Rw6G018630

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000572
Physical Location & Seq
Forward (+)
36994227 .. 36996785
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018630.1

Sequence Viewer

Length: 789 bp
ATGACCGTGTCAAATTCAGAGAAGCGAAGATCTTTCCATTCTGCTTCTGTATTCGGAAGTATGGAGTCACGAACATTGCCATATCTTCACTCATTGAAGGTCTCTTTAGAAGACCTATATCTTGGAACCTCAAAGAAACTCTCCCTATCTCGCAATGTGTTGTGCTCCAACCTTGACCAACTGTGGTGGTTACGTTTCCAAGGAACTGGTATGGAGGTCACTATTAGGCATCTTAGACCTTCTATGATTCAACAGATTTACCATGCTAGCAATAAACATAAGGGTACTGGAGAGACCATCAGTGACAAGGATTGCTGTGGACAGTGCAAGGGAGAGAAAGTTGTTCAAGAAAAGAAAGTTTTAGAAGTCCATATGGAGAAGGATATGCAGAATGGACAGAAGATTGCATTCCCTGGTGAAGTTGATGTAGCTCTACATGTTTCATCACTGTTGATTTGTGCTGAACCATTTGGATGGCAGGCAGCTATACTTATCAAATCCGACCATGGTGAAGTTGTGAAGCCTGATTCGCCATTCATGAAGCGTAAGCTGTACATCCAATTCTCAGTGGACTTCCCTGAAACTCTAAGCCTCAAACAGATCAAGACTTTGGAAGCTGCTCTTCCATCAAGCTTAGATGAGTGTGAGGAGACGACTCTGCATGATGTGAACGGAGGAGAAGATGAGGAGGAAATTACAGCACTAGGCTCATTCGGAGGAGGCGAGGCGTGTGAGGAGGACGACGACATGCCTGGTGGTGCACATAGGGTGCAATGTGCACAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

262

Amino Acids

29.15

Weight (kDa)

