pycom03g11140

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000572
Physical Location & Seq
Forward (+)
10765632 .. 10767072
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11140.4

Sequence Viewer

Length: 1020 bp
ATGGGGGGTGGAGGTGGCGGCGGCCACGACCCATTTGACATCTTCTCATCTTTCTTTGGTGGAAGCCCATTTGGAGGTGGTGGTAGTAGCCGAGGACGAAGACAGAGACGTGGAGAAGATGTTGTCCATGCACTCAAGGTTTCTTTGGAGGACCTCTATCTTGGGACCTCGAAGAAGCTATCTTTATCGCGTAATGTGCTATGTTCCAAGTGTAACGGCAAGGGTTCGAAATCTGGGGCTTCATTGAAGTGTTCTGGCTGTCAAGGAACTGGTATGAAGGTCTCAATTAGGCACCTGGGCCCGTCTATGATTCAACAGATGCAGCATGCTTGCAATGAGTGTAAGGGTACTGGAGAGACCATTAGTGACCGAGACCGCTGTACTCAGTGCAAGGGGGAGAAGGTTGTTCAAGAGAAGAAGGTTTTGGAAGTCCATGTGGAGAAAGGCATGCAGAATGGACAGAAGATCACATTCCCTGGTGAAGCAGATGAAGCTCCTGAGACAGTCACTGGTGATATAGTGTTTGTCATTCAGCAAAAAGAACATCCAAAGTTCAAGAGAAAGGGCGAGGACCTTTTCGTCGAGCACACTCTGTCTCTAACTGAGGCTCTATGCGGCTTCCAGTTTGTGTTGACCCATCTGGATGGCAGGCAGCTGCTTATAAAATCAAACCCTGGCGAAGTTGTCAAGCCTGATTCGTTCAAGGCAATCAATGACGAGGGTATGCCCATCTATCAGAGGCCATTCATGAAGGGGAAGCTGTACATTCACTTTAATGTGGAATTCCCAGAGTCTCTCAACCCTGAGCAAGTAAAGGCCTTGGAGGCTGCTCTTCCAGGCAAGCCATCAGCATCTCAGCTCATGGATATGGAGGTGGATGAGTGTGAGGAGACGAATCTGTATGATGTGAACATGGAGGAGGAGATGAGGAGGAAGCAGCAGCAGGCTCAGCAAGAGGCCTATGATGAGGATGATGACATGCCTGGTGGTGCTCAGAGGGTGCAATGCGCCCAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

340

Amino Acids

37.3

Weight (kDa)

