Rorug05G0242000

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000572
Physical Location & Seq
Reverse (-)
25823306 .. 25829482
6177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0242000.1

Sequence Viewer

Length: 3615 bp
ATGGACTCCAGGACTCGCCTTGATCATGTTCTCTTCCAACTCACTCCAACCAGAACAAGATGTGAACTTGTAATGTTTGCTGCTGCTGGTGGAAATGAGAAATTGGCTTCAGGGTTTTTGGAACCATTTCTTACACATTTGAAATGTGCAAAGGATCAGATTTCCAAAGGAGGGTACTCCATTACTCTCCGTCCTTCCGGCTCCGGTGCCTCTTGGTTCACCAAAGCCACTCTCCAGAGGTTTGTGAGATTTGTTAGCACACCAGAAGTTCTTGAGAGATTTGTGACTATTGAGAAAGAGATTTTGCAGATTGAGAATTCGCTTCAATCAAGTGAACTCACCGAGGCAGAAGCTGATGGGAGTAAATCAACAGCCATTAAGCCAAACAGTGAATCCAATGAGACCATTGATGCTGTGCCAGAAGAGAATTCCAAGATTCGTCTTCAACGTGTTCTGGAAACTCGGAAGGTAGTACTCTGCAAAGAGCAAGCAATGGCTTATGCTCGTGCTTTAGTTGCTGGATTTGAACTGGACTATATTGATGATCTTTTATCTTTTGCTGATACTTTTGGAGCTTCGCGATTAAGGGAAGCATGCATAAATTTCATAAATCTATACAAGCAAAAGAACGAAGATAGGTTTTGGATGGAAGAAATAGCAGCAATGCAGGCACTCTCTCAGCCGCAACTGCCATACTTGGCAACATCAGGAATCATTCTTGCTGGAGAAGATAATGAGCCCAGTCAGAATCTTAACCAAAGTATTCTCTCCATTGGGAAGAATGGTTCACTAGATACTTCAGTGTCTGATTCAACTGCAAGTCATGGAAGTCTGGATGCGAACCAAGATGGGAAGGCTCAAGTACCAAACCCATGGCCAAACCATCTTCCGCAGTACATGCAAACTTTTCAAGGTCCTGCATTTCAACAAATGCACCCCTATCAAGGTTACATGTTCCCTGGTATGCAGGTTCCACCTTACTATCCAGGGAATATGAAATGGCCTCCAAATGTGGAAGACTCTGGCTTTATGTTTGATCAGGAATCTGATGGCTGTTGGAAGCATAAATCTCATAGAACTAAAAAGAAACATTCTCATGAAAGAGCACTGGAAACTTCAGAACAAGATGGATCCAACGAAAACACTGGTTCAAGTTATGAAAGTGAATCTGATGATCATTTCCAGAATGGTAAAAGGCACTCTGGAACAGAGCAGCAGCATCGGAAAAAGCATGGGCAGAAGTCCTCAAGAAAGGTTGTTATCCGCAATATCAATTACATAAGCTCTAAGAGGGATGGAGGAAGTGGGTCTGAGGGAAATTCATCTGATGAGGATGGATACATTGATGGGAAATCCATTAAACAGCAGGTAGAGGAAGCTGTTGGTTCATTGGAGAAGAGACATAAATCAAGCTCACGTCGTCACCAAAAACAAGGTGGAAGCAAGTTGCATGGCAGTGTAGATGATTCAAATGGAGAGGAACTTAAAAATGCAGATGCAAATAAACATGAGGGAGAAAAGCAAAATGACAACTGGAGTGCTTTCCAGAATCTTCTCATGAGGGACGAGGATCCAAGTTCTTTCAGTACAGAATCACATAATGTGCGGATTGAGGATGAATATCTTTCAAGTAATAACACTGGTCAAGGACGATCGTTTGAATTTAACCTGGAACATGAGAAAGTAACGAAGCAAAGAGCAGTTTCAAGTGAGTATTTGATGGTGACAGAGAGGGATACAGGAAATGAGAGTAAAACTCACGTCCCATACTTCGAAGGTGGCGATGATGTTGGTCGCATTACCAAAAAAAATGGCGCATACGAGGATTTATTATTTTCACAGAGAAATGAAGAGTCAAGGATCAATTCCCATGATACTCTATCTGATTGCGCAAATGAATTGTACAAAACCAAATGTCCAAAAGAAGGGGATTGGTTTATCAGCAACCAACCAGATAATCAGGTTGCCAGCAATGATCTGAAATTTCTTGATGGTGTTTATGCTTCATCAGCGTTGGCTATGGATAGTGTTCATGCTGAGAAAAAGAGAGAAGTTCTAGTGGATGATTCTTTCATGGTTCAAGACCGATCAACAGTTGATCAATCCGATTCTCAGTTCAGGACCAACTTAAGCTTCGTCCCAGAATACACTGGAGCTACTCAAAATGAATATGGCAAGCCAGAGATTTTAAATGATAAGCCTGCAGCCTCTAGCATGCATGAACCAGATGACCTATACATGGTGCTTGATCGCGGTTCAGCTGTGGACCAGGATGTGGCACCATGGAATCCAGAGATGGACTACGAACTTAATGCTTCATCACTTGAAGCCAGTGAAAAGAATCCCGGCATTGAAACAACTGATTCTATTGGTGATGAGCAGCCTTCTAATAGTAAGGGCAAGAATGCTAAAAACAGTGGAACTCCTGGAGGAAAAGTTCCAACCAAAGAAGCAAGGTCTAAAGTTGCAAATGGATCTTTGGGGAAGAGCAGATATGATATCTTATCCAGAAGTAAGAAACCTTCTTCTGTAAGCAAAAGCACAGACCACAAAAGCAAATTTGAAAAGGATGAAGAACAAAGAAAGAGAATGGAAGAGTTAGTAATTGAACGCCAGAAGAGAATTGCTGAGAGGAGTGCTGCTCGTGGTTCTAATACTGCCACATCTAAGAAGGCCCCAGCAGAAATTAAAAATGCCAAAACCACCATGACTAAGACAAAGAATGATAAGCTTAAAGTTCAGTCCCCAACCCAAGAGACCAAGAAAGCAGAGAAGCCTGTCATGCGGAGTTCCACCATTGAACGCCTTGCAACTGCAAGGGTAACTGAGAAGTTGCCAACAACTCTGCCGAGTTCTGGCCAACCCAAAAAGCAAACAATCAAGGCAAATGGGGTAGCTGCAGCTGCCTCATCACAGAAGGCAGCTGGTGCTGAGAACAAGAAAGCAAGTCCAAGCAAAACCAAACCATCAATAGCGAAAGACGGCCTGAAGAATTCAAGTAAGTCATCCAACTCTGATGTCCAGGAAAAAGTGTGCATTGAAGCCACAGAAGCACTGCCAGTTGAGCCGACACCTAAGGCTGTATCTGCAACTCAACCTACTAATGCCATCATTGAGTTGGAAGAGACTAAGCAACTCCATAGTACATCTTCCATTGAAAAGAATGAGGGAAACTTGGTGTTGCAAAGAGAGGCATTAGATAAAGGAAGCTGCAATGAGCATTCACCTGCACCTATTGAAGAGAATTCTGCACAGCCTGATCAGTTAACAGCTGATGCTGAAGAATTACCTCAGGAATCTCCAGTTCTTAGTGAAGACAAAAGAAACTTCATTATTGAAGAGAGTGTAGAACCTCATATTCTGGAATCACCTACCAAACCTTCGATTGTTTCAGCTGTGAACATTGATGAAAATGGTGATATAACCAAAGGTTTTCATGTCTCTACTGAAATTTCTGAGATAGAAATTTCTACTCCACCATATAACGAAACAGCCTCAGAACAACTCCACTCCAGGAAGAAATGGAATGGTGATGAAAACTCTCCTAAAGCTGCCAAAGGGTTTAGGAAACTTCTGTTGTTTGGACGAAAGAGCAAGAACACTCCCGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

1204

Amino Acids

133.33

Weight (kDa)

5.75

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3235
Acc16I TGCGCA 1 cut(s) 1891
