Rorug05G0242200

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000572
Physical Location & Seq
Reverse (-)
25842074 .. 25844759
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0242200.1

Sequence Viewer

Length: 684 bp
ATGCACTCGTTGAGTTCTGGTATCAACGTGAAAGAGAGTGGTGACATTTTATCACTCGAGGAGAAATTTCAAGTATTCCAAAAAAAAAAAAAAATTGTAGATGGTCAAGTGAAAGATTTATTATATAAATCAGATTACCAAAACATCAAGTATTACCAAATACAAAGTCAAGCAGCTAAGCCTAGTAAATATTGGACTCTGCCGCCAACTCAAAAGCCTAAAATCAATGTTGATGGAGCTTTCCTACCCTCTAAGCATATTGGGGGTATAGGTGGAGTTATAAGACGAGAGGATGGCTCTTTTGTTGCTGGCTTTTCTCAGTCCCTTCAATATGTGCAGTCTCCAAAGCAGGTGGAGTTGTTAGCCATTAGAGCTGGAATTGACTTACTGCTGCAACTCAGATTAGAGAACGTCTATGTGGAAAGTGACTGCCAGATTTCCATCCAAGAGGTTGGTGCAAATGATTTTGAGTTAAATGAAAATGCCAACCTACTTGCTGATATACACCATGGTAGTAAACTTGTTAAAGATCTGTTTTTCTTGTTTGCTCCTAGAACTGCCAATATAGTGGCACATAGATTAGCTGCTTTTGGCTATGAATCCAATACCAATCAAGTATGGATTGATCAAGCTCCAACACTTATTCTGAATGCTTTACAGTTTGATTGTAATCATTTACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

227

Amino Acids

25.45

Weight (kDa)

6.59

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 76 - 197 3.7e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AarI CACCTGC 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 340
AciI CCGC 1 cut(s) 203
AcsI RAATTY 1 cut(s) 65
AgsI TTSAA 2 cut(s) 71, 329
AluBI AGCT 5 cut(s) 176, 239, 374, 584, 632
AluI AGCT 5 cut(s) 176, 239, 374, 584, 632
Alw26I GTCTC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 173, 391, 584
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
AsuHPI GGTGA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 56
BbvI GCAGC 3 cut(s) 185, 378, 571
BccI CCATC 4 cut(s) 95, 227, 287, 449
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 2 cut(s) 183, 552
BfuAI ACCTGC 1 cut(s) 340
BglII AGATCT 1 cut(s) 529
BisI GCNGC 4 cut(s) 174, 203, 392, 585
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 4 cut(s) 175, 204, 393, 586
BmeT110I CYCGRG 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu1102I GCTNAGC 1 cut(s) 177
BsaBI GATNNNNATC 2 cut(s) 440, 669
BsaJI CCNNGG 1 cut(s) 508
Bse8I GATNNNNATC 2 cut(s) 440, 669
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 2 cut(s) 298, 441
BseJI GATNNNNATC 2 cut(s) 440, 669
BseMII CTCAG 2 cut(s) 332, 412
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 185, 378, 571
BsgI GTGCAG 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 655
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 2 cut(s) 529, 625
Bsp1720I GCTNAGC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 331, 411
BspMI ACCTGC 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 2 cut(s) 529, 625
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 1 cut(s) 660
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 177, 252, 318, 398
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 298, 441
BstKTI GATC 2 cut(s) 532, 628
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 2 cut(s) 529, 625
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 185, 378, 571
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 2 cut(s) 452, 568
BstYI RGATCY 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 2 cut(s) 298, 441
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 310
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 1 cut(s) 509
DdeI CTNAG 4 cut(s) 177, 252, 318, 398
DpnI GATC 2 cut(s) 531, 627
DpnII GATC 2 cut(s) 529, 625
Eco130I CCWWGG 1 cut(s) 508
Eco88I CYCGRG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 1 cut(s) 512
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 508
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 4 cut(s) 174, 203, 392, 585
FokI GGATG 2 cut(s) 305, 428
Fsp4HI GCNGC 4 cut(s) 174, 203, 392, 585
FspBI CTAG 2 cut(s) 183, 552
GluI GCNGC 4 cut(s) 174, 203, 392, 585
Hin1II CATG 1 cut(s) 512
HinfI GANTC 2 cut(s) 196, 599
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 3 cut(s) 133, 401, 648
Hpy8I GTNNAC 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 660
HpyCH4IV ACGT 2 cut(s) 27, 411
HpyCH4V TGCA 4 cut(s) 4, 337, 394, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 4 cut(s) 177, 252, 318, 398
HpySE526I ACGT 2 cut(s) 27, 411
Hsp92II CATG 1 cut(s) 512
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 2 cut(s) 529, 625
LmnI GCTCC 3 cut(s) 236, 553, 637
LpnPI CCDG 5 cut(s) 3, 294, 335, 360, 446
Lsp1109I GCAGC 3 cut(s) 185, 378, 571
MaeI CTAG 2 cut(s) 183, 552
MaeII ACGT 2 cut(s) 27, 411
MaeIII GTNAC 2 cut(s) 41, 425
MalI GATC 2 cut(s) 531, 627
MboI GATC 2 cut(s) 529, 625
MflI RGATCY 1 cut(s) 529
MluCI AATT 3 cut(s) 65, 93, 378
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 659
MnlI CCTC 4 cut(s) 52, 259, 283, 442
MseI TTAA 2 cut(s) 473, 525
Mva1269I GAATGC 1 cut(s) 655
MwoI GCNNNNNNNGC 1 cut(s) 371
NcoI CCATGG 1 cut(s) 508
NdeII GATC 2 cut(s) 529, 625
NlaIII CATG 1 cut(s) 512
NmuCI GTSAC 2 cut(s) 41, 425
PaeR7I CTCGAG 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 340
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 4 cut(s) 175, 204, 393, 586
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PsiI TTATAA 1 cut(s) 281
PspXI VCTCGAGB 1 cut(s) 56
PsuI RGATCY 1 cut(s) 529
SaqAI TTAA 2 cut(s) 473, 525
SatI GCNGC 4 cut(s) 174, 203, 392, 585
Sau3AI GATC 2 cut(s) 529, 625
SchI GAGTC 1 cut(s) 190
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 3 cut(s) 65, 93, 378
SsiI CCGC 1 cut(s) 203
SspI AATATT 1 cut(s) 191
SspMI CTAG 2 cut(s) 183, 552
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 660
TaiI ACGT 2 cut(s) 30, 414
TaqI TCGA 1 cut(s) 57
TasI AATT 3 cut(s) 65, 93, 378
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 2 cut(s) 473, 525
Tru9I TTAA 2 cut(s) 473, 525
TseFI GTSAC 2 cut(s) 41, 425
TseI GCWGC 3 cut(s) 173, 391, 584
Tsp45I GTSAC 2 cut(s) 41, 425
TspDTI ATGAA 2 cut(s) 492, 612
XapI RAATTY 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 2 cut(s) 183, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.