Rorug01G0097900

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000572
Physical Location & Seq
Forward (+)
16212285 .. 16214360
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0097900.1

Sequence Viewer

Length: 1395 bp
ATGCAGATGACCAATGATACGGTTGGGAACGGAAGTTGGGCTGTATCATTGGGTGCAGACATGGAGACGCAACAACCGCTAGATCCTTTGTACCATTACAACATGGAGGTGAATTCTGCTATGAATGATACAGCGGAGGAGACTGAAAATCCAAATTATGCTGAAAGATCGAGTGCAGCAAAGATGCGTCGATTTCGGACTAATAGAGGCCCTAATAGGCCTAGATGGGCCGCAAACGGGACTGTGGAGAAACTGAAGTTTAATGCCAAAGGACAACCAGTTGCACCACCTCACACAGTTGCCAGGTTCTCTAGGTTCTTGGGGTGGCTCGCATTGGAGTCATCGTTCTTCCCGATTGATAATACTGATTGGAGAAATTTCTACAAGGCCTCAAACATGGATGCTGCTTGGGAGAGGATTAAGGGAACGATTGATTGGAGCAATGTAGATGTGGCAATGCAGCCATTTGTTCGCCGAGTCTGCGAACTCAAATTGAATGATAGGTGGAAGAGTTATAAGTCACGACTCAGGAGGTTATACTACAAGCCAAACATCGGTACTCCAAGGAGGTTTGCCTGCAGCCACCCTAGTGTGAACCAAGCCCAATGGAGGTCGCTCGTGGCTGAGTGGGATAAAAAGCCTAATCAGGAACGTGCTTTGACATATGCCAACAATAGGAAGGAGCTAAGGTCGAGTCACACTAATGGAACAAAGACTTTTGCACAGATGCGATATGAATATGAACAAGTGAATGGTTATGCTCCTGATCGCATAACATTTTTCACAATGACACATACTCGTGAAGACGGAACAGTTGTAGATGCCGAGTCAGCAGATATAATAGCCAAGTTCAAAAATGGATTAAAGGAGTATGAAGATAGGCAGGAGATACTGACAGATGAGATCCGGCACAAAGTGTACAGTGATGTACTTGGTCCAGAGAAAAGGAATCGCGTTAGAGGTTATGGTTTAGGTGTCCAATTCACTGATGTTCCAGGAGTTGTCACTGAGGCAAGAGGTATGTGTAGGGAAGTGCATACTCTCAGAGCTGCGTGGGAGCAACAAAAGCAAGCAACAGAAGAAGCTCATGTTGAAATAGAGAGTTTAAGGTTGGCTAATATCAACTTGGCTGAAGAGTTGAGACACGAGCAAGCCGTAACAATGGAGGCACACAAGAAAAAGATGGAAGATTCATTTGCAAAAATGAAGGAAAACATGATGAATGAGGTAAACAAGTTGTTTCATAACTCATCAAGTACTGATGGTGAAAGAGGTGTAATGGAGAATCAAATGGCATCAAAGGACAGAATAGATGAAGAGGATTGTGTAATGGCTGATCAGGAGAATGTTGAGGTCTATTCACCAATTATGCCATTTGATCTGAACAGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

464

Amino Acids

53.65

Weight (kDa)

