Rorug04G0445900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001798
Physical Location & Seq
Forward (+)
60180312 .. 60183789
3478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0445900.1

Sequence Viewer

Length: 987 bp
ATGAGGCCGATTCTGATGAAAGGGCACGAGAGGCCCTTGACCTTCCTCAAGTACAACCGCGACGGCGACCTACTCTTCTCCTGCGCCAAGGATCACACCCCCAACGTATGGTTCGCCGACAACGGCGAGCGCCTCGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCCAGAGACTCCTCCCGCCTCATCACCGGTAGCGCAGATCAGAGCGCCAAGCTTTGGGATGTTCAGTCTGGCCAGCAGGTCTTCACCTTCAACTTCGACTCTCCGACGAGGTCGGTGGAGTTCTCCGTCGGCGATAAGCTCGCCGTCATCACCACCGACCCGTTCATGGAGCTCACTTCTGCGATTCACGTCAAACGCATCGCCGGAGACCCTGCCGATCAGACTGCCGAATCGATTCTGACACTCAAGGTTCCTCAGGGGAGAATGAAGATAAACAGAGCTGTTTGGGGGCCGTTGAACAGCACTATCATAAGCGCCGGAGAAGATGCTGTCATTCGTATCTGGGATTCTGAGACTGGAAAACTACTTCAAGAGAACCAGAAGGAAGAGGGTCACACGAAAACAATTACTTCACTAGTAAAATCTCCGGATGGTTCACACTTTCTAACCGGTTCCCTTGATAAATCTGCCAAGCTTTGGGATACTAGAACATTGACTCTTATCAAGACATACCGGACTGAGAGTCCAGTCAATGCAGTTGCAATGTCGCCTCTTCTCAATCATGTTGTACTTGGTGGTGGTCAGGATGCAATCAATGTCACCACAACTGATCATCGTGCTGGGAAATTCGAAGCCAAATTCTATGACAAGATTCTTCAAGAAGAGATTGGAGGTGTTAAAGGGCATTTTGGACCTATTAATGCTTTGGCTTTCAACCCTGATGGTAAAAGTTTCTCAAGTGGAGGTGAAGATGGTTACATACGTCTACATCACTTCGATCATGATTACTTCAACATCAAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

36.28

Weight (kDa)