Acc36I ACCTGC 3 cut(s) 958, 1357, 3235
AccB1I GGYRCC 2 cut(s) 206, 2278
AccB7I CCANNNNNTGG 1 cut(s) 2275
AccII CGCG 2 cut(s) 580, 2253
AciI CCGC 6 cut(s) 683, 890, 1264, 1606, 2253, 2785
AclWI GGATC 7 cut(s) 162, 1125, 1138, 1565, 1578, 1868, 2482
AcoI YGGCCR 2 cut(s) 875, 2857
AcuI CTGAAG 5 cut(s) 93, 783, 1101, 3008, 3300
AfaI GTAC 7 cut(s) 176, 474, 864, 896, 1588, 1904, 3145
AfiI CCNNNNNNNGG 6 cut(s) 171, 944, 1925, 2239, 2275, 2855
AflII CTTAAG 1 cut(s) 2128
AflIII ACRYGT 2 cut(s) 448, 951
AjiI CACGTC 2 cut(s) 1418, 1762
AjnI CCWGG 8 cut(s) 8, 958, 985, 1668, 2268, 2425, 3021, 3512
AjuI GAANNNNNNNTTGG 2 cut(s) 2117, 2149
AloI GAACNNNNNNTCC 4 cut(s) 769, 801, 2421, 2453
Alw21I GWGCWC 1 cut(s) 1108
Alw26I GTCTC 5 cut(s) 395, 1393, 2750, 3119, 3445
AlwI GGATC 7 cut(s) 162, 1125, 1138, 1565, 1578, 1868, 2482
AlwNI CAGNNNCTG 2 cut(s) 353, 806
AoxI GGCC 5 cut(s) 875, 1001, 2673, 2857, 2983
Asp700I GAANNNNTTC 1 cut(s) 126
AspLEI GCGC 2 cut(s) 1817, 1892
AspS9I GGNCC 4 cut(s) 914, 2121, 2266, 2674
AsuC2I CCSGG 1 cut(s) 2346
AsuHPI GGTGA 9 cut(s) 211, 331, 1415, 1735, 2384, 3216, 3360, 3428, 3542
AsuII TTCGAA 1 cut(s) 1773
AvaII GGWCC 3 cut(s) 914, 2121, 2266
AxyI CCTNAGG 2 cut(s) 3075, 3291
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BalI TGGCCA 2 cut(s) 877, 2859
BamHI GGATCC 2 cut(s) 1130, 1570
BanI GGYRCC 2 cut(s) 206, 2278
BanII GRGCYC 1 cut(s) 741
BarI GAAGNNNNNNTAC 2 cut(s) 2506, 2538
BauI CACGAG 2 cut(s) 504, 2643
BbsI GAAGAC 3 cut(s) 434, 1023, 3321
Bbv12I GWGCWC 1 cut(s) 1108
BceAI ACGGC 1 cut(s) 2998
BcgI CGANNNNNNTGC 4 cut(s) 1202, 1236, 2294, 2328
BciT130I CCWGG 8 cut(s) 10, 960, 987, 1670, 2270, 2427, 3023, 3514
BciVI GTATCC 2 cut(s) 1331, 1729
BclI TGATCA 5 cut(s) 22, 1036, 1174, 2098, 3259
BcnI CCSGG 1 cut(s) 2346
BcoDI GTCTC 5 cut(s) 395, 1393, 2750, 3119, 3445
BfaI CTAG 3 cut(s) 791, 2057, 2211
BfmI CTRYAG 2 cut(s) 2202, 2898
BfrI CTTAAG 1 cut(s) 2128
BfuAI ACCTGC 3 cut(s) 958, 1357, 3235
BfuI GTATCC 2 cut(s) 1331, 1729
BmcAI AGTACT 1 cut(s) 474
