Rroxscaffold_5G00370640

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000572
Physical Location & Seq
Forward (+)
52336985 .. 52342772
5788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370640.1

Sequence Viewer

Length: 987 bp
ATGAATCTTCTTTCGTTTCTGCGCAAAATACATGATAAGATGTTTGGGGGATATCAAAATGAGAAGAGCGATTACACCACTAAGTCGGAAGGCCGGAGGCAGAGAAGGGGAGAGGATGGGATCTATCACCTCAAGGTTTCTCTTGAAGATCTCTACAGCGGCACAACCAGAAAGCTTGCTGTCACTCGCAACAAGATCTGCACCAAGTGCAAGGGCAAAGGGTCAAAGTCAGGTGCTTCAAGGACGTGCCGTGGTTGCCAAGGGCATGGTTGTAAAGTCACTGTACGCCATTTAAGCCAAAATTTGACGCAGCAAACGCAGTACTACTGCTATGAGTGCAAGGGCACTGGCCAGACCATTCGTACCAAGGACCGCTGCCAGCAGTGCAAGGGTGACAAGGTTGTGCTGGAGAAGAAAATATTGGAAGTCCACGTGGAGATAGGAATGAAAAACGGGCAGAAGATCATATTCCCTGGCGAAGCTCACGAAGGGCCTAATACCATCACAGGTAATATTGTTATTGTTGTCCAACAGAAGGAGCATCCCAAGTTTAAGCGAGAGGGGGATAACCTAATATTTAAGCATAAATTGTCCCTAAAGGAGGCACTCTGTGGGTTCCAATTTAGGTTGACACATTTGGATGGTAGGCAGCTTCTGATTAAGTCTCAACCTGGAGAAGTTGTCAACCCTAATCAGTGCAAAGCTATACATGATGAAGGCATGCCAATCTACTCGAATCCATTTATTAAGGGCAAGTTGTATGTCCAGTTCACTGTTAAGTACCCAAATTCCTTGAACCCAGAACTGTGCAAGGCACTGGAGGCTTCACCGCTTACTGATACGGAGCTAGACGAATGCGATGACACTACGCTGTATGATGTGAACATGGAGGACGAAATGCAAAAAAAGAAAGCAAATCAGTCTCAAGAGTCATATGAGGAAGATGAGGACATGCATGGTGATGCCGGTCCTTCTCACAGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

328

Amino Acids

37.18

Weight (kDa)