6.46

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 199 - 326 6.6e-26 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AccII CGCG 1 cut(s) 954
AciI CCGC 3 cut(s) 77, 134, 231
AclWI GGATC 2 cut(s) 77, 898
AcsI RAATTY 2 cut(s) 112, 376
AcuI CTGAAG 2 cut(s) 275, 1152
AdeI CACNNNGTG 1 cut(s) 916
AfaI GTAC 5 cut(s) 92, 559, 920, 930, 1258
AfiI CCNNNNNNNGG 4 cut(s) 237, 554, 609, 675
AgsI TTSAA 3 cut(s) 496, 853, 1094
AjnI CCWGG 2 cut(s) 302, 994
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AleI CACNNNNGTG 1 cut(s) 588
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
AluBI AGCT 3 cut(s) 685, 1049, 1085
AluI AGCT 3 cut(s) 685, 1049, 1085
Alw26I GTCTC 3 cut(s) 59, 134, 1135
AlwI GGATC 2 cut(s) 77, 898
AoxI GGCC 4 cut(s) 208, 218, 228, 387
ApeKI GCWGC 5 cut(s) 176, 404, 460, 579, 1049
ApoI RAATTY 2 cut(s) 112, 376
AspS9I GGNCC 3 cut(s) 209, 228, 935
AsuHPI GGTGA 3 cut(s) 121, 1277, 1353
AvaII GGWCC 1 cut(s) 935
BauI CACGAG 3 cut(s) 617, 798, 1145
BbsI GAAGAC 1 cut(s) 810
BbvI GCAGC 5 cut(s) 188, 391, 472, 591, 1036
BccI CCATC 3 cut(s) 219, 1177, 1256
BceAI ACGGC 1 cut(s) 1139
BciT130I CCWGG 2 cut(s) 304, 996
BclI TGATCA 1 cut(s) 1336
BcoDI GTCTC 3 cut(s) 59, 134, 1135
BfaI CTAG 4 cut(s) 80, 222, 312, 588
BfmI CTRYAG 1 cut(s) 577
BisI GCNGC 6 cut(s) 177, 231, 405, 461, 580, 1050
BlsI GCNGC 6 cut(s) 178, 232, 406, 462, 581, 1051
BmcAI AGTACT 1 cut(s) 1258
Bme1390I CCNGG 2 cut(s) 304, 996
Bme18I GGWCC 1 cut(s) 935
BmgT120I GGNCC 3 cut(s) 209, 228, 935
BmrFI CCNGG 2 cut(s) 304, 996
BmsI GCATC 5 cut(s) 174, 391, 717, 811, 1304
BpiI GAAGAC 1 cut(s) 810
Bpu10I CCTNAGC 1 cut(s) 686
BsaJI CCNNGG 1 cut(s) 563
BsaXI ACNNNNNCTCC 4 cut(s) 329, 359, 674, 704
Bsc4I CCNNNNNNNGG 4 cut(s) 237, 554, 609, 675
Bse1I ACTGG 1 cut(s) 278
Bse3DI GCAATG 2 cut(s) 448, 462
BseBI CCWGG 2 cut(s) 304, 996
BseDI CCNNGG 1 cut(s) 563
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 4 cut(s) 237, 554, 609, 675
BseMI GCAATG 2 cut(s) 448, 462
BseMII CTCAG 4 cut(s) 541, 615, 999, 1057
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 5 cut(s) 188, 391, 472, 591, 1036
BsgI GTGCAG 2 cut(s) 75, 195
Bsh1236I CGCG 1 cut(s) 954
BshFI GGCC 4 cut(s) 210, 220, 230, 389
BsiSI CCGG 1 cut(s) 907
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 4 cut(s) 237, 554, 609, 675
BsmAI GTCTC 3 cut(s) 59, 134, 1135
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 4 cut(s) 210, 220, 230, 389
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 6 cut(s) 82, 167, 766, 903, 1336, 1378
BspACI CCGC 3 cut(s) 77, 134, 231
BspANI GGCC 4 cut(s) 210, 220, 230, 389
BspCNI CTCAG 4 cut(s) 540, 616, 1000, 1056
BspFNI CGCG 1 cut(s) 954
BspMAI CTGCAG 1 cut(s) 581
BspPI GGATC 2 cut(s) 77, 898
BsrDI GCAATG 2 cut(s) 448, 462
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 6 cut(s) 82, 167, 766, 903, 1336, 1378
BssSI CACGAG 3 cut(s) 617, 798, 1145
BssT1I CCWWGG 1 cut(s) 563
Bst2BI CACGAG 3 cut(s) 617, 798, 1145
Bst2UI CCWGG 2 cut(s) 304, 996
Bst4CI ACNGT 6 cut(s) 22, 244, 298, 814, 923, 1388