Bme1390I CCNGG 9 cut(s) 10, 960, 987, 1670, 2270, 2346, 2427, 3023, 3514
Bme18I GGWCC 3 cut(s) 914, 2121, 2266
BmgBI CACGTC 2 cut(s) 1418, 1762
BmgT120I GGNCC 4 cut(s) 914, 2121, 2266, 2674
BmiI GGNNCC 8 cut(s) 123, 202, 208, 972, 1132, 1572, 2280, 2676
BmrFI CCNGG 9 cut(s) 10, 960, 987, 1670, 2270, 2346, 2427, 3023, 3514
BmrI ACTGGG 1 cut(s) 735
BmsI GCATC 5 cut(s) 400, 826, 1228, 1486, 3265
BmuI ACTGGG 1 cut(s) 735
BpiI GAAGAC 3 cut(s) 434, 1023, 3321
BplI GAGNNNNNCTC 4 cut(s) 1741, 1773, 2626, 2658
BpmI CTGGAG 7 cut(s) 218, 744, 1555, 2172, 2448, 3285, 3496
Bpu14I TTCGAA 1 cut(s) 1773
BpuEI CTTGAG 3 cut(s) 293, 843, 1231
BpuMI CCSGG 1 cut(s) 2346
BsaBI GATNNNNATC 1 cut(s) 1620
BsaI GGTCTC 2 cut(s) 395, 2750
BsaJI CCNNGG 5 cut(s) 342, 872, 958, 986, 2282
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 2421, 2451
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 944, 1925, 2239, 2275, 2855
Bse21I CCTNAGG 2 cut(s) 3075, 3291
Bse3DI GCAATG 4 cut(s) 498, 669, 1978, 3220
Bse8I GATNNNNATC 1 cut(s) 1620
BseBI CCWGG 8 cut(s) 10, 960, 987, 1670, 2270, 2427, 3023, 3514
BseDI CCNNGG 5 cut(s) 342, 872, 958, 986, 2282
BseGI GGATG 9 cut(s) 651, 841, 1300, 1339, 1621, 2068, 2278, 2575, 3005
BseJI GATNNNNATC 1 cut(s) 1620
BseLI CCNNNNNNNGG 6 cut(s) 171, 944, 1925, 2239, 2275, 2855
BseMI GCAATG 4 cut(s) 498, 669, 1978, 3220
BseRI GAGGAG 1 cut(s) 2647
BseYI CCCAGC 1 cut(s) 2677
BsgI GTGCAG 2 cut(s) 3213, 3234
Bsh1236I CGCG 2 cut(s) 580, 2253
Bsh1285I CGRYCG 1 cut(s) 1655
BshFI GGCC 5 cut(s) 877, 1003, 2675, 2859, 2985
BshNI GGYRCC 2 cut(s) 206, 2278
BsiEI CGRYCG 1 cut(s) 1655
BsiHKAI GWGCWC 1 cut(s) 1108
BsiSI CCGG 3 cut(s) 198, 204, 2346
BslFI GGGAC 4 cut(s) 1577, 1748, 2123, 2728
BslI CCNNNNNNNGG 6 cut(s) 171, 944, 1925, 2239, 2275, 2855
BsmAI GTCTC 5 cut(s) 395, 1393, 2750, 3119, 3445
BsmFI GGGAC 4 cut(s) 1577, 1748, 2123, 2728
BsmI GAATGC 2 cut(s) 2410, 3220
BsnI GGCC 5 cut(s) 877, 1003, 2675, 2859, 2985
Bso31I GGTCTC 2 cut(s) 395, 2750
Bsp119I TTCGAA 1 cut(s) 1773
Bsp1286I GDGCHC 2 cut(s) 741, 1108