8.65

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 42 - 262 1.9e-35 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 67 - 133 2.9e-11 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
AciI CCGC 3 cut(s) 159, 373, 830
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 2 cut(s) 301, 787
AcvI CACGTG 1 cut(s) 433
AdeI CACNNNGTG 2 cut(s) 207, 611
AfaI GTAC 4 cut(s) 285, 323, 364, 782
AfiI CCNNNNNNNGG 2 cut(s) 535, 601
AgsI TTSAA 3 cut(s) 146, 240, 796
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 2 cut(s) 472, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 5 cut(s) 175, 482, 652, 704, 847
AluI AGCT 5 cut(s) 175, 482, 652, 704, 847
Alw26I GTCTC 2 cut(s) 669, 927
AlwI GGATC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 655
AoxI GGCC 3 cut(s) 91, 349, 491
ApeKI GCWGC 3 cut(s) 310, 375, 649
ApoI RAATTY 2 cut(s) 301, 787
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 370, 491, 968
AsuHPI GGTGA 4 cut(s) 119, 404, 819, 971
AvaII GGWCC 2 cut(s) 370, 968
BaeGI GKGCMC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 351
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbrPI CACGTG 1 cut(s) 433
BbvI GCAGC 3 cut(s) 322, 362, 661
BccI CCATC 3 cut(s) 110, 509, 635
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 2 cut(s) 474, 672
BcoDI GTCTC 2 cut(s) 669, 927
BfaI CTAG 2 cut(s) 848, 985
BfmI CTRYAG 1 cut(s) 154
BglII AGATCT 2 cut(s) 148, 195
BisI GCNGC 4 cut(s) 160, 311, 376, 650
BlsI GCNGC 4 cut(s) 161, 312, 377, 651
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 2 cut(s) 474, 672
Bme18I GGWCC 2 cut(s) 370, 968
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 3 cut(s) 370, 491, 968
BmiI GGNNCC 1 cut(s) 617
BmrFI CCNGG 2 cut(s) 474, 672
BmsI GCATC 2 cut(s) 550, 952
BpmI CTGGAG 3 cut(s) 428, 693, 839
BpuEI CTTGAG 2 cut(s) 116, 909
BsaAI YACGTR 1 cut(s) 433
BsaJI CCNNGG 4 cut(s) 250, 259, 366, 472
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 535, 601
Bse118I RCCGGY 1 cut(s) 965
Bse1I ACTGG 3 cut(s) 352, 766, 822
BseBI CCWGG 2 cut(s) 474, 672
BseDI CCNNGG 4 cut(s) 250, 259, 366, 472
BseGI GGATG 3 cut(s) 121, 541, 646
BseLI CCNNNNNNNGG 2 cut(s) 535, 601
BseNI ACTGG 3 cut(s) 352, 766, 822
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 3 cut(s) 322, 362, 661
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 3 cut(s) 93, 351, 493
BsiSI CCGG 2 cut(s) 94, 966
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 2 cut(s) 535, 601
BsmAI GTCTC 2 cut(s) 669, 927
BsmFI GGGAC 1 cut(s) 577
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 3 cut(s) 93, 351, 493
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 4 cut(s) 120, 148, 195, 462
BspACI CCGC 3 cut(s) 159, 373, 830
BspANI GGCC 3 cut(s) 93, 351, 493
BspLI GGNNCC 1 cut(s) 617
BspPI GGATC 1 cut(s) 128
BspQI GCTCTTC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 965
BsrI ACTGG 3 cut(s) 352, 766, 822
BssAI RCCGGY 1 cut(s) 965
BssECI CCNNGG 4 cut(s) 250, 259, 366, 472
BssMI GATC 4 cut(s) 120, 148, 195, 462
BssT1I CCWWGG 2 cut(s) 259, 366
Bst2UI CCWGG 2 cut(s) 474, 672
Bst4CI ACNGT 4 cut(s) 283, 775, 807, 980
Bst6I CTCTTC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 207
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 177, 380, 722
BstDEI CTNAG 1 cut(s) 81
BstDSI CCRYGG 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 3 cut(s) 121, 541, 646