Bst6I CTCTTC 3 cut(s) 503, 1128, 1311
BstAUI TGTACA 1 cut(s) 918
BstC8I GCNNGC 4 cut(s) 330, 577, 1071, 1152
BstDEI CTNAG 5 cut(s) 527, 624, 686, 1008, 1043
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 954
BstKTI GATC 6 cut(s) 85, 170, 769, 906, 1339, 1381
BstMAI GTCTC 3 cut(s) 59, 134, 1135
BstMBI GATC 6 cut(s) 82, 167, 766, 903, 1336, 1378
BstMWI GCNNNNNNNGC 4 cut(s) 76, 480, 830, 1066
BstNI CCWGG 2 cut(s) 304, 996
BstSCI CCNGG 2 cut(s) 302, 994
BstSFI CTRYAG 1 cut(s) 577
BstUI CGCG 1 cut(s) 954
BstV1I GCAGC 5 cut(s) 188, 391, 472, 591, 1036
BstV2I GAAGAC 1 cut(s) 810
BstX2I RGATCY 2 cut(s) 82, 903
BstYI RGATCY 2 cut(s) 82, 903
BsuRI GGCC 4 cut(s) 210, 220, 230, 389
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 3 cut(s) 928, 984, 1005
Cac8I GCNNGC 4 cut(s) 330, 577, 1071, 1152
Cfr13I GGNCC 3 cut(s) 209, 228, 935
CseI GACGC 2 cut(s) 76, 176
Csp6I GTAC 5 cut(s) 91, 558, 919, 929, 1257
CviAII CATG 5 cut(s) 61, 103, 397, 1088, 1216
CviQI GTAC 5 cut(s) 91, 558, 919, 929, 1257
DdeI CTNAG 5 cut(s) 527, 624, 686, 1008, 1043
DpnI GATC 6 cut(s) 84, 169, 768, 905, 1338, 1380
DpnII GATC 6 cut(s) 82, 167, 766, 903, 1336, 1378
DraIII CACNNNGTG 1 cut(s) 916
Eam1104I CTCTTC 3 cut(s) 503, 1128, 1311
EarI CTCTTC 3 cut(s) 503, 1128, 1311
Eco130I CCWWGG 1 cut(s) 563
Eco147I AGGCCT 2 cut(s) 220, 389
Eco47I GGWCC 1 cut(s) 935
Eco57I CTGAAG 2 cut(s) 275, 1152
EcoO109I RGGNCCY 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 302, 994
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 5 cut(s) 64, 106, 400, 1091, 1219
FaqI GGGAC 1 cut(s) 253
FatI CATG 5 cut(s) 60, 102, 396, 1087, 1215
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 1 cut(s) 1336
Fnu4HI GCNGC 6 cut(s) 177, 231, 405, 461, 580, 1050
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 6 cut(s) 177, 231, 405, 461, 580, 1050
FspBI CTAG 4 cut(s) 80, 222, 312, 588
GluI GCNGC 6 cut(s) 177, 231, 405, 461, 580, 1050
HaeIII GGCC 4 cut(s) 210, 220, 230, 389
HapII CCGG 1 cut(s) 907
HgaI GACGC 2 cut(s) 76, 176
Hin1II CATG 5 cut(s) 64, 106, 400, 1091, 1219
HinfI GANTC 8 cut(s) 338, 477, 525, 694, 827, 949, 1190, 1285
HpaII CCGG 1 cut(s) 907
HphI GGTGA 3 cut(s) 121, 1277, 1353
Hpy166II GTNNAC 3 cut(s) 595, 919, 1231
Hpy188I TCNGA 3 cut(s) 198, 1046, 1383
Hpy188III TCNNGA 8 cut(s) 352, 522, 529, 647, 764, 800, 938, 1340
Hpy8I GTNNAC 3 cut(s) 595, 919, 1231
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 673, 1201
HpyCH4III ACNGT 6 cut(s) 22, 244, 298, 814, 923, 1388
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 9 cut(s) 4, 56, 176, 284, 460, 579, 722, 1036, 1199
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 480, 830, 1066
HpyF3I CTNAG 5 cut(s) 527, 624, 686, 1008, 1043
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 5 cut(s) 64, 106, 400, 1091, 1219
Ksp22I TGATCA 1 cut(s) 1336
Kzo9I GATC 6 cut(s) 82, 167, 766, 903, 1336, 1378
LmnI GCTCC 4 cut(s) 438, 682, 766, 1057
Lsp1109I GCAGC 5 cut(s) 188, 391, 472, 591, 1036
LweI GCATC 5 cut(s) 174, 391, 717, 811, 1304