5.4

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 30 - 142 2.8e-08 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 2 cut(s) 286, 554
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 3 cut(s) 97, 251, 347
AjnI CCWGG 2 cut(s) 412, 751
AleI CACNNNNGTG 1 cut(s) 784
AluBI AGCT 5 cut(s) 431, 485, 550, 617, 633
AluI AGCT 5 cut(s) 431, 485, 550, 617, 633
Alw21I GWGCWC 3 cut(s) 167, 763, 781
Alw26I GTCTC 3 cut(s) 106, 287, 644
Alw44I GTGCAC 2 cut(s) 759, 777
ApaLI GTGCAC 2 cut(s) 759, 777
ApeKI GCWGC 2 cut(s) 482, 617
ApoI RAATTY 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 428, 521
AsuNHI GCTAGC 1 cut(s) 266
BaeGI GKGCMC 2 cut(s) 763, 781
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 3 cut(s) 167, 763, 781
BbvI GCAGC 2 cut(s) 494, 604
BccI CCATC 3 cut(s) 305, 468, 634
BciT130I CCWGG 2 cut(s) 414, 753
BcoDI GTCTC 3 cut(s) 106, 287, 644
BfaI CTAG 2 cut(s) 267, 704
BglII AGATCT 1 cut(s) 29
BisI GCNGC 2 cut(s) 483, 618
BlsI GCNGC 2 cut(s) 484, 619
Bme1390I CCNGG 2 cut(s) 414, 753
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 414, 753
BmsI GCATC 1 cut(s) 238
BmtI GCTAGC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 106, 287
BsaJI CCNNGG 3 cut(s) 199, 412, 505
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bse1I ACTGG 2 cut(s) 211, 292
Bse3DI GCAATG 3 cut(s) 74, 160, 779
BseBI CCWGG 2 cut(s) 414, 753
BseDI CCNNGG 3 cut(s) 199, 412, 505
BseGI GGATG 2 cut(s) 479, 555
BseMI GCAATG 3 cut(s) 74, 160, 779
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 211, 292
BseRI GAGGAG 5 cut(s) 662, 690, 701, 732, 749
BseSI GKGCMC 2 cut(s) 763, 781
BseXI GCAGC 2 cut(s) 494, 604
BsiHKAI GWGCWC 3 cut(s) 167, 763, 781
BsmAI GTCTC 3 cut(s) 106, 287, 644
BsmBI CGTCTC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 407
Bso31I GGTCTC 2 cut(s) 106, 287
Bsp1286I GDGCHC 3 cut(s) 167, 763, 781
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 2 cut(s) 29, 600
Bsp19I CCATGG 1 cut(s) 505
BspCNI CTCAG 1 cut(s) 578
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 1 cut(s) 127
BspOI GCTAGC 1 cut(s) 270
BspQI GCTCTTC 1 cut(s) 627
BspTNI GGTCTC 2 cut(s) 106, 287
BsrDI GCAATG 3 cut(s) 74, 160, 779
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 2 cut(s) 211, 292
BssECI CCNNGG 3 cut(s) 199, 412, 505
BssMI GATC 2 cut(s) 29, 600
BssT1I CCWWGG 2 cut(s) 199, 505
Bst2UI CCWGG 2 cut(s) 414, 753
Bst4CI ACNGT 5 cut(s) 7, 183, 324, 450, 786
Bst6I CTCTTC 1 cut(s) 627
BstAUI TGTACA 1 cut(s) 552
BstC8I GCNNGC 2 cut(s) 268, 480
BstDEI CTNAG 4 cut(s) 233, 565, 587, 634
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 2 cut(s) 479, 555
BstKTI GATC 2 cut(s) 32, 603
BstMAI GTCTC 3 cut(s) 106, 287, 644
BstMBI GATC 2 cut(s) 29, 600
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNI CCWGG 2 cut(s) 414, 753
BstNSI RCATGY 2 cut(s) 440, 751
BstSCI CCNGG 2 cut(s) 412, 751
BstSLI GKGCMC 2 cut(s) 763, 781
BstV1I GCAGC 2 cut(s) 494, 604
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 2 cut(s) 206, 474
BstYI RGATCY 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 505
BtsCI GGATG 2 cut(s) 479, 555
BtsIMutI CAGTG 4 cut(s) 307, 329, 446, 573
Cac8I GCNNGC 2 cut(s) 268, 480
CciI TCATGA 1 cut(s) 537
Csp6I GTAC 2 cut(s) 285, 553
CspCI CAANNNNNGTGG 2 cut(s) 167, 202
CviAII CATG 6 cut(s) 263, 437, 506, 538, 662, 748
CviJI RGCY 8 cut(s) 431, 485, 523, 550, 591, 617, 633, 708
CviKI_1 RGCY 8 cut(s) 431, 485, 523, 550, 591, 617, 633, 708
CviQI GTAC 2 cut(s) 285, 553
DdeI CTNAG 4 cut(s) 233, 565, 587, 634
DpnI GATC 2 cut(s) 31, 602
DpnII GATC 2 cut(s) 29, 600
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 199, 505
Eco31I GGTCTC 2 cut(s) 106, 287
EcoRII CCWGG 2 cut(s) 412, 751
EcoT14I CCWWGG 2 cut(s) 199, 505
ErhI CCWWGG 2 cut(s) 199, 505
