Rorug01G0097800

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000572
Physical Location & Seq
Forward (+)
16176148 .. 16176777
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0097800.1

Sequence Viewer

Length: 630 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTTTAGAGCAGATTCAGAGGATCTGTCTCCAGCTGCAATGGTACGGCCAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGCTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGAATCTTCTGCATCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGAAGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCAATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGAAAAAAAAAAAAATTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

209

Amino Acids

23.42

Weight (kDa)

9.11

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 4.8e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 491
AccIII TCCGGA 1 cut(s) 618
AciI CCGC 4 cut(s) 82, 265, 540, 625
AclWI GGATC 3 cut(s) 188, 363, 454
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 2 cut(s) 220, 467
AleI CACNNNNGTG 1 cut(s) 549
AluBI AGCT 5 cut(s) 130, 193, 398, 574, 599
AluI AGCT 5 cut(s) 130, 193, 398, 574, 599
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 188, 363, 454
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 618
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 50, 193
ApoI RAATTY 1 cut(s) 613
Asp700I GAANNNNTTC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 506
AsuII TTCGAA 1 cut(s) 372
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 576
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 62, 180
BccI CCATC 2 cut(s) 26, 524
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 3 cut(s) 51, 194, 625
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 3 cut(s) 52, 195, 626
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 3 cut(s) 6, 155, 623
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 575
Bpu14I TTCGAA 1 cut(s) 372
BpuEI CTTGAG 2 cut(s) 107, 590
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 618
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 342, 589
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 2 cut(s) 62, 180
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 619
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 3 cut(s) 256, 300, 576
Bsp13I TCCGGA 1 cut(s) 618
Bsp143I GATC 6 cut(s) 106, 180, 210, 308, 355, 446
Bsp1720I GCTNAGC 1 cut(s) 575
BspACI CCGC 4 cut(s) 82, 265, 540, 625
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 343, 588
BspEI TCCGGA 1 cut(s) 618
BspLI GGNNCC 3 cut(s) 6, 155, 623
BspPI GGATC 3 cut(s) 188, 363, 454
BspT104I TTCGAA 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 6 cut(s) 106, 180, 210, 308, 355, 446
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 351, 575
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 6 cut(s) 109, 183, 213, 311, 358, 449
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 106, 180, 210, 308, 355, 446
BstMWI GCNNNNNNNGC 3 cut(s) 79, 395, 585
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 62, 180
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 2 cut(s) 180, 446
BstYI RGATCY 2 cut(s) 180, 446
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 37, 292
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 1 cut(s) 202
CviAII CATG 6 cut(s) 70, 293, 301, 457, 491, 514
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 351, 575
DpnI GATC 6 cut(s) 108, 182, 212, 310, 357, 448
DpnII GATC 6 cut(s) 106, 180, 210, 308, 355, 446
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 256, 576
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 378
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 492
EcoT38I GRGCYC 2 cut(s) 256, 576
FaeI CATG 6 cut(s) 73, 296, 304, 460, 494, 517
FaqI GGGAC 1 cut(s) 139
FatI CATG 6 cut(s) 69, 292, 300, 456, 490, 513
Fnu4HI GCNGC 3 cut(s) 51, 194, 625
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 576
Fsp4HI GCNGC 3 cut(s) 51, 194, 625
GluI GCNGC 3 cut(s) 51, 194, 625
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 207
HapII CCGG 2 cut(s) 54, 619
Hin1II CATG 6 cut(s) 73, 296, 304, 460, 494, 517
HinfI GANTC 4 cut(s) 94, 117, 172, 374
HpaII CCGG 2 cut(s) 54, 619
HphI GGTGA 2 cut(s) 335, 506
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy188I TCNGA 4 cut(s) 111, 177, 286, 529
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 619
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyAV CCTTC 2 cut(s) 418, 482
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 196, 304, 383, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 395, 585
HpyF3I CTNAG 2 cut(s) 351, 575
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 6 cut(s) 73, 296, 304, 460, 494, 517
Kpn2I TCCGGA 1 cut(s) 618
Kzo9I GATC 6 cut(s) 106, 180, 210, 308, 355, 446
LmnI GCTCC 2 cut(s) 127, 621
LpnPI CCDG 9 cut(s) 29, 67, 73, 203, 221, 297, 363, 384, 598
Lsp1109I GCAGC 2 cut(s) 62, 180
LweI GCATC 1 cut(s) 392
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 509, 542
MalI GATC 6 cut(s) 108, 182, 212, 310, 357, 448
MboI GATC 6 cut(s) 106, 180, 210, 308, 355, 446
MboII GAAGA 5 cut(s) 280, 283, 369, 384, 529
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 2 cut(s) 180, 446
MhlI GDGCHC 3 cut(s) 256, 300, 576
MluCI AATT 2 cut(s) 340, 613
Mph1103I ATGCAT 1 cut(s) 492
MroI TCCGGA 1 cut(s) 618
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 2 cut(s) 366, 414
MslI CAYNNNNRTG 1 cut(s) 549
MspA1I CMGCKG 3 cut(s) 193, 398, 627
MspI CCGG 2 cut(s) 54, 619
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 79, 395, 585
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 106, 180, 210, 308, 355, 446
NlaIII CATG 6 cut(s) 73, 296, 304, 460, 494, 517
NlaIV GGNNCC 3 cut(s) 6, 155, 623
NmuCI GTSAC 1 cut(s) 542
NsiI ATGCAT 1 cut(s) 492
NspI RCATGY 1 cut(s) 73
NspV TTCGAA 1 cut(s) 372
OliI CACNNNNGTG 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 4 cut(s) 94, 117, 172, 374
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 3 cut(s) 52, 195, 626
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 623
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 446
PvuII CAGCTG 2 cut(s) 193, 398
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 549
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 2 cut(s) 366, 414
SatI GCNGC 3 cut(s) 51, 194, 625
Sau3AI GATC 6 cut(s) 106, 180, 210, 308, 355, 446
Sau96I GGNCC 2 cut(s) 153, 276
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 576
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 2 cut(s) 122, 569
SmoI CTYRAG 2 cut(s) 122, 569
Sse9I AATT 2 cut(s) 340, 613
SsiI CCGC 4 cut(s) 82, 265, 540, 625
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 213, 372
TasI AATT 2 cut(s) 340, 613
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 4 cut(s) 94, 117, 172, 374
Tru1I TTAA 2 cut(s) 366, 414
Tru9I TTAA 2 cut(s) 366, 414
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 2 cut(s) 50, 193
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 3 cut(s) 281, 467, 530
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 153, 276
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 471
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.