RchiOBHm_Chr4g0428981

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000572
Physical Location & Seq
Forward (+)
53896081 .. 53897155
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39782

Sequence Viewer

Length: 459 bp
ATGTACTACTGTTATGAGTGCAAGGGCACTGGCCAGACCATTCGTGCCGAGGACCGCTGCCAGCAGTGCAAGGGTGACAAGGTTGTGCTGGAGAAGAAAATATTGGAAGTCCACGTGGATATAGGAATTAAAAACGGGCAGAAGATCATATTCCCTGGCGAAGCTCACAAAGGGCCTAATACCATCACAGGTAATATTGTTATTGTTGTCCAACAGAAGGAGCATCCCAAGTTTAAGTTGACACATTTGGACGGTAGGCAGCTTCTGATTAAGTCTGAACCTGGAGAAGTTGTCAATCCTAATCAGTGCAAAGCTATACATGATGAAGGCATGCCAATATACTCGAATCCATTTATTAAGGGCAAGTTGTATGTTCAGTTCACTGTTACGTACCCAAATTCCTTGAGCCCCGAACTGTGCAAGGCACTGGAGGCTGTGCTGCCTTGCGGGTCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

8.12

Isoelectric Point (pI)

18.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 11 - 82 3.3e-10 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 55, 447
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 397
AcvI CACGTG 1 cut(s) 115
AfaI GTAC 2 cut(s) 5, 392
AfiI CCNNNNNNNGG 1 cut(s) 217
AjnI CCWGG 2 cut(s) 154, 280
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 164, 262, 314
AluI AGCT 3 cut(s) 164, 262, 314
AlwNI CAGNNNCTG 1 cut(s) 265
AoxI GGCC 2 cut(s) 31, 173
ApeKI GCWGC 3 cut(s) 57, 259, 439
ApoI RAATTY 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 52, 173
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 33
BanII GRGCYC 1 cut(s) 410
BbrPI CACGTG 1 cut(s) 115
BbvI GCAGC 3 cut(s) 44, 271, 426
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 2 cut(s) 156, 282
BfaI CTAG 1 cut(s) 457
BisI GCNGC 3 cut(s) 58, 260, 440
BlsI GCNGC 3 cut(s) 59, 261, 441
Bme1390I CCNGG 2 cut(s) 156, 282
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 52, 173
BmrFI CCNGG 2 cut(s) 156, 282
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 3 cut(s) 110, 303, 449
BpuEI CTTGAG 1 cut(s) 424
BsaAI YACGTR 2 cut(s) 115, 390
BsaJI CCNNGG 2 cut(s) 48, 154
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 2 cut(s) 34, 432
BseBI CCWGG 2 cut(s) 156, 282
BseDI CCNNGG 2 cut(s) 48, 154
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 217
BseNI ACTGG 2 cut(s) 34, 432
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 3 cut(s) 44, 271, 426
BshFI GGCC 2 cut(s) 33, 175
BslI CCNNNNNNNGG 1 cut(s) 217
BsnI GGCC 2 cut(s) 33, 175
Bsp1286I GDGCHC 2 cut(s) 29, 410
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 2 cut(s) 55, 447
BspANI GGCC 2 cut(s) 33, 175
BsrI ACTGG 2 cut(s) 34, 432
BssECI CCNNGG 2 cut(s) 48, 154
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 156, 282
Bst4CI ACNGT 4 cut(s) 11, 254, 385, 417
BstBAI YACGTR 2 cut(s) 115, 390
BstC8I GCNNGC 2 cut(s) 62, 332
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 66, 431
BstNI CCWGG 2 cut(s) 156, 282
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 154, 280
BstSLI GKGCMC 1 cut(s) 29
BstSNI TACGTA 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 44, 271, 426
BsuRI GGCC 2 cut(s) 33, 175
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 5 cut(s) 27, 71, 311, 381, 425
Cac8I GCNNGC 2 cut(s) 62, 332
CaiI CAGNNNCTG 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 52, 173
Csp6I GTAC 2 cut(s) 4, 391
CviAII CATG 2 cut(s) 320, 331
CviJI RGCY 7 cut(s) 33, 164, 175, 262, 314, 408, 434
CviKI_1 RGCY 7 cut(s) 33, 164, 175, 262, 314, 408, 434