Bsp1407I TGTACA 1 cut(s) 1902
Bsp19I CCATGG 2 cut(s) 872, 2282
Bsp68I TCGCGA 1 cut(s) 580
BspACI CCGC 6 cut(s) 683, 890, 1264, 1606, 2253, 2785
BspANI GGCC 5 cut(s) 877, 1003, 2675, 2859, 2985
BspFNI CGCG 2 cut(s) 580, 2253
BspHI TCATGA 2 cut(s) 1096, 1557
BspLI GGNNCC 8 cut(s) 123, 202, 208, 972, 1132, 1572, 2280, 2676
BspMAI CTGCAG 2 cut(s) 2206, 2902
BspMI ACCTGC 3 cut(s) 958, 1357, 3235
BspPI GGATC 7 cut(s) 162, 1125, 1138, 1565, 1578, 1868, 2482
BspQI GCTCTTC 1 cut(s) 2480
BspT104I TTCGAA 1 cut(s) 1773
BspT107I GGYRCC 2 cut(s) 206, 2278
BspTI CTTAAG 1 cut(s) 2128
BspTNI GGTCTC 2 cut(s) 395, 2750
BsrDI GCAATG 4 cut(s) 498, 669, 1978, 3220
BsrGI TGTACA 1 cut(s) 1902
BssECI CCNNGG 5 cut(s) 342, 872, 958, 986, 2282
BssSI CACGAG 2 cut(s) 504, 2643
BssT1I CCWWGG 2 cut(s) 872, 2282
Bst2BI CACGAG 2 cut(s) 504, 2643
Bst2UI CCWGG 8 cut(s) 10, 960, 987, 1670, 2270, 2427, 3023, 3514
Bst4CI ACNGT 3 cut(s) 389, 2095, 2417
BstAFI CTTAAG 1 cut(s) 2128
BstAPI GCANNNNNTGC 2 cut(s) 898, 2927
BstAUI TGTACA 1 cut(s) 1902
BstBI TTCGAA 1 cut(s) 1773
BstC8I GCNNGC 7 cut(s) 489, 595, 669, 1969, 2177, 2202, 2216
BstDSI CCRYGG 2 cut(s) 872, 2282
BstF5I GGATG 9 cut(s) 651, 841, 1300, 1339, 1621, 2068, 2278, 2575, 3005
BstFNI CGCG 2 cut(s) 580, 2253
BstHHI GCGC 2 cut(s) 1817, 1892
BstMAI GTCTC 5 cut(s) 395, 1393, 2750, 3119, 3445
BstMCI CGRYCG 1 cut(s) 1655
BstNI CCWGG 8 cut(s) 10, 960, 987, 1670, 2270, 2427, 3023, 3514
BstNSI RCATGY 4 cut(s) 597, 901, 955, 2218
BstSCI CCNGG 9 cut(s) 8, 958, 985, 1668, 2268, 2344, 2425, 3021, 3512
BstSFI CTRYAG 2 cut(s) 2202, 2898
BstUI CGCG 2 cut(s) 580, 2253
BstV2I GAAGAC 3 cut(s) 434, 1023, 3321
BstX2I RGATCY 3 cut(s) 1130, 1570, 2474
BstXI CCANNNNNNTGG 1 cut(s) 873
BstYI RGATCY 3 cut(s) 1130, 1570, 2474
Bsu36I CCTNAGG 2 cut(s) 3075, 3291
BsuI GTATCC 2 cut(s) 1331, 1729
BsuRI GGCC 5 cut(s) 877, 1003, 2675, 2859, 2985
BtgI CCRYGG 2 cut(s) 872, 2282
BtgZI GCGATG 1 cut(s) 1797
BtrI CACGTC 2 cut(s) 1418, 1762
BtsCI GGATG 9 cut(s) 651, 841, 1300, 1339, 1621, 2068, 2278, 2575, 3005