6.46

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EIF3I PF24805 1 - 327 1.4e-129 EIF3I
Beta-prop_WDR3_1st PF25173 5 - 90 1e-15 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 6 - 107 9.5e-17 WDR5 beta-propeller domain
WD40_Prp19 PF24814 6 - 93 8.8e-09 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 6 - 175 8e-12 CDC20/Fizzy WD40 domain
WDR55 PF24796 7 - 91 8.8e-06 WDR55
Beta-prop_WDR3_2nd PF25172 7 - 80 5.1e-10 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 9 - 87 9.8e-07 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 9 - 91 4.1e-08 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 11 - 108 1.6e-08 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 12 - 200 2.2e-13 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 13 - 127 6.2e-18 THOC3 beta-propeller domain
WD40 PF00400 42 - 80 4.7e-10 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 43 - 85 3e-07 TEP-1 second beta-propeller
Beta-prop_EML PF23409 48 - 269 2e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 67 - 199 4.5e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 147 - 259 1.3e-10 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 148 - 317 2.1e-15 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 148 - 260 3.5e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 149 - 247 5.7e-14 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 149 - 250 5.9e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 150 - 272 6.7e-18 THOC3 beta-propeller domain
WD40_Gbeta PF25391 162 - 268 3.3e-12 G protein beta WD-40 repeat protein
WDR55 PF24796 162 - 273 1.3e-06 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 190 - 246 4.2e-07 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 190 - 221 2.2e-08 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 198 - 325 1.3e-10 Echinoderm microtubule-associated protein second beta-propeller
WD40 PF00400 285 - 316 9e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 247
AccB1I GGYRCC 2 cut(s) 137, 158
AccB7I CCANNNNNTGG 3 cut(s) 108, 234, 657
AccI GTMKAC 1 cut(s) 946
AccII CGCG 2 cut(s) 60, 147
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 4 cut(s) 58, 145, 147, 196
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 2 cut(s) 148, 250
AcsI RAATTY 2 cut(s) 806, 818
AcyI GRCGYC 2 cut(s) 159, 177
AfaI GTAC 2 cut(s) 53, 750
AfiI CCNNNNNNNGG 4 cut(s) 108, 234, 346, 657
AgeI ACCGGT 2 cut(s) 206, 629
AgsI TTSAA 6 cut(s) 271, 478, 551, 839, 895, 973
AhdI GACNNNNNGTC 1 cut(s) 702
AhlI ACTAGT 1 cut(s) 595
AjiI CACGTC 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 5 cut(s) 232, 319, 352, 461, 655
AluI AGCT 5 cut(s) 232, 319, 352, 461, 655
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 4 cut(s) 180, 184, 381, 527
AlwI GGATC 1 cut(s) 99
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 5 cut(s) 5, 32, 148, 250, 470
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 2 cut(s) 806, 818
AseI ATTAAT 1 cut(s) 879
AsiGI ACCGGT 2 cut(s) 206, 629
Asp700I GAANNNNTTC 1 cut(s) 414
AspLEI GCGC 6 cut(s) 86, 132, 161, 215, 227, 497
AspS9I GGNCC 3 cut(s) 33, 470, 872
AsuHPI GGTGA 5 cut(s) 196, 256, 322, 772, 938
AsuII TTCGAA 1 cut(s) 810
AvaII GGWCC 1 cut(s) 872
AxyI CCTNAGG 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 252
BanI GGYRCC 2 cut(s) 137, 158
BanII GRGCYC 1 cut(s) 354
BauI CACGAG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 158
BccI CCATC 3 cut(s) 605, 896, 926
BceAI ACGGC 6 cut(s) 79, 139, 146, 172, 308, 457
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciVI GTATCC 1 cut(s) 655
BclI TGATCA 1 cut(s) 790
BcoDI GTCTC 4 cut(s) 180, 184, 381, 527
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 2 cut(s) 596, 666
BfoI RGCGCY 4 cut(s) 133, 162, 228, 498
BfuAI ACCTGC 1 cut(s) 247
BfuI GTATCC 1 cut(s) 655
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 2 cut(s) 148, 172
BlsI GCNGC 2 cut(s) 149, 173
Bme18I GGWCC 1 cut(s) 872
BmeRI GACNNNNNGTC 1 cut(s) 702
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 3 cut(s) 33, 470, 872
BmiI GGNNCC 5 cut(s) 139, 160, 432, 471, 634
BmsI GCATC 3 cut(s) 387, 496, 757
BpiI GAAGAC 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 810