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 4 cut(s) 123, 151, 198, 465
BstMAI GTCTC 2 cut(s) 669, 927
BstMBI GATC 4 cut(s) 120, 148, 195, 462
BstMWI GCNNNNNNNGC 7 cut(s) 207, 255, 294, 316, 336, 384, 821
BstNI CCWGG 2 cut(s) 474, 672
BstNSI RCATGY 2 cut(s) 724, 955
BstSCI CCNGG 2 cut(s) 472, 670
BstSFI CTRYAG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 322, 362, 661
BstX2I RGATCY 3 cut(s) 120, 148, 195
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 3 cut(s) 120, 148, 195
BsuRI GGCC 3 cut(s) 93, 351, 493
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 873
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 3 cut(s) 121, 541, 646
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 6 cut(s) 279, 345, 389, 701, 771, 815
Cac8I GCNNGC 3 cut(s) 177, 380, 722
CaiI CAGNNNCTG 1 cut(s) 655
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 965
Cfr13I GGNCC 3 cut(s) 370, 491, 968
CseI GACGC 1 cut(s) 316
Csp6I GTAC 4 cut(s) 284, 322, 363, 781
CviAII CATG 7 cut(s) 32, 266, 710, 721, 886, 952, 956
CviQI GTAC 4 cut(s) 284, 322, 363, 781
DdeI CTNAG 1 cut(s) 81
DpnI GATC 4 cut(s) 122, 150, 197, 464
DpnII GATC 4 cut(s) 120, 148, 195, 462
DraIII CACNNNGTG 2 cut(s) 207, 611
EaeI YGGCCR 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 2 cut(s) 259, 366
Eco32I GATATC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 370, 968
Eco72I CACGTG 1 cut(s) 433
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 472, 670
EcoRV GATATC 1 cut(s) 53
EcoT14I CCWWGG 2 cut(s) 259, 366
EcoT22I ATGCAT 1 cut(s) 957
ErhI CCWWGG 2 cut(s) 259, 366
FaeI CATG 7 cut(s) 35, 269, 713, 724, 889, 955, 959
FaqI GGGAC 1 cut(s) 577
FatI CATG 7 cut(s) 31, 265, 709, 720, 885, 951, 955
FauNDI CATATG 1 cut(s) 934
Fnu4HI GCNGC 4 cut(s) 160, 311, 376, 650
FokI GGATG 3 cut(s) 128, 528, 653
Fsp4HI GCNGC 4 cut(s) 160, 311, 376, 650
FspBI CTAG 2 cut(s) 848, 985
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 4 cut(s) 160, 311, 376, 650
GsuI CTGGAG 3 cut(s) 428, 693, 839
HaeIII GGCC 3 cut(s) 93, 351, 493
HapII CCGG 2 cut(s) 94, 966
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 24
Hin1II CATG 7 cut(s) 35, 269, 713, 724, 889, 955, 959
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 2 cut(s) 630, 685
HindII GTYRAC 2 cut(s) 630, 685
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 3 cut(s) 4, 736, 929
HpaII CCGG 2 cut(s) 94, 966
HphI GGTGA 4 cut(s) 119, 404, 819, 971
Hpy166II GTNNAC 5 cut(s) 430, 630, 685, 771, 883
Hpy188I TCNGA 2 cut(s) 88, 657
Hpy188III TCNNGA 3 cut(s) 143, 485, 926
Hpy8I GTNNAC 5 cut(s) 430, 630, 685, 771, 883
HpyAV CCTTC 6 cut(s) 83, 99, 482, 529, 710, 981
HpyCH4III ACNGT 4 cut(s) 283, 775, 807, 980
HpyCH4IV ACGT 2 cut(s) 245, 432
HpyCH4V TGCA 8 cut(s) 201, 210, 339, 387, 699, 810, 901, 955
HpyF10VI GCNNNNNNNGC 7 cut(s) 207, 255, 294, 316, 336, 384, 821
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 2 cut(s) 245, 432
Hsp92II CATG 7 cut(s) 35, 269, 713, 724, 889, 955, 959
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 4 cut(s) 120, 148, 195, 462
LguI GCTCTTC 1 cut(s) 59
LmnI GCTCC 2 cut(s) 538, 844
Lsp1109I GCAGC 3 cut(s) 322, 362, 661
LweI GCATC 2 cut(s) 550, 952
MaeI CTAG 2 cut(s) 848, 985
MaeII ACGT 2 cut(s) 245, 432
MaeIII GTNAC 3 cut(s) 181, 277, 392
