Rmu_sc0004058.1_g000007

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004058.1
OG0000572
Physical Location & Seq
Reverse (-)
22341 .. 23788
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004058.1_g000007.1.cds

Sequence Viewer

Length: 1020 bp
atgggagggggtggccatgacccatttgacatcttctcctctttctttggtggtggtggcagcccatttggaggcatgggaggtggtagtagcagaggacggagacagagacgtggagaagatgtggttcacccattgaaggtctctttggaagacctatatcttggaacctcgaagaaactttccctatctcgcaatgtgttgtgctctaagtgcaaaggtaaaggatcaaaatctggagcctcaaccaagtgtggtggttgccaaggaactggtatgaaggtcactattagacatcttggaccctctatgattcaacaaatgcagcatgcttgcaatgaatgtaagggtaccggagagaccattagtgacaaggaccgctgtggacagtgcaagggggagaaggttgtccaacagaagaaagttttagaagtccatgtggagaagggtatgcagaatggacagaagatcacatttcctggcgaagctgatgaagctccagacacaatcactggtgatatagtgttcatcattcagcaaaaggaacatcccaagttcaagagaaagatggatgacctttttgtggagcactctttatcgcttacagatgctctatgtggtttccagtttgtgctgaaccatttggatggcaggcagctacttatcaaatcaaaccctggcgaagttgtgaagcctgattcgtttaaggccatcaatgatgagggtatgccaatgtaccagaggccattcatgaagggcaagctgtacatccatttttcggtggacttccctgaaactctgagccctgagcaggtcaaggctttggaagctgctcttccaagggcatcacatcaggagctgacagacatggagttggatgagtgtgaggagacgactctgcatgatgtgaacatggaggaggagatgaggaggaaacagcaccaggctcattcggaggcgtacgatgaggacgacgacatgcctggtggtgcacagagggtgcaatgcgcacagcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

339

Amino Acids

37.37

Weight (kDa)