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 6 cut(s) 266, 440, 509, 541, 665, 751
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FatI CATG 6 cut(s) 262, 436, 505, 537, 661, 747
FauNDI CATATG 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 483, 618
FokI GGATG 2 cut(s) 486, 542
Fsp4HI GCNGC 2 cut(s) 483, 618
FspBI CTAG 2 cut(s) 267, 704
GluI GCNGC 2 cut(s) 483, 618
GsuI CTGGAG 1 cut(s) 309
Hin1II CATG 6 cut(s) 266, 440, 509, 541, 665, 751
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 4 cut(s) 65, 247, 527, 655
HphI GGTGA 2 cut(s) 428, 521
Hpy166II GTNNAC 5 cut(s) 320, 571, 670, 761, 779
Hpy188I TCNGA 4 cut(s) 19, 56, 502, 716
Hpy188III TCNNGA 4 cut(s) 69, 347, 538, 604
Hpy8I GTNNAC 5 cut(s) 320, 571, 670, 761, 779
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 3 cut(s) 91, 249, 373
HpyCH4III ACNGT 5 cut(s) 7, 183, 324, 450, 786
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 7 cut(s) 327, 388, 407, 661, 761, 772, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 4 cut(s) 233, 565, 587, 634
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 6 cut(s) 266, 440, 509, 541, 665, 751
Kzo9I GATC 2 cut(s) 29, 600
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 192, 273, 399, 426, 464, 537, 591, 738, 765
Lsp1109I GCAGC 2 cut(s) 494, 604
LweI GCATC 1 cut(s) 238
MaeI CTAG 2 cut(s) 267, 704
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 4 cut(s) 66, 189, 217, 302
MalI GATC 2 cut(s) 31, 602
MboI GATC 2 cut(s) 29, 600
MboII GAAGA 6 cut(s) 39, 77, 122, 412, 614, 692
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 3 cut(s) 167, 763, 781
MluCI AATT 3 cut(s) 13, 560, 693
MlyI GAGTC 2 cut(s) 74, 649
MmeI TCCRAC 2 cut(s) 192, 525
MslI CAYNNNNRTG 2 cut(s) 472, 784
MspR9I CCNGG 2 cut(s) 414, 753
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 2 cut(s) 414, 753
MwoI GCNNNNNNNGC 1 cut(s) 529
NcoI CCATGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 372
NdeII GATC 2 cut(s) 29, 600
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 6 cut(s) 266, 440, 509, 541, 665, 751
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 3 cut(s) 66, 217, 302
NspI RCATGY 2 cut(s) 440, 751
OliI CACNNNNGTG 1 cut(s) 784
PagI TCATGA 1 cut(s) 537
PciI ACATGT 1 cut(s) 436
PciSI GCTCTTC 1 cut(s) 627
PcsI WCGNNNNNNNCGW 1 cut(s) 720
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 247, 527
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 484, 619
PleI GAGTC 2 cut(s) 73, 649
PpsI GAGTC 2 cut(s) 73, 649
PscI ACATGT 1 cut(s) 436
Psp6I CCWGG 2 cut(s) 412, 751
PspGI CCWGG 2 cut(s) 412, 751
PspN4I GGNNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 29
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 2 cut(s) 286, 554
RsaNI GTAC 2 cut(s) 285, 553
RseI CAYNNNNRTG 2 cut(s) 472, 784
SapI GCTCTTC 1 cut(s) 627
SatI GCNGC 2 cut(s) 483, 618
Sau3AI GATC 2 cut(s) 29, 600
SchI GAGTC 2 cut(s) 74, 649
ScrFI CCNGG 2 cut(s) 414, 753
SduI GDGCHC 3 cut(s) 167, 763, 781
SfaNI GCATC 1 cut(s) 238
SmiMI CAYNNNNRTG 2 cut(s) 472, 784
Sse9I AATT 3 cut(s) 13, 560, 693
SspMI CTAG 2 cut(s) 267, 704
StyD4I CCNGG 2 cut(s) 412, 751
StyI CCWWGG 2 cut(s) 199, 505
TaaI ACNGT 5 cut(s) 7, 183, 324, 450, 786
TaiI ACGT 1 cut(s) 196
TasI AATT 3 cut(s) 13, 560, 693
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 2 cut(s) 247, 527
TscAI CASTG 4 cut(s) 307, 329, 453, 573
TseFI GTSAC 3 cut(s) 66, 217, 302
TseI GCWGC 2 cut(s) 482, 617
Tsp45I GTSAC 3 cut(s) 66, 217, 302
TspDTI ATGAA 3 cut(s) 432, 526, 554
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 4 cut(s) 307, 329, 453, 573
Tth111I GACNNNGTC 1 cut(s) 7
VneI GTGCAC 2 cut(s) 759, 777
XapI RAATTY 1 cut(s) 13
XceI RCATGY 2 cut(s) 440, 751
XspI CTAG 2 cut(s) 267, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.