Rmu_sc0000441.1_g000032

DnaJ protein homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000441.1
Physical Location & Seq
Reverse (-)
111068 .. 111505
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000441.1_g000032.1.cds

Sequence Viewer

Length: 438 bp
atgttaaagattgattatgtcaactttcatagaagatgtggttcactcattgaaggtctctttagaagacctatatcttggaacctcaaagaaactctccctatctcgcaatgtgttgtgctccaagtgcaaaggcaaggggtcaaaatttggagccttgaccaactgtggtggttacgtttccaaggaactggtatggaggtcactattaggcatcttagaccttctatgattcaacagatttaccatgctagcaataaatataagggtactggagagaccatcagtgacaaggattgctgtggacagtgcaagggagagaaagttgttcaagaaaagaaagttttagaagtccatatggagaaggatatgcagaatggacagaagattgcatttcctggtgaagttgatgaagctctacagtcactattgatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.8

Weight (kDa)

8.84

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 147
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 3 cut(s) 53, 236, 332
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 1 cut(s) 416
AluI AGCT 1 cut(s) 416
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 62, 272
ApoI RAATTY 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 413
AsuNHI GCTAGC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 62, 272
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 399
BmiI GGNNCC 2 cut(s) 83, 155
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 294
BsaI GGTCTC 2 cut(s) 62, 272
BsaJI CCNNGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse1I ACTGG 2 cut(s) 196, 277
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 196, 277
BsiHKAI GWGCWC 1 cut(s) 123
BsmAI GTCTC 2 cut(s) 62, 272
Bso31I GGTCTC 2 cut(s) 62, 272
Bsp1286I GDGCHC 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 83, 155
BspOI GCTAGC 1 cut(s) 255
BspTNI GGTCTC 2 cut(s) 62, 272
BsrDI GCAATG 1 cut(s) 116
BsrI ACTGG 2 cut(s) 196, 277
BssECI CCNNGG 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 3 cut(s) 168, 309, 423
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 218
BstMAI GTCTC 2 cut(s) 62, 272
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 292, 314
Cac8I GCNNGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 1 cut(s) 248
CviJI RGCY 2 cut(s) 156, 416
CviKI_1 RGCY 2 cut(s) 156, 416
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 184
Eco31I GGTCTC 2 cut(s) 62, 272
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 251
FatI CATG 1 cut(s) 247
FauNDI CATATG 1 cut(s) 357
FspBI CTAG 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 294
Hin1II CATG 1 cut(s) 251
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 232
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 3 cut(s) 22, 44, 305
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 3 cut(s) 22, 44, 305
HpyAV CCTTC 3 cut(s) 47, 234, 358
HpyCH4III ACNGT 3 cut(s) 168, 309, 423
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 4 cut(s) 130, 312, 373, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 1 cut(s) 251
LmnI GCTCC 2 cut(s) 126, 153
LpnPI CCDG 4 cut(s) 177, 258, 384, 411
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 4 cut(s) 174, 202, 287, 423
MboII GAAGA 3 cut(s) 45, 78, 397
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 147
MnlI CCTC 2 cut(s) 95, 193
MseI TTAA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 127
NdeI CATATG 1 cut(s) 357
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 2 cut(s) 83, 155
NmuCI GTSAC 3 cut(s) 202, 287, 423
PfeI GAWTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 83, 155
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 58, 73, 87, 181, 204, 226, 418
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 419
Sse9I AATT 1 cut(s) 147
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 3 cut(s) 168, 309, 423
TaiI ACGT 1 cut(s) 181
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 2 cut(s) 292, 314
TseFI GTSAC 3 cut(s) 202, 287, 423
Tsp45I GTSAC 3 cut(s) 202, 287, 423
TspDTI ATGAA 2 cut(s) 17, 426
TspRI CASTG 2 cut(s) 292, 314
XapI RAATTY 1 cut(s) 147
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.