6.13

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1009
Acc36I ACCTGC 1 cut(s) 802
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AciI CCGC 1 cut(s) 379
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 13
AfaI GTAC 4 cut(s) 352, 737, 767, 962
AfiI CCNNNNNNNGG 5 cut(s) 71, 139, 583, 778, 811
AgsI TTSAA 3 cut(s) 139, 317, 559
AjiI CACGTC 1 cut(s) 113
AjnI CCWGG 4 cut(s) 478, 676, 942, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AleI CACNNNNGTG 1 cut(s) 1015
AluBI AGCT 6 cut(s) 488, 497, 658, 763, 830, 859
AluI AGCT 6 cut(s) 488, 497, 658, 763, 830, 859
Alw21I GWGCWC 3 cut(s) 209, 591, 994
Alw26I GTCTC 5 cut(s) 97, 103, 148, 353, 884
Alw44I GTGCAC 1 cut(s) 990
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 859
AoxI GGCC 3 cut(s) 13, 708, 743
ApaLI GTGCAC 1 cut(s) 990
ApeKI GCWGC 4 cut(s) 60, 325, 655, 830
Asp718I GGTACC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 1010
AspS9I GGNCC 2 cut(s) 302, 376
AsuHPI GGTGA 2 cut(s) 122, 527
AvaII GGWCC 2 cut(s) 302, 376
BaeGI GKGCMC 1 cut(s) 994
BalI TGGCCA 1 cut(s) 15
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 806
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 3 cut(s) 209, 591, 994
BbvI GCAGC 4 cut(s) 72, 337, 667, 817
BccI CCATC 3 cut(s) 562, 641, 719
BciT130I CCWGG 4 cut(s) 480, 678, 944, 984
BcoDI GTCTC 5 cut(s) 97, 103, 148, 353, 884
BfuAI ACCTGC 1 cut(s) 802
BisI GCNGC 4 cut(s) 61, 326, 656, 831
BlsI GCNGC 4 cut(s) 62, 327, 657, 832
Bme1390I CCNGG 4 cut(s) 480, 678, 944, 984
Bme18I GGWCC 2 cut(s) 302, 376
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 302, 376
BmiI GGNNCC 4 cut(s) 169, 241, 304, 352
BmrFI CCNGG 4 cut(s) 480, 678, 944, 984
BmsI GCATC 2 cut(s) 598, 854
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 2 cut(s) 258, 483
Bpu10I CCTNAGC 1 cut(s) 807
BsaBI GATNNNNATC 1 cut(s) 232
BsaI GGTCTC 2 cut(s) 148, 353
BsaJI CCNNGG 3 cut(s) 265, 676, 839
BsaWI WCCGGW 1 cut(s) 353
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 108, 138
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 139, 583, 778, 811
Bse1I ACTGG 3 cut(s) 277, 517, 625
Bse3DI GCAATG 3 cut(s) 202, 343, 1010
Bse8I GATNNNNATC 1 cut(s) 232
BseBI CCWGG 4 cut(s) 480, 678, 944, 984
BseDI CCNNGG 3 cut(s) 265, 676, 839
BseGI GGATG 5 cut(s) 547, 577, 652, 768, 883
BseJI GATNNNNATC 1 cut(s) 232
BseLI CCNNNNNNNGG 5 cut(s) 71, 139, 583, 778, 811
BseMI GCAATG 3 cut(s) 202, 343, 1010
BseMII CTCAG 2 cut(s) 791, 798
BseNI ACTGG 3 cut(s) 277, 517, 625
BseRI GAGGAG 5 cut(s) 28, 902, 932, 935, 943
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 4 cut(s) 72, 337, 667, 817
BshFI GGCC 3 cut(s) 15, 710, 745
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 3 cut(s) 209, 591, 994
BsiSI CCGG 1 cut(s) 354
BsiWI CGTACG 1 cut(s) 960
BslI CCNNNNNNNGG 5 cut(s) 71, 139, 583, 778, 811
BsmAI GTCTC 5 cut(s) 97, 103, 148, 353, 884
BsmBI CGTCTC 2 cut(s) 103, 884
BsnI GGCC 3 cut(s) 15, 710, 745
Bso31I GGTCTC 2 cut(s) 148, 353
Bsp1286I GDGCHC 4 cut(s) 209, 591, 806, 994
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 2 cut(s) 227, 468
BspACI CCGC 1 cut(s) 379
BspANI GGCC 3 cut(s) 15, 710, 745
BspCNI CTCAG 2 cut(s) 792, 799
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 4 cut(s) 169, 241, 304, 352
BspMI ACCTGC 1 cut(s) 802
BspPI GGATC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 840
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 2 cut(s) 148, 353
BsrDI GCAATG 3 cut(s) 202, 343, 1010
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 3 cut(s) 277, 517, 625
BssECI CCNNGG 3 cut(s) 265, 676, 839
BssMI GATC 2 cut(s) 227, 468
BssT1I CCWWGG 2 cut(s) 265, 839
Bst2UI CCWGG 4 cut(s) 480, 678, 944, 984
Bst4CI ACNGT 1 cut(s) 390
Bst6I CTCTTC 1 cut(s) 840
BstAUI TGTACA 1 cut(s) 765
BstC8I GCNNGC 4 cut(s) 330, 334, 653, 761
BstDEI CTNAG 3 cut(s) 210, 800, 807
BstF5I GGATG 5 cut(s) 547, 577, 652, 768, 883
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 2 cut(s) 230, 471
BstMAI GTCTC 5 cut(s) 97, 103, 148, 353, 884
BstMBI GATC 2 cut(s) 227, 468
BstMWI GCNNNNNNNGC 3 cut(s) 213, 494, 827
BstNI CCWGG 4 cut(s) 480, 678, 944, 984
BstNSI RCATGY 2 cut(s) 332, 982
BstSCI CCNGG 4 cut(s) 478, 676, 942, 982
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 4 cut(s) 72, 337, 667, 817
BstV2I GAAGAC 1 cut(s) 159
BstXI CCANNNNNNTGG 2 cut(s) 272, 647
BsuRI GGCC 3 cut(s) 15, 710, 745
BtrI CACGTC 1 cut(s) 113
BtsCI GGATG 5 cut(s) 547, 577, 652, 768, 883
BtsIMutI CAGTG 2 cut(s) 395, 510
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 4 cut(s) 330, 334, 653, 761
CaiI CAGNNNCTG 1 cut(s) 859
CciI TCATGA 1 cut(s) 750
CfoI GCGC 1 cut(s) 1010
Cfr13I GGNCC 2 cut(s) 302, 376
Csp6I GTAC 4 cut(s) 351, 736, 766, 961