MaeI CTAG 4 cut(s) 80, 222, 312, 588
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 4 cut(s) 519, 695, 1003, 1156
MalI GATC 6 cut(s) 84, 169, 768, 905, 1338, 1380
MboI GATC 6 cut(s) 82, 167, 766, 903, 1336, 1378
MboII GAAGA 8 cut(s) 340, 520, 815, 887, 1091, 1145, 1199, 1328
MflI RGATCY 2 cut(s) 82, 903
MluCI AATT 6 cut(s) 112, 154, 376, 491, 980, 1365
MlyI GAGTC 5 cut(s) 347, 486, 519, 703, 836
MseI TTAA 4 cut(s) 261, 420, 863, 1106
MslI CAYNNNNRTG 4 cut(s) 107, 588, 702, 798
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 907
MspR9I CCNGG 2 cut(s) 304, 996
MvaI CCWGG 2 cut(s) 304, 996
MvnI CGCG 1 cut(s) 954
MwoI GCNNNNNNNGC 4 cut(s) 76, 480, 830, 1066
NdeI CATATG 1 cut(s) 664
NdeII GATC 6 cut(s) 82, 167, 766, 903, 1336, 1378
NlaIII CATG 5 cut(s) 64, 106, 400, 1091, 1219
NmeAIII GCCGAG 2 cut(s) 500, 850
NmuCI GTSAC 3 cut(s) 519, 695, 1003
OliI CACNNNNGTG 1 cut(s) 588
PceI AGGCCT 2 cut(s) 220, 389
PcsI WCGNNNNNNNCGW 2 cut(s) 350, 1152
PfeI GAWTC 3 cut(s) 949, 1190, 1285
PfoI TCCNGGA 1 cut(s) 994
PkrI GCNGC 6 cut(s) 178, 232, 406, 462, 581, 1051
PleI GAGTC 5 cut(s) 346, 485, 519, 702, 835
PpsI GAGTC 5 cut(s) 346, 485, 519, 702, 835
PsiI TTATAA 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 302, 994
PspGI CCWGG 2 cut(s) 302, 994
PspPI GGNCC 3 cut(s) 209, 228, 935
PstI CTGCAG 1 cut(s) 581
PsuI RGATCY 2 cut(s) 82, 903
RsaI GTAC 5 cut(s) 92, 559, 920, 930, 1258
RsaNI GTAC 5 cut(s) 91, 558, 919, 929, 1257
RseI CAYNNNNRTG 4 cut(s) 107, 588, 702, 798
SaqAI TTAA 4 cut(s) 261, 420, 863, 1106
SatI GCNGC 6 cut(s) 177, 231, 405, 461, 580, 1050
Sau3AI GATC 6 cut(s) 82, 167, 766, 903, 1336, 1378
Sau96I GGNCC 3 cut(s) 209, 228, 935
ScaI AGTACT 1 cut(s) 1258
SchI GAGTC 5 cut(s) 347, 486, 519, 703, 836
ScrFI CCNGG 2 cut(s) 304, 996
SfaNI GCATC 5 cut(s) 174, 391, 717, 811, 1304
SfcI CTRYAG 1 cut(s) 577
SinI GGWCC 1 cut(s) 935
SmiMI CAYNNNNRTG 4 cut(s) 107, 588, 702, 798
Sse9I AATT 6 cut(s) 112, 154, 376, 491, 980, 1365
SseBI AGGCCT 2 cut(s) 220, 389
SsiI CCGC 3 cut(s) 77, 134, 231
SspMI CTAG 4 cut(s) 80, 222, 312, 588
StuI AGGCCT 2 cut(s) 220, 389
StyD4I CCNGG 2 cut(s) 302, 994
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 6 cut(s) 22, 244, 298, 814, 923, 1388
TaiI ACGT 1 cut(s) 655
TaqI TCGA 3 cut(s) 170, 190, 692
TasI AATT 6 cut(s) 112, 154, 376, 491, 980, 1365
TatI WGTACW 3 cut(s) 918, 928, 1256
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 3 cut(s) 949, 1190, 1285
Tru1I TTAA 4 cut(s) 261, 420, 863, 1106
Tru9I TTAA 4 cut(s) 261, 420, 863, 1106
TscAI CASTG 3 cut(s) 928, 991, 1012
TseFI GTSAC 3 cut(s) 519, 695, 1003
TseI GCWGC 5 cut(s) 176, 404, 460, 579, 1049
Tsp45I GTSAC 3 cut(s) 519, 695, 1003
TspDTI ATGAA 9 cut(s) 137, 750, 756, 888, 1182, 1220, 1232, 1235, 1329
TspGWI ACGGA 2 cut(s) 45, 822
TspRI CASTG 3 cut(s) 928, 991, 1012
VpaK11BI GGWCC 1 cut(s) 935
XapI RAATTY 2 cut(s) 112, 376
XspI CTAG 4 cut(s) 80, 222, 312, 588
ZrmI AGTACT 1 cut(s) 1258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.