Rmu_sc0008629.1_g000009

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008629.1
OG0000572
Physical Location & Seq
Forward (+)
31794 .. 32739
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008629.1_g000009.1.cds

Sequence Viewer

Length: 684 bp
atgagaagagcgattacaccaccaagtcggaaggccggaggcagagaaggggagaggatgggatctatcacctcaaggtttctcttgaagatctctacaccggcacaaccagaaagcttgttgtcactcgcaataagatctgcaccaagtgcaagggcaaagggtcaaagtcaggtgcttcaaggacgtgccgtggttgccaagggcatgaccattcgtgccaaggaccgctgccagcagtgcaagggtgacaaggttgtgctggagaagaaaatattggaagtccacgtggagataggaatgaaaaacaggcagaagatcatattccctggcgaagctcacgaagggcctaataccatcacatgtaatattgttattcttctgattaagtctcaatctggagaagttgtcaaccctaatcagtgcaaagatatacatgataaaggcatgccaatagactcgaatccatttattaagggcaagttgtatgttcagttcactgtgaagtacccaaattccttgagcccagaactgtgcaaggcactggaggctgagctagacgaatgcgatgagactacgctgtatgatgtgaacatggaggacgaaatgccaaaaaagaaagcaaataagtctcaagaggcatatgaggaagatgaggacatgcatggtgatgccggtgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

227

Amino Acids

25.11

Weight (kDa)