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 9 cut(s) 17, 76, 329, 437, 751, 868, 902, 913, 979
CviQI GTAC 4 cut(s) 351, 736, 766, 961
DdeI CTNAG 3 cut(s) 210, 800, 807
DpnI GATC 2 cut(s) 229, 470
DpnII GATC 2 cut(s) 227, 468
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Eco130I CCWWGG 2 cut(s) 265, 839
Eco24I GRGCYC 1 cut(s) 806
Eco31I GGTCTC 2 cut(s) 148, 353
Eco47I GGWCC 2 cut(s) 302, 376
EcoRII CCWGG 4 cut(s) 478, 676, 942, 982
EcoT14I CCWWGG 2 cut(s) 265, 839
EcoT38I GRGCYC 1 cut(s) 806
ErhI CCWWGG 2 cut(s) 265, 839
Esp3I CGTCTC 2 cut(s) 103, 884
FaeI CATG 9 cut(s) 20, 79, 332, 440, 754, 871, 905, 916, 982
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FatI CATG 9 cut(s) 16, 75, 328, 436, 750, 867, 901, 912, 978
Fnu4HI GCNGC 4 cut(s) 61, 326, 656, 831
FokI GGATG 5 cut(s) 534, 584, 659, 755, 890
FriOI GRGCYC 1 cut(s) 806
Fsp4HI GCNGC 4 cut(s) 61, 326, 656, 831
FspAI RTGCGCAY 1 cut(s) 1009
FspI TGCGCA 1 cut(s) 1009
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 4 cut(s) 61, 326, 656, 831
GsuI CTGGAG 2 cut(s) 258, 483
HaeIII GGCC 3 cut(s) 15, 710, 745
HapII CCGG 1 cut(s) 354
HhaI GCGC 1 cut(s) 1010
Hin1II CATG 9 cut(s) 20, 79, 332, 440, 754, 871, 905, 916, 982
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HinfI GANTC 3 cut(s) 313, 698, 895
HpaII CCGG 1 cut(s) 354
HphI GGTGA 2 cut(s) 122, 527
Hpy166II GTNNAC 5 cut(s) 130, 386, 784, 910, 992
Hpy188I TCNGA 2 cut(s) 801, 955
Hpy188III TCNNGA 5 cut(s) 237, 500, 559, 751, 854
Hpy8I GTNNAC 5 cut(s) 130, 386, 784, 910, 992
Hpy99I CGWCG 1 cut(s) 977
HpyAV CCTTC 5 cut(s) 133, 274, 397, 439, 748
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 8 cut(s) 216, 325, 336, 393, 454, 901, 992, 1003
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 494, 827
HpyF3I CTNAG 3 cut(s) 210, 800, 807
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 9 cut(s) 20, 79, 332, 440, 754, 871, 905, 916, 982
HspAI GCGC 1 cut(s) 1008
KpnI GGTACC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 227, 468
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 4 cut(s) 239, 502, 586, 856
Lsp1109I GCAGC 4 cut(s) 72, 337, 667, 817
LweI GCATC 2 cut(s) 598, 854
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 283, 368
MalI GATC 2 cut(s) 229, 470
MboI GATC 2 cut(s) 227, 468
MboII GAAGA 7 cut(s) 25, 131, 164, 187, 430, 478, 827
MhlI GDGCHC 4 cut(s) 209, 591, 806, 994
MlsI TGGCCA 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 1 cut(s) 889
MmeI TCCRAC 2 cut(s) 436, 855
Mox20I TGGCCA 1 cut(s) 15
MscI TGGCCA 1 cut(s) 15
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 2 cut(s) 645, 1015
Msp20I TGGCCA 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 381
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 4 cut(s) 480, 678, 944, 984
MvaI CCWGG 4 cut(s) 480, 678, 944, 984
MwoI GCNNNNNNNGC 3 cut(s) 213, 494, 827
NdeII GATC 2 cut(s) 227, 468
NlaIII CATG 9 cut(s) 20, 79, 332, 440, 754, 871, 905, 916, 982
NlaIV GGNNCC 4 cut(s) 169, 241, 304, 352
NmuCI GTSAC 2 cut(s) 283, 368
NsbI TGCGCA 1 cut(s) 1009
NspI RCATGY 2 cut(s) 332, 982
OliI CACNNNNGTG 1 cut(s) 1015
PaeI GCATGC 1 cut(s) 332
PagI TCATGA 1 cut(s) 750
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 969
PfeI GAWTC 2 cut(s) 313, 698
Pfl23II CGTACG 1 cut(s) 960
PkrI GCNGC 4 cut(s) 62, 327, 657, 832
PleI GAGTC 1 cut(s) 889
PpsI GAGTC 1 cut(s) 889
Psp6I CCWGG 4 cut(s) 478, 676, 942, 982
PspGI CCWGG 4 cut(s) 478, 676, 942, 982
PspLI CGTACG 1 cut(s) 960
PspN4I GGNNCC 4 cut(s) 169, 241, 304, 352
PspPI GGNCC 2 cut(s) 302, 376
PstNI CAGNNNCTG 1 cut(s) 859
RsaI GTAC 4 cut(s) 352, 737, 767, 962
RsaNI GTAC 4 cut(s) 351, 736, 766, 961
RseI CAYNNNNRTG 2 cut(s) 645, 1015
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 4 cut(s) 61, 326, 656, 831
Sau3AI GATC 2 cut(s) 227, 468
Sau96I GGNCC 2 cut(s) 302, 376
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 4 cut(s) 480, 678, 944, 984
SduI GDGCHC 4 cut(s) 209, 591, 806, 994
SfaNI GCATC 2 cut(s) 598, 854
SinI GGWCC 2 cut(s) 302, 376
SmiMI CAYNNNNRTG 2 cut(s) 645, 1015
SphI GCATGC 1 cut(s) 332
SsiI CCGC 1 cut(s) 379
StyD4I CCNGG 4 cut(s) 478, 676, 942, 982
StyI CCWWGG 2 cut(s) 265, 839
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 173
TatI WGTACW 1 cut(s) 765
TfiI GAWTC 2 cut(s) 313, 698
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 2 cut(s) 395, 517
TseFI GTSAC 2 cut(s) 283, 368
TseI GCWGC 4 cut(s) 60, 325, 655, 830
Tsp45I GTSAC 2 cut(s) 283, 368
TspDTI ATGAA 6 cut(s) 293, 354, 507, 517, 739, 767
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 395, 517
VneI GTGCAC 1 cut(s) 990
VpaK11BI GGWCC 2 cut(s) 302, 376
XceI RCATGY 2 cut(s) 332, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.