5.8

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 662
AasI GACNNNNNNGTC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 291
AccII CGCG 1 cut(s) 190
AciI CCGC 4 cut(s) 18, 21, 376, 615
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 1 cut(s) 782
AfaI GTAC 3 cut(s) 349, 382, 764
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 5 cut(s) 247, 314, 410, 556, 703
AjiI CACGTC 1 cut(s) 110
AjnI CCWGG 5 cut(s) 294, 475, 673, 835, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 5 cut(s) 178, 494, 655, 760, 859
AluI AGCT 5 cut(s) 178, 494, 655, 760, 859
Alw21I GWGCWC 2 cut(s) 588, 994
Alw26I GTCTC 8 cut(s) 100, 286, 350, 366, 494, 600, 798, 884
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 5 cut(s) 22, 298, 740, 816, 957
ApaI GGGCCC 1 cut(s) 302
ApeKI GCWGC 6 cut(s) 322, 652, 655, 827, 937, 940
ApoI RAATTY 1 cut(s) 782
AspLEI GCGC 1 cut(s) 1010
AspS9I GGNCC 5 cut(s) 151, 165, 298, 299, 571
AsuHPI GGTGA 2 cut(s) 491, 524
AsuII TTCGAA 1 cut(s) 227
AvaII GGWCC 3 cut(s) 151, 165, 571
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 2 cut(s) 588, 994
BbvI GCAGC 6 cut(s) 334, 642, 664, 814, 949, 952
BccI CCATC 4 cut(s) 638, 645, 737, 853
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 5 cut(s) 296, 477, 675, 837, 984
BcoDI GTCTC 8 cut(s) 100, 286, 350, 366, 494, 600, 798, 884
BglI GCCNNNNNGGC 1 cut(s) 824
BisI GCNGC 9 cut(s) 19, 22, 323, 616, 653, 656, 828, 938, 941
BlpI GCTNAGC 1 cut(s) 948
BlsI GCNGC 9 cut(s) 20, 23, 324, 617, 654, 657, 829, 939, 942
Bme1390I CCNGG 5 cut(s) 296, 477, 675, 837, 984
Bme18I GGWCC 3 cut(s) 151, 165, 571
BmgBI CACGTC 1 cut(s) 110
BmgT120I GGNCC 5 cut(s) 151, 165, 298, 299, 571
BmiI GGNNCC 3 cut(s) 166, 293, 300
BmrFI CCNGG 5 cut(s) 296, 477, 675, 837, 984
BmsI GCATC 2 cut(s) 309, 860
BpiI GAAGAC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 804
Bpu1102I GCTNAGC 1 cut(s) 948
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 119
BsaI GGTCTC 3 cut(s) 286, 350, 366
BsaJI CCNNGG 5 cut(s) 91, 295, 475, 673, 819
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 4 cut(s) 274, 355, 514, 622
Bse3DI GCAATG 2 cut(s) 340, 1010
BseBI CCWGG 5 cut(s) 296, 477, 675, 837, 984
BseDI CCNNGG 5 cut(s) 91, 295, 475, 673, 819
BseGI GGATG 4 cut(s) 544, 649, 883, 976
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 340, 1010
BseMII CTCAG 7 cut(s) 398, 489, 594, 795, 869, 962, 1007
BseNI ACTGG 4 cut(s) 274, 355, 514, 622
BseRI GAGGAG 4 cut(s) 902, 932, 935, 943
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 6 cut(s) 334, 642, 664, 814, 949, 952
BseYI CCCAGC 1 cut(s) 1011
Bsh1236I CGCG 1 cut(s) 190
BshFI GGCC 5 cut(s) 24, 300, 742, 818, 959
BshNI GGYRCC 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 588, 994
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 8 cut(s) 100, 286, 350, 366, 494, 600, 798, 884
BsmBI CGTCTC 2 cut(s) 100, 884
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 5 cut(s) 24, 300, 742, 818, 959
Bso31I GGTCTC 3 cut(s) 286, 350, 366
Bsp119I TTCGAA 1 cut(s) 227
Bsp120I GGGCCC 1 cut(s) 298
Bsp1286I GDGCHC 3 cut(s) 302, 588, 994
Bsp1407I TGTACA 1 cut(s) 762
Bsp143I GATC 1 cut(s) 465
Bsp1720I GCTNAGC 1 cut(s) 948
BspACI CCGC 4 cut(s) 18, 21, 376, 615
BspANI GGCC 5 cut(s) 24, 300, 742, 818, 959
BspCNI CTCAG 7 cut(s) 397, 490, 595, 796, 868, 961, 1006
BspFNI CGCG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 747
