Rmu_sc0014815.1_g000013

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014815.1
OG0000572
Physical Location & Seq
Forward (+)
27933 .. 28906
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014815.1_g000013.1.cds

Sequence Viewer

Length: 702 bp
atgtttgggggatatcaaaatgagaagagcgattacaccgtaccaccaagtcggaaggccggaggcagagaaggggagaggatgggatctatcacctcaaggtttctcttgaagatctctacaccggcacaaccagaaagcttgctgtcactcgcaactctccaccaagtgcaagggcaaaggcaaacgcagtactactgctatgagtgcaagggcactggccagaccattcgtgccaaggaccgctgccagcagtgcaagggtgacaaggttgtgctggagaagaaaatattggaagtccacgtggagataggaatgaaaatcgggcagaagatcatattccctggcgaagctcatgaagggcctaatacccataggcagcttttgattaagtctcaacctggagaagttgtcaaccctaatcagtgcaaagctatacatgatgaaggcatgccaatatactcgaatccatttattaagggcaagttgtttgttcagttcactgttaagtacccaaattccttgagcccagaactgtgcaaggcactggaggctgagctagacgaatgcgatgagactacgctgtatgatgtgaacatggaggacgaaatgcgaaaaaagaaagcaaatcagtctcaagaggcatatgaggaagatgaggacatgcatggtgatgccagtgtccaatgcgctcatcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

233

Amino Acids

26.27

Weight (kDa)