8.15

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 514
AcvI CACGTG 1 cut(s) 289
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 2 cut(s) 88, 182
AjiI CACGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 117, 338, 556
AluI AGCT 3 cut(s) 117, 338, 556
Alw26I GTCTC 3 cut(s) 396, 566, 636
AlwI GGATC 1 cut(s) 70
AoxI GGCC 2 cut(s) 33, 347
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 514
AspS9I GGNCC 2 cut(s) 226, 347
AsuHPI GGTGA 3 cut(s) 61, 260, 680
AvaII GGWCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 527
BarI GAAGNNNNNNTAC 1 cut(s) 30
BbrPI CACGTG 1 cut(s) 289
BbvI GCAGC 1 cut(s) 218
BccI CCATC 2 cut(s) 52, 365
BceAI ACGGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 330
BcoDI GTCTC 3 cut(s) 396, 566, 636
BfaI CTAG 1 cut(s) 557
BglII AGATCT 2 cut(s) 90, 137
BisI GCNGC 1 cut(s) 232
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 226, 347
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 661
BpmI CTGGAG 3 cut(s) 284, 420, 566
Bpu1102I GCTNAGC 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 58, 541, 618
BsaAI YACGTR 1 cut(s) 289
BsaJI CCNNGG 4 cut(s) 192, 201, 222, 328
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bse118I RCCGGY 2 cut(s) 100, 674
Bse1I ACTGG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 4 cut(s) 192, 201, 222, 328
BseGI GGATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 549
BseXI GCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 2 cut(s) 35, 349
BsiSI CCGG 3 cut(s) 36, 101, 675
BsmAI GTCTC 3 cut(s) 396, 566, 636
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 2 cut(s) 35, 349
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 4 cut(s) 62, 90, 137, 318
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 35, 349
BspCNI CTCAG 1 cut(s) 544
BspPI GGATC 1 cut(s) 70
BsrFI RCCGGY 2 cut(s) 100, 674
BsrI ACTGG 1 cut(s) 549
BssAI RCCGGY 2 cut(s) 100, 674
BssECI CCNNGG 4 cut(s) 192, 201, 222, 328
BssMI GATC 4 cut(s) 62, 90, 137, 318
BssT1I CCWWGG 2 cut(s) 201, 222
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 502, 534
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 236, 449
BstDEI CTNAG 1 cut(s) 552
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 4 cut(s) 65, 93, 140, 321
BstMAI GTCTC 3 cut(s) 396, 566, 636
BstMBI GATC 4 cut(s) 62, 90, 137, 318
BstMWI GCNNNNNNNGC 4 cut(s) 149, 197, 240, 548
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 3 cut(s) 366, 451, 664
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 3 cut(s) 62, 90, 137
BstYI RGATCY 3 cut(s) 62, 90, 137
BsuRI GGCC 2 cut(s) 35, 349
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 582
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 4 cut(s) 245, 428, 498, 542
Cac8I GCNNGC 2 cut(s) 236, 449
Cfr10I RCCGGY 2 cut(s) 100, 674
Cfr13I GGNCC 2 cut(s) 226, 347
Csp6I GTAC 1 cut(s) 508
CviAII CATG 7 cut(s) 208, 363, 437, 448, 595, 661, 665
CviJI RGCY 7 cut(s) 35, 117, 338, 349, 525, 551, 556
CviKI_1 RGCY 7 cut(s) 35, 117, 338, 349, 525, 551, 556
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 1 cut(s) 552
DpnI GATC 4 cut(s) 64, 92, 139, 320
DpnII GATC 4 cut(s) 62, 90, 137, 318
DraIII CACNNNGTG 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 201, 222
Eco24I GRGCYC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 226
Eco72I CACGTG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 201, 222
EcoT22I ATGCAT 1 cut(s) 666
EcoT38I GRGCYC 1 cut(s) 527
ErhI CCWWGG 2 cut(s) 201, 222
FaeI CATG 7 cut(s) 211, 366, 440, 451, 598, 664, 668
FatI CATG 7 cut(s) 207, 362, 436, 447, 594, 660, 664
FauNDI CATATG 1 cut(s) 643
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 557
GluI GCNGC 1 cut(s) 232
GsuI CTGGAG 3 cut(s) 284, 420, 566
HaeIII GGCC 2 cut(s) 35, 349
HapII CCGG 3 cut(s) 36, 101, 675
Hin1II CATG 7 cut(s) 211, 366, 440, 451, 598, 664, 668
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 2 cut(s) 458, 463
HpaII CCGG 3 cut(s) 36, 101, 675
HphI GGTGA 3 cut(s) 61, 260, 680
Hpy166II GTNNAC 4 cut(s) 286, 412, 498, 592
Hpy188I TCNGA 2 cut(s) 30, 384
Hpy188III TCNNGA 4 cut(s) 85, 341, 399, 635
Hpy8I GTNNAC 4 cut(s) 286, 412, 498, 592
HpyAV CCTTC 3 cut(s) 25, 41, 338
HpyCH4III ACNGT 2 cut(s) 502, 534
HpyCH4IV ACGT 2 cut(s) 187, 288
HpyCH4V TGCA 6 cut(s) 143, 152, 243, 426, 537, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 197, 240, 548
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 2 cut(s) 187, 288
Hsp92II CATG 7 cut(s) 211, 366, 440, 451, 598, 664, 668
Kzo9I GATC 4 cut(s) 62, 90, 137, 318
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 661
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 187, 288
MaeIII GTNAC 2 cut(s) 123, 248
MalI GATC 4 cut(s) 64, 92, 139, 320
MboI GATC 4 cut(s) 62, 90, 137, 318
MboII GAAGA 6 cut(s) 18, 100, 280, 328, 371, 662
MflI RGATCY 3 cut(s) 62, 90, 137
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 1 cut(s) 514
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 8 cut(s) 32, 48, 82, 541, 592, 631, 640, 649
Mph1103I ATGCAT 1 cut(s) 666
MseI TTAA 2 cut(s) 387, 474
MslI CAYNNNNRTG 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 3 cut(s) 36, 101, 675
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 4 cut(s) 149, 197, 240, 548
NdeI CATATG 1 cut(s) 643
NdeII GATC 4 cut(s) 62, 90, 137, 318
NlaIII CATG 7 cut(s) 211, 366, 440, 451, 598, 664, 668
NmuCI GTSAC 2 cut(s) 123, 248
NsiI ATGCAT 1 cut(s) 666
NspI RCATGY 3 cut(s) 366, 451, 664
PaeI GCATGC 1 cut(s) 451
PciI ACATGT 1 cut(s) 362
PctI GAATGC 1 cut(s) 569
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 1 cut(s) 452
PmaCI CACGTG 1 cut(s) 289
PmlI CACGTG 1 cut(s) 289
PpsI GAGTC 1 cut(s) 452
Ppu21I YACGTR 1 cut(s) 289
PscI ACATGT 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 328
PspCI CACGTG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 328
PspPI GGNCC 2 cut(s) 226, 347
PsrI GAACNNNNNNTAC 2 cut(s) 479, 511
PsuI RGATCY 3 cut(s) 62, 90, 137
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 669
SaqAI TTAA 2 cut(s) 387, 474
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 4 cut(s) 62, 90, 137, 318
Sau96I GGNCC 2 cut(s) 226, 347
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 1 cut(s) 527
SetI ASST 9 cut(s) 74, 80, 119, 177, 190, 258, 291, 340, 558
SfaNI GCATC 1 cut(s) 661
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 3 cut(s) 73, 520, 633
SmoI CTYRAG 3 cut(s) 73, 520, 633
SphI GCATGC 1 cut(s) 451
Sse9I AATT 1 cut(s) 514
SsiI CCGC 1 cut(s) 229
SspI AATATT 2 cut(s) 276, 370
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 2 cut(s) 201, 222
TaaI ACNGT 2 cut(s) 502, 534
TaiI ACGT 2 cut(s) 190, 291
TaqI TCGA 1 cut(s) 461
TasI AATT 1 cut(s) 514
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 2 cut(s) 387, 474
Tru9I TTAA 2 cut(s) 387, 474
TscAI CASTG 4 cut(s) 245, 428, 505, 549
TseFI GTSAC 2 cut(s) 123, 248
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 2 cut(s) 123, 248
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 4 cut(s) 245, 428, 505, 549
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 514
XceI RCATGY 3 cut(s) 366, 451, 664
XspI CTAG 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.