CviQI GTAC 2 cut(s) 4, 391
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 31
Eco105I TACGTA 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 52
Eco72I CACGTG 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 154, 280
EcoT38I GRGCYC 1 cut(s) 410
FaeI CATG 2 cut(s) 323, 334
FaiI YATR 8 cut(s) 15, 122, 149, 317, 321, 332, 340, 372
FatI CATG 2 cut(s) 319, 330
FauI CCCGC 1 cut(s) 440
Fnu4HI GCNGC 3 cut(s) 58, 260, 440
FokI GGATG 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 3 cut(s) 58, 260, 440
FspBI CTAG 1 cut(s) 457
GluI GCNGC 3 cut(s) 58, 260, 440
GsuI CTGGAG 3 cut(s) 110, 303, 449
HaeIII GGCC 2 cut(s) 33, 175
Hin1II CATG 2 cut(s) 323, 334
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 1 cut(s) 346
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 112, 240, 381
Hpy188I TCNGA 3 cut(s) 267, 277, 454
Hpy8I GTNNAC 3 cut(s) 112, 240, 381
HpyAV CCTTC 2 cut(s) 211, 320
HpyCH4III ACNGT 4 cut(s) 11, 254, 385, 417
HpyCH4IV ACGT 2 cut(s) 114, 389
HpyCH4V TGCA 4 cut(s) 21, 69, 309, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 431
HpySE526I ACGT 2 cut(s) 114, 389
Hsp92II CATG 2 cut(s) 323, 334
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 3 cut(s) 44, 271, 426
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 457
MaeII ACGT 2 cut(s) 114, 389
MaeIII GTNAC 2 cut(s) 74, 385
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 106, 154
MhlI GDGCHC 2 cut(s) 29, 410
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 2 cut(s) 126, 397
MluNI TGGCCA 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 43, 424
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 4 cut(s) 129, 234, 270, 357
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 156, 282
MvaI CCWGG 2 cut(s) 156, 282
MwoI GCNNNNNNNGC 2 cut(s) 66, 431
NdeII GATC 1 cut(s) 144
NlaIII CATG 2 cut(s) 323, 334
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 3 cut(s) 59, 261, 441
PmaCI CACGTG 1 cut(s) 115
PmlI CACGTG 1 cut(s) 115
Ppu21I YACGTR 2 cut(s) 115, 390
Psp6I CCWGG 2 cut(s) 154, 280
PspCI CACGTG 1 cut(s) 115
PspGI CCWGG 2 cut(s) 154, 280
PspPI GGNCC 2 cut(s) 52, 173
PsrI GAACNNNNNNTAC 2 cut(s) 362, 394
PstNI CAGNNNCTG 1 cut(s) 265
RsaI GTAC 2 cut(s) 5, 392
RsaNI GTAC 2 cut(s) 4, 391
SaqAI TTAA 4 cut(s) 129, 234, 270, 357
SatI GCNGC 3 cut(s) 58, 260, 440
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 52, 173
ScrFI CCNGG 2 cut(s) 156, 282
SduI GDGCHC 2 cut(s) 29, 410
SetI ASST 8 cut(s) 84, 117, 166, 193, 264, 283, 316, 392
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
SnaBI TACGTA 1 cut(s) 390
SphI GCATGC 1 cut(s) 334
Sse9I AATT 2 cut(s) 126, 397
SsiI CCGC 2 cut(s) 55, 447
SspI AATATT 2 cut(s) 102, 196
SspMI CTAG 1 cut(s) 457
StyD4I CCNGG 2 cut(s) 154, 280
TaaI ACNGT 4 cut(s) 11, 254, 385, 417
TaiI ACGT 2 cut(s) 117, 392
TaqI TCGA 1 cut(s) 344
TasI AATT 2 cut(s) 126, 397
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 4 cut(s) 129, 234, 270, 357
Tru9I TTAA 4 cut(s) 129, 234, 270, 357
TscAI CASTG 5 cut(s) 34, 71, 311, 388, 432
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 3 cut(s) 57, 259, 439
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 5 cut(s) 34, 71, 311, 388, 432
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 397
XceI RCATGY 1 cut(s) 334
XspI CTAG 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.