Rmu_co8449175.1_g000001

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8449175.1
OG0000572
Physical Location & Seq
Forward (+)
645 .. 1495
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8449175.1_g000001.1.cds

Sequence Viewer

Length: 570 bp
atgttaaagattgattatgtcaactttcatagaagatgtggttcactcattgaaggtctctttagaagacctatatcttggaacctcaaagaaactctccctatctcgcaatgtgttgtgctccaagtgcaaaggcaaggggtcaaaatttggagccttgaccaactgtggtggttacgtttccaaggaactggtatggaggtcactattaggcatcttagaccttctatgattcaacagatttaccatgctagcaataaatataagggtactggagagaccatcagtgacaaggattgctgtggacagtgcaagggagagaaagttgttcaagaaaagaaagttttagaagtccatatggagaaggatatgcagaatggacagaagattgcatttcctggtgaagcagctatacttatcaaatccgaccatggtgaagttgtgaagcctgattcgtctaaggccatcaatgatgaggatgagtgtgaggagacgactctgcatgatgtgaacagaggagaagatgaggaggaaattacagcactaggctcattcggaggaggcgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

189

Amino Acids

21.43

Weight (kDa)

5.72

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 147
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 3 cut(s) 53, 236, 332
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 3 cut(s) 62, 272, 485
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 413, 446
AsuNHI GCTAGC 1 cut(s) 251
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 419
BccI CCATC 2 cut(s) 290, 473
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 3 cut(s) 62, 272, 485
BfaI CTAG 2 cut(s) 252, 545
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 1 cut(s) 399
BmiI GGNNCC 2 cut(s) 83, 155
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 294
BsaI GGTCTC 2 cut(s) 62, 272
BsaJI CCNNGG 2 cut(s) 184, 430
BsaXI ACNNNNNCTCC 3 cut(s) 309, 339, 549
Bse1I ACTGG 2 cut(s) 196, 277
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 184, 430
BseGI GGATG 1 cut(s) 484
BseMI GCAATG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 196, 277
BseRI GAGGAG 3 cut(s) 503, 531, 542
BseXI GCAGC 1 cut(s) 419
BshFI GGCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 123
BsmAI GTCTC 3 cut(s) 62, 272, 485
BsmBI CGTCTC 1 cut(s) 485
BsnI GGCC 1 cut(s) 464
Bso31I GGTCTC 2 cut(s) 62, 272
Bsp1286I GDGCHC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 430
BspANI GGCC 1 cut(s) 464
BspLI GGNNCC 2 cut(s) 83, 155
BspOI GCTAGC 1 cut(s) 255
BspTNI GGTCTC 2 cut(s) 62, 272
BsrDI GCAATG 1 cut(s) 116
BsrI ACTGG 2 cut(s) 196, 277
BssECI CCNNGG 2 cut(s) 184, 430
BssT1I CCWWGG 2 cut(s) 184, 430
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 168, 309
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 218, 459
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 1 cut(s) 484
BstMAI GTCTC 3 cut(s) 62, 272, 485
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 464
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 2 cut(s) 292, 314
Cac8I GCNNGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 3 cut(s) 248, 431, 503
CviJI RGCY 5 cut(s) 156, 410, 448, 464, 549
CviKI_1 RGCY 5 cut(s) 156, 410, 448, 464, 549
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 218, 459
Eco130I CCWWGG 2 cut(s) 184, 430
Eco31I GGTCTC 2 cut(s) 62, 272
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 184, 430
ErhI CCWWGG 2 cut(s) 184, 430
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 3 cut(s) 251, 434, 506
FatI CATG 3 cut(s) 247, 430, 502
FauNDI CATATG 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 2 cut(s) 252, 545
GluI GCNGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 464
Hin1II CATG 3 cut(s) 251, 434, 506
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 232, 452, 496
HphI GGTGA 2 cut(s) 413, 446
Hpy166II GTNNAC 4 cut(s) 22, 44, 305, 511
Hpy188I TCNGA 2 cut(s) 427, 557
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 4 cut(s) 22, 44, 305, 511
HpyAV CCTTC 3 cut(s) 47, 234, 358
HpyCH4III ACNGT 2 cut(s) 168, 309
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 5 cut(s) 130, 312, 373, 392, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 218, 459
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 3 cut(s) 251, 434, 506
LmnI GCTCC 2 cut(s) 126, 153
LpnPI CCDG 5 cut(s) 177, 258, 384, 411, 462
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 252, 545
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 3 cut(s) 174, 202, 287
MboII GAAGA 4 cut(s) 45, 78, 397, 533
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 2 cut(s) 147, 534
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 9 cut(s) 95, 193, 469, 481, 509, 520, 523, 551, 554
MseI TTAA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 127
NcoI CCATGG 1 cut(s) 430
NdeI CATATG 1 cut(s) 357
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 3 cut(s) 251, 434, 506
NlaIV GGNNCC 2 cut(s) 83, 155
NmuCI GTSAC 2 cut(s) 202, 287
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PfeI GAWTC 2 cut(s) 232, 452
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 83, 155
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 408
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 58, 73, 87, 181, 204, 226, 412
SfaNI GCATC 1 cut(s) 223
Sse9I AATT 2 cut(s) 147, 534
SspMI CTAG 2 cut(s) 252, 545
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 2 cut(s) 184, 430
TaaI ACNGT 2 cut(s) 168, 309
TaiI ACGT 1 cut(s) 181
TasI AATT 2 cut(s) 147, 534
TfiI GAWTC 2 cut(s) 232, 452
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 2 cut(s) 292, 314
TseFI GTSAC 2 cut(s) 202, 287
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 2 cut(s) 202, 287
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 292, 314
XapI RAATTY 1 cut(s) 147
XspI CTAG 2 cut(s) 252, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.