MalI GATC 4 cut(s) 122, 150, 197, 464
MboI GATC 4 cut(s) 120, 148, 195, 462
MboII GAAGA 5 cut(s) 76, 158, 424, 472, 953
MflI RGATCY 3 cut(s) 120, 148, 195
MhlI GDGCHC 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 4 cut(s) 301, 587, 620, 787
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 1 cut(s) 938
MmeI TCCRAC 2 cut(s) 66, 553
MnlI CCTC 9 cut(s) 90, 106, 140, 553, 595, 814, 883, 931, 940
Mox20I TGGCCA 1 cut(s) 351
Mph1103I ATGCAT 1 cut(s) 957
MscI TGGCCA 1 cut(s) 351
MseI TTAA 6 cut(s) 293, 552, 579, 660, 747, 777
MslI CAYNNNNRTG 2 cut(s) 639, 960
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 2 cut(s) 159, 375
MspI CCGG 2 cut(s) 94, 966
MspR9I CCNGG 2 cut(s) 474, 672
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 2 cut(s) 474, 672
MwoI GCNNNNNNNGC 7 cut(s) 207, 255, 294, 316, 336, 384, 821
NdeI CATATG 1 cut(s) 934
NdeII GATC 4 cut(s) 120, 148, 195, 462
NlaIII CATG 7 cut(s) 35, 269, 713, 724, 889, 955, 959
NlaIV GGNNCC 1 cut(s) 617
NmuCI GTSAC 3 cut(s) 181, 277, 392
NsbI TGCGCA 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 957
NspI RCATGY 2 cut(s) 724, 955
PaeI GCATGC 1 cut(s) 724
PciSI GCTCTTC 1 cut(s) 59
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 2 cut(s) 4, 736
PkrI GCNGC 4 cut(s) 161, 312, 377, 651
PleI GAGTC 1 cut(s) 937
PmaCI CACGTG 1 cut(s) 433
PmlI CACGTG 1 cut(s) 433
PpsI GAGTC 1 cut(s) 937
Ppu21I YACGTR 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 472, 670
PspCI CACGTG 1 cut(s) 433
PspGI CCWGG 2 cut(s) 472, 670
PspN4I GGNNCC 1 cut(s) 617
PspPI GGNCC 3 cut(s) 370, 491, 968
PsrI GAACNNNNNNTAC 2 cut(s) 752, 784
PstNI CAGNNNCTG 1 cut(s) 655
PsuI RGATCY 3 cut(s) 120, 148, 195
RsaI GTAC 4 cut(s) 285, 323, 364, 782
RsaNI GTAC 4 cut(s) 284, 322, 363, 781
RseI CAYNNNNRTG 2 cut(s) 639, 960
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 6 cut(s) 293, 552, 579, 660, 747, 777
SatI GCNGC 4 cut(s) 160, 311, 376, 650
Sau3AI GATC 4 cut(s) 120, 148, 195, 462
Sau96I GGNCC 3 cut(s) 370, 491, 968
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 1 cut(s) 938
ScrFI CCNGG 2 cut(s) 474, 672
SduI GDGCHC 1 cut(s) 347
SfaNI GCATC 2 cut(s) 550, 952
SfcI CTRYAG 1 cut(s) 154
SinI GGWCC 2 cut(s) 370, 968
SmiMI CAYNNNNRTG 2 cut(s) 639, 960
SmlI CTYRAG 2 cut(s) 131, 924
SmoI CTYRAG 2 cut(s) 131, 924
SphI GCATGC 1 cut(s) 724
Sse9I AATT 4 cut(s) 301, 587, 620, 787
SsiI CCGC 3 cut(s) 159, 373, 830
SspI AATATT 3 cut(s) 420, 514, 576
SspMI CTAG 2 cut(s) 848, 985
StyD4I CCNGG 2 cut(s) 472, 670
StyI CCWWGG 2 cut(s) 259, 366
TaaI ACNGT 4 cut(s) 283, 775, 807, 980
TaiI ACGT 2 cut(s) 248, 435
TaqI TCGA 1 cut(s) 734
TasI AATT 4 cut(s) 301, 587, 620, 787
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 2 cut(s) 4, 736
Tru1I TTAA 6 cut(s) 293, 552, 579, 660, 747, 777
Tru9I TTAA 6 cut(s) 293, 552, 579, 660, 747, 777
TscAI CASTG 6 cut(s) 286, 352, 389, 701, 778, 822
TseFI GTSAC 3 cut(s) 181, 277, 392
TseI GCWGC 3 cut(s) 310, 375, 649
Tsp45I GTSAC 3 cut(s) 181, 277, 392
TspDTI ATGAA 3 cut(s) 17, 461, 729
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 6 cut(s) 286, 352, 389, 701, 778, 822
VpaK11BI GGWCC 2 cut(s) 370, 968
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 2 cut(s) 301, 787
XceI RCATGY 2 cut(s) 724, 955
XspI CTAG 2 cut(s) 848, 985
ZrmI AGTACT 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.