BtsI GCAGTG 2 cut(s) 1462, 3053
BtuMI TCGCGA 1 cut(s) 580
BveI ACCTGC 3 cut(s) 958, 1357, 3235
Cac8I GCNNGC 7 cut(s) 489, 595, 669, 1969, 2177, 2202, 2216
CaiI CAGNNNCTG 2 cut(s) 353, 806
CciI TCATGA 2 cut(s) 1096, 1557
CfoI GCGC 2 cut(s) 1817, 1892
Cfr13I GGNCC 4 cut(s) 914, 2121, 2266, 2674
Csp6I GTAC 7 cut(s) 175, 473, 863, 895, 1587, 1903, 3144
CviQI GTAC 7 cut(s) 175, 473, 863, 895, 1587, 1903, 3144
DraI TTTAAA 1 cut(s) 2190
EaeI YGGCCR 2 cut(s) 875, 2857
Eco130I CCWWGG 2 cut(s) 872, 2282
Eco24I GRGCYC 1 cut(s) 741
Eco31I GGTCTC 2 cut(s) 395, 2750
Eco32I GATATC 1 cut(s) 2500
Eco47I GGWCC 3 cut(s) 914, 2121, 2266
Eco57I CTGAAG 5 cut(s) 93, 783, 1101, 3008, 3300
Eco81I CCTNAGG 2 cut(s) 3075, 3291
EcoO109I RGGNCCY 2 cut(s) 914, 2674
EcoRI GAATTC 4 cut(s) 316, 427, 2992, 3244
EcoRII CCWGG 8 cut(s) 8, 958, 985, 1668, 2268, 2425, 3021, 3512
EcoRV GATATC 1 cut(s) 2500
EcoT14I CCWWGG 2 cut(s) 872, 2282
EcoT22I ATGCAT 2 cut(s) 599, 2220
EcoT38I GRGCYC 1 cut(s) 741
ErhI CCWWGG 2 cut(s) 872, 2282
FaqI GGGAC 4 cut(s) 1577, 1748, 2123, 2728
FbaI TGATCA 5 cut(s) 22, 1036, 1174, 2098, 3259
FokI GGATG 9 cut(s) 658, 848, 1307, 1346, 1628, 2075, 2285, 2582, 2992
FriOI GRGCYC 1 cut(s) 741
FspBI CTAG 3 cut(s) 791, 2057, 2211
FspI TGCGCA 1 cut(s) 1891
GlaI GCGC 2 cut(s) 1816, 1891
GsaI CCCAGC 1 cut(s) 2681
GsuI CTGGAG 7 cut(s) 218, 744, 1555, 2172, 2448, 3285, 3496
HaeIII GGCC 5 cut(s) 877, 1003, 2675, 2859, 2985
HapII CCGG 3 cut(s) 198, 204, 2346
HhaI GCGC 2 cut(s) 1817, 1892
Hin6I GCGC 2 cut(s) 1815, 1890
HinP1I GCGC 2 cut(s) 1815, 1890
HincII GTYRAC 1 cut(s) 3267
HindII GTYRAC 1 cut(s) 3267
HindIII AAGCTT 2 cut(s) 2131, 2729
HpaI GTTAAC 1 cut(s) 3267
HpaII CCGG 3 cut(s) 198, 204, 2346
HphI GGTGA 9 cut(s) 211, 331, 1415, 1735, 2384, 3216, 3360, 3428, 3542
Hpy166II GTNNAC 7 cut(s) 65, 219, 335, 788, 2266, 3267, 3400
Hpy8I GTNNAC 7 cut(s) 65, 219, 335, 788, 2266, 3267, 3400
Hpy99I CGWCG 1 cut(s) 1422
HpyCH4III ACNGT 3 cut(s) 389, 2095, 2417
HpyCH4IV ACGT 3 cut(s) 448, 1417, 1761