BspLI GGNNCC 3 cut(s) 166, 293, 300
BspQI GCTCTTC 1 cut(s) 837
BspT104I TTCGAA 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 291
BspTNI GGTCTC 3 cut(s) 286, 350, 366
BsrDI GCAATG 2 cut(s) 340, 1010
BsrGI TGTACA 1 cut(s) 762
BsrI ACTGG 4 cut(s) 274, 355, 514, 622
BssECI CCNNGG 5 cut(s) 91, 295, 475, 673, 819
BssMI GATC 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 5 cut(s) 296, 477, 675, 837, 984
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 837
BstAUI TGTACA 1 cut(s) 762
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 6 cut(s) 327, 331, 449, 650, 842, 945
BstDEI CTNAG 7 cut(s) 384, 498, 603, 804, 855, 948, 993
BstF5I GGATG 4 cut(s) 544, 649, 883, 976
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 1 cut(s) 468
BstMAI GTCTC 8 cut(s) 100, 286, 350, 366, 494, 600, 798, 884
BstMBI GATC 1 cut(s) 465
BstMWI GCNNNNNNNGC 4 cut(s) 196, 491, 824, 949
BstNI CCWGG 5 cut(s) 296, 477, 675, 837, 984
BstNSI RCATGY 3 cut(s) 329, 451, 982
BstSCI CCNGG 5 cut(s) 294, 475, 673, 835, 982
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 6 cut(s) 334, 642, 664, 814, 949, 952
BstV2I GAAGAC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 644
BsuRI GGCC 5 cut(s) 24, 300, 742, 818, 959
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 4 cut(s) 544, 649, 883, 976
BtsIMutI CAGTG 2 cut(s) 392, 507
Cac8I GCNNGC 6 cut(s) 327, 331, 449, 650, 842, 945
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 747
CfoI GCGC 1 cut(s) 1010
Cfr13I GGNCC 5 cut(s) 151, 165, 298, 299, 571
Csp6I GTAC 3 cut(s) 348, 381, 763
CviAII CATG 8 cut(s) 128, 326, 434, 448, 748, 862, 913, 979
CviQI GTAC 3 cut(s) 348, 381, 763
DdeI CTNAG 7 cut(s) 384, 498, 603, 804, 855, 948, 993
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DrdI GACNNNNNNGTC 1 cut(s) 578
DseDI GACNNNNNNGTC 1 cut(s) 578
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 837
EarI CTCTTC 1 cut(s) 837
Eco130I CCWWGG 1 cut(s) 819
Eco147I AGGCCT 2 cut(s) 818, 959
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 3 cut(s) 286, 350, 366
Eco47I GGWCC 3 cut(s) 151, 165, 571
EcoO109I RGGNCCY 3 cut(s) 151, 165, 571
EcoRI GAATTC 1 cut(s) 782
EcoRII CCWGG 5 cut(s) 294, 475, 673, 835, 982
EcoT14I CCWWGG 1 cut(s) 819
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 819
Esp3I CGTCTC 2 cut(s) 100, 884
FaeI CATG 8 cut(s) 131, 329, 437, 451, 751, 865, 916, 982
FaqI GGGAC 1 cut(s) 178
FatI CATG 8 cut(s) 127, 325, 433, 447, 747, 861, 912, 978
Fnu4HI GCNGC 9 cut(s) 19, 22, 323, 616, 653, 656, 828, 938, 941
FokI GGATG 4 cut(s) 531, 656, 890, 983
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 9 cut(s) 19, 22, 323, 616, 653, 656, 828, 938, 941
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 9 cut(s) 19, 22, 323, 616, 653, 656, 828, 938, 941
GsaI CCCAGC 1 cut(s) 1015
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 5 cut(s) 24, 300, 742, 818, 959
HhaI GCGC 1 cut(s) 1010
Hin1II CATG 8 cut(s) 131, 329, 437, 451, 751, 865, 916, 982
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 4 cut(s) 310, 695, 791, 895
HphI GGTGA 2 cut(s) 491, 524
Hpy166II GTNNAC 2 cut(s) 633, 910
Hpy188I TCNGA 2 cut(s) 738, 996
Hpy188III TCNNGA 5 cut(s) 410, 497, 556, 641, 748
Hpy8I GTNNAC 2 cut(s) 633, 910
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 4 cut(s) 271, 394, 412, 745
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 6 cut(s) 131, 322, 333, 390, 451, 1003