5.85

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 244
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 517
AcvI CACGTG 1 cut(s) 304
AdeI CACNNNGTG 1 cut(s) 169
AfaI GTAC 3 cut(s) 42, 194, 512
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 2 cut(s) 343, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 5 cut(s) 141, 353, 382, 434, 559
AluI AGCT 5 cut(s) 141, 353, 382, 434, 559
Alw26I GTCTC 3 cut(s) 399, 569, 639
AlwI GGATC 1 cut(s) 94
AoxI GGCC 3 cut(s) 57, 220, 362
ApeKI GCWGC 2 cut(s) 246, 379
ApoI RAATTY 1 cut(s) 517
AspLEI GCGC 1 cut(s) 692
AspS9I GGNCC 2 cut(s) 241, 362
AsuHPI GGTGA 3 cut(s) 85, 275, 683
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 222
BanII GRGCYC 1 cut(s) 530
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbrPI CACGTG 1 cut(s) 304
BbvI GCAGC 2 cut(s) 233, 391
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 2 cut(s) 345, 402
BcoDI GTCTC 3 cut(s) 399, 569, 639
BfaI CTAG 1 cut(s) 560
BglII AGATCT 1 cut(s) 114
BisI GCNGC 2 cut(s) 247, 380
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 2 cut(s) 248, 381
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 345, 402
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 241, 362
BmrFI CCNGG 2 cut(s) 345, 402
BmsI GCATC 1 cut(s) 664
BpmI CTGGAG 3 cut(s) 299, 423, 569
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 3 cut(s) 82, 544, 621
BsaAI YACGTR 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 237, 343
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 3 cut(s) 223, 552, 678
BseBI CCWGG 2 cut(s) 345, 402
BseDI CCNNGG 2 cut(s) 237, 343
BseGI GGATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 3 cut(s) 223, 552, 678
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 2 cut(s) 233, 391
BshFI GGCC 3 cut(s) 59, 222, 364
BsiSI CCGG 2 cut(s) 60, 125
BsmAI GTCTC 3 cut(s) 399, 569, 639
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 3 cut(s) 59, 222, 364
Bsp1286I GDGCHC 2 cut(s) 218, 530
Bsp143I GATC 3 cut(s) 86, 114, 333
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 1 cut(s) 244
BspANI GGCC 3 cut(s) 59, 222, 364
BspCNI CTCAG 1 cut(s) 547
BspHI TCATGA 1 cut(s) 355
BspPI GGATC 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 3 cut(s) 223, 552, 678
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 237, 343
BssMI GATC 3 cut(s) 86, 114, 333
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 345, 402
Bst4CI ACNGT 3 cut(s) 40, 505, 537
Bst6I CTCTTC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 3 cut(s) 143, 251, 452
BstDEI CTNAG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 3 cut(s) 89, 117, 336
BstMAI GTCTC 3 cut(s) 399, 569, 639
BstMBI GATC 3 cut(s) 86, 114, 333
BstMWI GCNNNNNNNGC 3 cut(s) 207, 255, 551
BstNI CCWGG 2 cut(s) 345, 402
BstNSI RCATGY 2 cut(s) 454, 667
BstSCI CCNGG 2 cut(s) 343, 400
BstSLI GKGCMC 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 233, 391
BstX2I RGATCY 2 cut(s) 86, 114
BstYI RGATCY 2 cut(s) 86, 114
BsuRI GGCC 3 cut(s) 59, 222, 364
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 6 cut(s) 216, 260, 431, 501, 545, 685
Cac8I GCNNGC 3 cut(s) 143, 251, 452
CciI TCATGA 1 cut(s) 355
CfoI GCGC 1 cut(s) 692
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 241, 362
Csp6I GTAC 3 cut(s) 41, 193, 511
CviAII CATG 6 cut(s) 356, 440, 451, 598, 664, 668
CviQI GTAC 3 cut(s) 41, 193, 511
DdeI CTNAG 1 cut(s) 555
DpnI GATC 3 cut(s) 88, 116, 335
DpnII GATC 3 cut(s) 86, 114, 333
DraIII CACNNNGTG 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 530
Eco32I GATATC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 241
Eco72I CACGTG 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 343, 400
EcoRV GATATC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 6 cut(s) 359, 443, 454, 601, 667, 671
FatI CATG 6 cut(s) 355, 439, 450, 597, 663, 667
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 2 cut(s) 247, 380
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 2 cut(s) 247, 380
FspBI CTAG 1 cut(s) 560
GlaI GCGC 1 cut(s) 691
GluI GCNGC 2 cut(s) 247, 380
GsuI CTGGAG 3 cut(s) 299, 423, 569
HaeIII GGCC 3 cut(s) 59, 222, 364
HapII CCGG 2 cut(s) 60, 125
HhaI GCGC 1 cut(s) 692
Hin1II CATG 6 cut(s) 359, 443, 454, 601, 667, 671
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 1 cut(s) 466
HpaII CCGG 2 cut(s) 60, 125
HphI GGTGA 3 cut(s) 85, 275, 683
Hpy166II GTNNAC 4 cut(s) 301, 415, 501, 595
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 3 cut(s) 109, 356, 638
Hpy8I GTNNAC 4 cut(s) 301, 415, 501, 595
HpyAV CCTTC 4 cut(s) 49, 65, 353, 440
HpyCH4III ACNGT 3 cut(s) 40, 505, 537
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 6 cut(s) 172, 210, 258, 429, 540, 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 255, 551
HpyF3I CTNAG 1 cut(s) 555
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 6 cut(s) 359, 443, 454, 601, 667, 671
HspAI GCGC 1 cut(s) 690
Kzo9I GATC 3 cut(s) 86, 114, 333
LguI GCTCTTC 1 cut(s) 20
Lsp1109I GCAGC 2 cut(s) 233, 391
LweI GCATC 1 cut(s) 664
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 147, 263
MalI GATC 3 cut(s) 88, 116, 335
MboI GATC 3 cut(s) 86, 114, 333
MboII GAAGA 5 cut(s) 37, 124, 295, 343, 665
MflI RGATCY 2 cut(s) 86, 114
MhlI GDGCHC 2 cut(s) 218, 530
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 1 cut(s) 517
MluNI TGGCCA 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 8 cut(s) 56, 72, 106, 544, 595, 634, 643, 652
Mox20I TGGCCA 1 cut(s) 222
Mph1103I ATGCAT 1 cut(s) 669
MscI TGGCCA 1 cut(s) 222
MseI TTAA 3 cut(s) 390, 477, 507
MslI CAYNNNNRTG 1 cut(s) 672
Msp20I TGGCCA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 2 cut(s) 60, 125
MspR9I CCNGG 2 cut(s) 345, 402
Mva1269I GAATGC 1 cut(s) 572
MvaI CCWGG 2 cut(s) 345, 402
MwoI GCNNNNNNNGC 3 cut(s) 207, 255, 551
NdeI CATATG 1 cut(s) 646
NdeII GATC 3 cut(s) 86, 114, 333
NlaIII CATG 6 cut(s) 359, 443, 454, 601, 667, 671
NmuCI GTSAC 2 cut(s) 147, 263
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 2 cut(s) 454, 667
PaeI GCATGC 1 cut(s) 454
PagI TCATGA 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 20
PctI GAATGC 1 cut(s) 572
PfeI GAWTC 1 cut(s) 466
PkrI GCNGC 2 cut(s) 248, 381
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
Ppu21I YACGTR 1 cut(s) 304
Psp6I CCWGG 2 cut(s) 343, 400
PspCI CACGTG 1 cut(s) 304
PspGI CCWGG 2 cut(s) 343, 400
PspPI GGNCC 2 cut(s) 241, 362
PsuI RGATCY 2 cut(s) 86, 114
RsaI GTAC 3 cut(s) 42, 194, 512
RsaNI GTAC 3 cut(s) 41, 193, 511
RseI CAYNNNNRTG 1 cut(s) 672
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 390, 477, 507
SatI GCNGC 2 cut(s) 247, 380
Sau3AI GATC 3 cut(s) 86, 114, 333
Sau96I GGNCC 2 cut(s) 241, 362
ScaI AGTACT 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 345, 402
SduI GDGCHC 2 cut(s) 218, 530
SfaNI GCATC 1 cut(s) 664
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 3 cut(s) 97, 523, 636
SmoI CTYRAG 3 cut(s) 97, 523, 636
SphI GCATGC 1 cut(s) 454
Sse9I AATT 1 cut(s) 517
SsiI CCGC 1 cut(s) 244
SspI AATATT 1 cut(s) 291
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 2 cut(s) 343, 400
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 3 cut(s) 40, 505, 537
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 464
TasI AATT 1 cut(s) 517
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 3 cut(s) 390, 477, 507
Tru9I TTAA 3 cut(s) 390, 477, 507
TscAI CASTG 6 cut(s) 223, 260, 431, 508, 552, 685
TseFI GTSAC 2 cut(s) 147, 263
TseI GCWGC 2 cut(s) 246, 379
Tsp45I GTSAC 2 cut(s) 147, 263
TspDTI ATGAA 3 cut(s) 332, 372, 459
TspRI CASTG 6 cut(s) 223, 260, 431, 508, 552, 685
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 517
XceI RCATGY 2 cut(s) 454, 667
XspI CTAG 1 cut(s) 560
ZrmI AGTACT 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.