HpySE526I ACGT 3 cut(s) 448, 1417, 1761
HspAI GCGC 2 cut(s) 1815, 1890
Ksp22I TGATCA 5 cut(s) 22, 1036, 1174, 2098, 3259
KspAI GTTAAC 1 cut(s) 3267
LguI GCTCTTC 1 cut(s) 2480
LmnI GCTCC 3 cut(s) 206, 572, 2153
LweI GCATC 5 cut(s) 400, 826, 1228, 1486, 3265
MaeI CTAG 3 cut(s) 791, 2057, 2211
MaeII ACGT 3 cut(s) 448, 1417, 1761
MaeIII GTNAC 6 cut(s) 283, 947, 1421, 1684, 1723, 2821
MfeI CAATTG 1 cut(s) 3610
MflI RGATCY 3 cut(s) 1130, 1570, 2474
MhlI GDGCHC 2 cut(s) 741, 1108
MlsI TGGCCA 2 cut(s) 877, 2859
MluNI TGGCCA 2 cut(s) 877, 2859
MlyI GAGTC 3 cut(s) 7, 1013, 1862
MmeI TCCRAC 7 cut(s) 61, 71, 1037, 1158, 2465, 3033, 3099
Mox20I TGGCCA 2 cut(s) 877, 2859
Mph1103I ATGCAT 2 cut(s) 599, 2220
MroXI GAANNNNTTC 1 cut(s) 126
MscI TGGCCA 2 cut(s) 877, 2859
MslI CAYNNNNRTG 2 cut(s) 1095, 1455
Msp20I TGGCCA 2 cut(s) 877, 2859
MspA1I CMGCKG 5 cut(s) 2261, 2903, 2924, 3272, 3395
MspCI CTTAAG 1 cut(s) 2128
MspI CCGG 3 cut(s) 198, 204, 2346
MspR9I CCNGG 9 cut(s) 10, 960, 987, 1670, 2270, 2346, 2427, 3023, 3514
MunI CAATTG 1 cut(s) 3610
Mva1269I GAATGC 2 cut(s) 2410, 3220
MvaI CCWGG 8 cut(s) 10, 960, 987, 1670, 2270, 2427, 3023, 3514
MvnI CGCG 2 cut(s) 580, 2253
NciI CCSGG 1 cut(s) 2346
NcoI CCATGG 2 cut(s) 872, 2282
NlaIV GGNNCC 8 cut(s) 123, 202, 208, 972, 1132, 1572, 2280, 2676
NmeAIII GCCGAG 1 cut(s) 2874
NmuCI GTSAC 3 cut(s) 283, 1421, 1723
NruI TCGCGA 1 cut(s) 580
NsbI TGCGCA 1 cut(s) 1891
NsiI ATGCAT 2 cut(s) 599, 2220
NspI RCATGY 4 cut(s) 597, 901, 955, 2218
NspV TTCGAA 1 cut(s) 1773
PaeI GCATGC 2 cut(s) 597, 2218
PagI TCATGA 2 cut(s) 1096, 1557
PaqCI CACCTGC 1 cut(s) 3235
PciI ACATGT 1 cut(s) 951
PciSI GCTCTTC 1 cut(s) 2480
PcsI WCGNNNNNNNCGW 2 cut(s) 445, 1779
PctI GAATGC 2 cut(s) 2410, 3220
PdmI GAANNNNTTC 1 cut(s) 126
PflMI CCANNNNNTGG 1 cut(s) 2275
PfoI TCCNGGA 4 cut(s) 8, 2425, 3021, 3512
Ple19I CGATCG 1 cut(s) 1655
PleI GAGTC 3 cut(s) 7, 1013, 1861
PpsI GAGTC 3 cut(s) 7, 1013, 1861
PpuMI RGGWCCY 1 cut(s) 914
PscI ACATGT 1 cut(s) 951
Psp5II RGGWCCY 1 cut(s) 914