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 491, 824, 949
HpyF3I CTNAG 7 cut(s) 384, 498, 603, 804, 855, 948, 993
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 8 cut(s) 131, 329, 437, 451, 751, 865, 916, 982
HspAI GCGC 1 cut(s) 1008
Kzo9I GATC 1 cut(s) 465
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 6 cut(s) 334, 642, 664, 814, 949, 952
LweI GCATC 2 cut(s) 309, 860
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 3 cut(s) 212, 365, 505
MalI GATC 1 cut(s) 467
MboI GATC 1 cut(s) 465
MboII GAAGA 7 cut(s) 34, 111, 128, 184, 427, 475, 824
MhlI GDGCHC 3 cut(s) 302, 588, 994
MluCI AATT 2 cut(s) 285, 782
MlyI GAGTC 1 cut(s) 800
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 4 cut(s) 247, 642, 774, 866
MspA1I CMGCKG 2 cut(s) 378, 655
MspR9I CCNGG 5 cut(s) 296, 477, 675, 837, 984
MvaI CCWGG 5 cut(s) 296, 477, 675, 837, 984
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 4 cut(s) 196, 491, 824, 949
NdeII GATC 1 cut(s) 465
NlaIII CATG 8 cut(s) 131, 329, 437, 451, 751, 865, 916, 982
NlaIV GGNNCC 3 cut(s) 166, 293, 300
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 365, 505
NspI RCATGY 3 cut(s) 329, 451, 982
NspV TTCGAA 1 cut(s) 227
PaeI GCATGC 2 cut(s) 329, 451
PagI TCATGA 1 cut(s) 747
PceI AGGCCT 2 cut(s) 818, 959
PciSI GCTCTTC 1 cut(s) 837
PfeI GAWTC 3 cut(s) 310, 695, 895
PkrI GCNGC 9 cut(s) 20, 23, 324, 617, 654, 657, 829, 939, 942
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
PpuMI RGGWCCY 3 cut(s) 151, 165, 571
PsiI TTATAA 1 cut(s) 662
Psp5II RGGWCCY 3 cut(s) 151, 165, 571
Psp6I CCWGG 5 cut(s) 294, 475, 673, 835, 982
PspFI CCCAGC 1 cut(s) 1011
PspGI CCWGG 5 cut(s) 294, 475, 673, 835, 982
PspN4I GGNNCC 3 cut(s) 166, 293, 300
PspOMI GGGCCC 1 cut(s) 298
PspPI GGNCC 5 cut(s) 151, 165, 298, 299, 571
PspPPI RGGWCCY 3 cut(s) 151, 165, 571
PstNI CAGNNNCTG 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 3 cut(s) 349, 382, 764
RsaNI GTAC 3 cut(s) 348, 381, 763
RseI CAYNNNNRTG 4 cut(s) 247, 642, 774, 866
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 9 cut(s) 19, 22, 323, 616, 653, 656, 828, 938, 941
Sau3AI GATC 1 cut(s) 465
Sau96I GGNCC 5 cut(s) 151, 165, 298, 299, 571
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 5 cut(s) 296, 477, 675, 837, 984
SduI GDGCHC 3 cut(s) 302, 588, 994
SfaNI GCATC 2 cut(s) 309, 860
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 3 cut(s) 151, 165, 571
SmiMI CAYNNNNRTG 4 cut(s) 247, 642, 774, 866
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SphI GCATGC 2 cut(s) 329, 451
Sse9I AATT 2 cut(s) 285, 782
SseBI AGGCCT 2 cut(s) 818, 959
SsiI CCGC 4 cut(s) 18, 21, 376, 615
StuI AGGCCT 2 cut(s) 818, 959
StyD4I CCNGG 5 cut(s) 294, 475, 673, 835, 982
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 112
TaqI TCGA 3 cut(s) 170, 227, 582
TaqII GACCGA 1 cut(s) 384
TasI AATT 2 cut(s) 285, 782
TatI WGTACW 2 cut(s) 380, 762
TauI GCSGC 3 cut(s) 21, 24, 618
TfiI GAWTC 3 cut(s) 310, 695, 895
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 2 cut(s) 392, 514
TseFI GTSAC 2 cut(s) 365, 505
TseI GCWGC 6 cut(s) 322, 652, 655, 827, 937, 940
Tsp45I GTSAC 2 cut(s) 365, 505
TspDTI ATGAA 5 cut(s) 231, 290, 504, 736, 764
TspRI CASTG 2 cut(s) 392, 514
VpaK11BI GGWCC 3 cut(s) 151, 165, 571
XapI RAATTY 1 cut(s) 782
XceI RCATGY 3 cut(s) 329, 451, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.