380

Sequence Viewer

Length: 456 bp
ATGAAGGTCACTATTAGGCATCTTAGACCTTCTATGATTCAACAGATCTACCATGCTAGCAATAAATATAAGGGTACTGGAGAGGCCATTAGTGACAAGGATTGTTGTGGACAGTGCAAGGGAGAGAAAGTTGTTCAAGAAAAGAAAGTTTTAGAAGTCCATATGGAGAAGGATATGCAGAATGGACAGAAGATCGCATTTCATGGTGAAGTTGATGAAGCTCTACAGCAGCTACTTATCAAATCCGACCATGGTGAAGTTGTGAAGCCTGATTCGTCTAAGGCCATCAATGATGAGGTGGACTTCCCTGAAACTCTGAGCCTCGAACAGGTCAAGGCTTTGGAAGCTGCTCTTCCATCAAGCGCATCATCTCAGCAGCTGACAAGATATGGAGCGTATGAGGAGGACGACGACATGCCTGGTGGTGCACATAGGGTGCAATGTGCACAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

152

Amino Acids

16.77

Weight (kDa)

5.34

Isoelectric Point (pI)

26.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 2 cut(s) 41, 137
AjnI CCWGG 1 cut(s) 418
AleI CACNNNNGTG 1 cut(s) 451
AluBI AGCT 4 cut(s) 221, 232, 347, 379
AluI AGCT 4 cut(s) 221, 232, 347, 379
Alw21I GWGCWC 2 cut(s) 430, 448
Alw44I GTGCAC 2 cut(s) 426, 444
AlwNI CAGNNNCTG 1 cut(s) 379
AoxI GGCC 2 cut(s) 84, 282
ApaLI GTGCAC 2 cut(s) 426, 444
ApeKI GCWGC 3 cut(s) 229, 347, 376
AspLEI GCGC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 218, 266
AsuNHI GCTAGC 1 cut(s) 56
BaeGI GKGCMC 2 cut(s) 430, 448
Bbv12I GWGCWC 2 cut(s) 430, 448
BbvI GCAGC 3 cut(s) 241, 334, 388
BccI CCATC 2 cut(s) 293, 364
BciT130I CCWGG 1 cut(s) 420
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 224
BglII AGATCT 1 cut(s) 45
BisI GCNGC 3 cut(s) 230, 348, 377
BlsI GCNGC 3 cut(s) 231, 349, 378
Bme1390I CCNGG 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 2 cut(s) 28, 374
BmtI GCTAGC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 2 cut(s) 308, 386
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 2 cut(s) 430, 448
BseXI GCAGC 3 cut(s) 241, 334, 388
BshFI GGCC 2 cut(s) 86, 284
BsiHKAI GWGCWC 2 cut(s) 430, 448
BslI CCNNNNNNNGG 1 cut(s) 328
BsnI GGCC 2 cut(s) 86, 284
Bsp1286I GDGCHC 2 cut(s) 430, 448
Bsp143I GATC 2 cut(s) 45, 192
Bsp19I CCATGG 1 cut(s) 250
BspANI GGCC 2 cut(s) 86, 284
BspCNI CTCAG 2 cut(s) 309, 385
BspOI GCTAGC 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 446
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 45, 192
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 114, 453
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 4 cut(s) 23, 279, 317, 372
BstDSI CCRYGG 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 2 cut(s) 48, 195
BstMBI GATC 2 cut(s) 45, 192
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 224
BstSLI GKGCMC 2 cut(s) 430, 448
BstV1I GCAGC 3 cut(s) 241, 334, 388
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 2 cut(s) 86, 284
BtgI CCRYGG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 75
CviAII CATG 4 cut(s) 53, 203, 251, 415
CviJI RGCY 9 cut(s) 86, 221, 232, 268, 284, 321, 338, 347, 379
CviKI_1 RGCY 9 cut(s) 86, 221, 232, 268, 284, 321, 338, 347, 379
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 4 cut(s) 23, 279, 317, 372
DpnI GATC 2 cut(s) 47, 194
DpnII GATC 2 cut(s) 45, 192
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 56, 206, 254, 418
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 4 cut(s) 52, 202, 250, 414
FauNDI CATATG 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 230, 348, 377
Fsp4HI GCNGC 3 cut(s) 230, 348, 377
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 364
GluI GCNGC 3 cut(s) 230, 348, 377
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 86, 284
HhaI GCGC 1 cut(s) 365
Hin1II CATG 4 cut(s) 56, 206, 254, 418
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HinfI GANTC 2 cut(s) 37, 272
HphI GGTGA 2 cut(s) 218, 266
Hpy166II GTNNAC 4 cut(s) 110, 301, 428, 446
Hpy188I TCNGA 2 cut(s) 247, 318
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 4 cut(s) 110, 301, 428, 446
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 2 cut(s) 39, 163
HpyCH4III ACNGT 2 cut(s) 114, 453
HpyCH4V TGCA 5 cut(s) 117, 178, 428, 439, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 4 cut(s) 23, 279, 317, 372
Hsp92II CATG 4 cut(s) 56, 206, 254, 418
HspAI GCGC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 45, 192
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 392
LpnPI CCDG 6 cut(s) 63, 282, 314, 321, 405, 432
Lsp1109I GCAGC 3 cut(s) 241, 334, 388
LweI GCATC 2 cut(s) 28, 374
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 7, 92
MalI GATC 2 cut(s) 47, 194
MboI GATC 2 cut(s) 45, 192
MboII GAAGA 2 cut(s) 202, 344
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 430, 448
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 5 cut(s) 76, 289, 332, 394, 397
MslI CAYNNNNRTG 1 cut(s) 451
MspA1I CMGCKG 1 cut(s) 379
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 344
NcoI CCATGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 162
NdeII GATC 2 cut(s) 45, 192
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 4 cut(s) 56, 206, 254, 418
NmuCI GTSAC 2 cut(s) 7, 92
NspI RCATGY 1 cut(s) 418
OliI CACNNNNGTG 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 37, 272
PkrI GCNGC 3 cut(s) 231, 349, 378
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 357
SatI GCNGC 3 cut(s) 230, 348, 377
Sau3AI GATC 2 cut(s) 45, 192
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 430, 448
SetI ASST 8 cut(s) 9, 31, 223, 234, 300, 333, 349, 381
SfaNI GCATC 2 cut(s) 28, 374
SfcI CTRYAG 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 451
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 114, 453
TaqI TCGA 1 cut(s) 324
TfiI GAWTC 2 cut(s) 37, 272
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 2 cut(s) 7, 92
TseI GCWGC 3 cut(s) 229, 347, 376
Tsp45I GTSAC 2 cut(s) 7, 92
TspDTI ATGAA 3 cut(s) 17, 191, 231
TspRI CASTG 1 cut(s) 119
VneI GTGCAC 2 cut(s) 426, 444
XagI CCTNNNNNAGG 1 cut(s) 326
XceI RCATGY 1 cut(s) 418
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.