Psp6I CCWGG 8 cut(s) 8, 958, 985, 1668, 2268, 2425, 3021, 3512
PspFI CCCAGC 1 cut(s) 2677
PspGI CCWGG 8 cut(s) 8, 958, 985, 1668, 2268, 2425, 3021, 3512
PspN4I GGNNCC 8 cut(s) 123, 202, 208, 972, 1132, 1572, 2280, 2676
PspPI GGNCC 4 cut(s) 914, 2121, 2266, 2674
PspPPI RGGWCCY 1 cut(s) 914
PstI CTGCAG 2 cut(s) 2206, 2902
PstNI CAGNNNCTG 2 cut(s) 353, 806
PsuI RGATCY 3 cut(s) 1130, 1570, 2474
PvuI CGATCG 1 cut(s) 1655
PvuII CAGCTG 5 cut(s) 2261, 2903, 2924, 3272, 3395
RruI TCGCGA 1 cut(s) 580
RsaI GTAC 7 cut(s) 176, 474, 864, 896, 1588, 1904, 3145
RsaNI GTAC 7 cut(s) 175, 473, 863, 895, 1587, 1903, 3144
RseI CAYNNNNRTG 2 cut(s) 1095, 1455
SapI GCTCTTC 1 cut(s) 2480
Sau96I GGNCC 4 cut(s) 914, 2121, 2266, 2674
ScaI AGTACT 1 cut(s) 474
SchI GAGTC 3 cut(s) 7, 1013, 1862
ScrFI CCNGG 9 cut(s) 10, 960, 987, 1670, 2270, 2346, 2427, 3023, 3514
SduI GDGCHC 2 cut(s) 741, 1108
SfaNI GCATC 5 cut(s) 400, 826, 1228, 1486, 3265
SfcI CTRYAG 2 cut(s) 2202, 2898
SfuI TTCGAA 1 cut(s) 1773
SinI GGWCC 3 cut(s) 914, 2121, 2266
SmiMI CAYNNNNRTG 2 cut(s) 1095, 1455
SmlI CTYRAG 4 cut(s) 272, 858, 1246, 2128
SmoI CTYRAG 4 cut(s) 272, 858, 1246, 2128
SphI GCATGC 2 cut(s) 597, 2218
SsiI CCGC 6 cut(s) 683, 890, 1264, 1606, 2253, 2785
SspMI CTAG 3 cut(s) 791, 2057, 2211
StyD4I CCNGG 9 cut(s) 8, 958, 985, 1668, 2268, 2344, 2425, 3021, 3512
StyI CCWWGG 2 cut(s) 872, 2282
TaaI ACNGT 3 cut(s) 389, 2095, 2417
TaiI ACGT 3 cut(s) 451, 1420, 1764
TaqI TCGA 2 cut(s) 1773, 3383
TaqII GACCGA 1 cut(s) 2100
TatI WGTACW 5 cut(s) 472, 894, 1586, 1902, 3143
TauI GCSGC 1 cut(s) 685
TseFI GTSAC 3 cut(s) 283, 1421, 1723
Tsp45I GTSAC 3 cut(s) 283, 1421, 1723
TspGWI ACGGA 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 2275
Vha464I CTTAAG 1 cut(s) 2128
VpaK11BI GGWCC 3 cut(s) 914, 2121, 2266
XceI RCATGY 4 cut(s) 597, 901, 955, 2218
XcmI CCANNNNNNNNNTGG 2 cut(s) 1433, 3115
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 3 cut(s) 791, 2057, 2211
ZrmI AGTACT 1 cut(s) 474
Zsp2I ATGCAT 2 cut(s) 599, 2220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.