BpuEI CTTGAG 3 cut(s) 32, 410, 901
Bsa29I ATCGAT 1 cut(s) 413
BsaHI GRCGYC 2 cut(s) 159, 177
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 87, 133, 145
BsaWI WCCGGW 4 cut(s) 206, 607, 629, 693
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 234, 346, 657
Bse118I RCCGGY 2 cut(s) 206, 629
Bse1I ACTGG 2 cut(s) 541, 707
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 729
BseAI TCCGGA 1 cut(s) 607
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 3 cut(s) 87, 133, 145
BseGI GGATG 3 cut(s) 244, 616, 772
BseLI CCNNNNNNNGG 4 cut(s) 108, 234, 346, 657
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 3 cut(s) 449, 522, 690
BseNI ACTGG 2 cut(s) 541, 707
BseRI GAGGAG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 800
Bsh1236I CGCG 2 cut(s) 60, 147
BshFI GGCC 5 cut(s) 7, 34, 150, 252, 472
BshNI GGYRCC 2 cut(s) 137, 158
BshTI ACCGGT 2 cut(s) 206, 629
BshVI ATCGAT 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 6 cut(s) 207, 384, 498, 608, 630, 694
BslI CCNNNNNNNGG 4 cut(s) 108, 234, 346, 657
BsmAI GTCTC 4 cut(s) 180, 184, 381, 527
BsmBI CGTCTC 1 cut(s) 184
BsnI GGCC 5 cut(s) 7, 34, 150, 252, 472
Bso31I GGTCTC 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 810
Bsp1286I GDGCHC 2 cut(s) 27, 354
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 5 cut(s) 91, 217, 397, 790, 958
BspACI CCGC 4 cut(s) 58, 145, 147, 196
BspANI GGCC 5 cut(s) 7, 34, 150, 252, 472
BspCNI CTCAG 3 cut(s) 448, 523, 691
BspDI ATCGAT 1 cut(s) 413
BspEI TCCGGA 1 cut(s) 607
BspFNI CGCG 2 cut(s) 60, 147
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 5 cut(s) 139, 160, 432, 471, 634
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 810
BspT107I GGYRCC 2 cut(s) 137, 158
BspTNI GGTCTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 729
BsrFI RCCGGY 2 cut(s) 206, 629
BsrI ACTGG 2 cut(s) 541, 707
BssAI RCCGGY 2 cut(s) 206, 629
BssECI CCNNGG 3 cut(s) 87, 133, 145
BssMI GATC 5 cut(s) 91, 217, 397, 790, 958
BssNI GRCGYC 2 cut(s) 159, 177
BssSI CACGAG 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 26
Bst6I CTCTTC 4 cut(s) 80, 561, 738, 837
BstACI GRCGYC 2 cut(s) 159, 177
BstBI TTCGAA 1 cut(s) 810
BstC8I GCNNGC 3 cut(s) 128, 254, 321
BstDEI CTNAG 3 cut(s) 435, 531, 699
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 3 cut(s) 244, 616, 772
BstFNI CGCG 2 cut(s) 60, 147
BstH2I RGCGCY 4 cut(s) 133, 162, 228, 498
BstHHI GCGC 6 cut(s) 86, 132, 161, 215, 227, 497
BstKTI GATC 5 cut(s) 94, 220, 400, 793, 961
BstMAI GTCTC 4 cut(s) 180, 184, 381, 527
BstMBI GATC 5 cut(s) 91, 217, 397, 790, 958
BstMWI GCNNNNNNNGC 3 cut(s) 31, 144, 156
BstSLI GKGCMC 1 cut(s) 27
BstUI CGCG 2 cut(s) 60, 147
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 413
Bsu36I CCTNAGG 1 cut(s) 435
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 5 cut(s) 7, 34, 150, 252, 472
BsuTUI ATCGAT 1 cut(s) 413
BtgI CCRYGG 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 364
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 3 cut(s) 244, 616, 772
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 3 cut(s) 128, 254, 321
CciI TCATGA 1 cut(s) 961
CfoI GCGC 6 cut(s) 86, 132, 161, 215, 227, 497
Cfr10I RCCGGY 2 cut(s) 206, 629
Cfr13I GGNCC 3 cut(s) 33, 470, 872
Cfr42I CCGCGG 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 413
Csp6I GTAC 2 cut(s) 52, 749
CspAI ACCGGT 2 cut(s) 206, 629
CviAII CATG 3 cut(s) 346, 743, 962
CviQI GTAC 2 cut(s) 52, 749
DdeI CTNAG 3 cut(s) 435, 531, 699
DinI GGCGCC 1 cut(s) 160
DpnI GATC 5 cut(s) 93, 219, 399, 792, 960
DpnII GATC 5 cut(s) 91, 217, 397, 790, 958
DriI GACNNNNNGTC 1 cut(s) 702
EaeI YGGCCR 2 cut(s) 148, 250
Eam1104I CTCTTC 4 cut(s) 80, 561, 738, 837
Eam1105I GACNNNNNGTC 1 cut(s) 702
EarI CTCTTC 4 cut(s) 80, 561, 738, 837
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 872
Eco53kI GAGCTC 1 cut(s) 352
Eco81I CCTNAGG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 354
EgeI GGCGCC 1 cut(s) 160
EheI GGCGCC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 3 cut(s) 349, 746, 965
FaiI YATR 8 cut(s) 109, 347, 491, 691, 744, 825, 941, 963
FatI CATG 3 cut(s) 345, 742, 961
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 790
FblI GTMKAC 1 cut(s) 946
Fnu4HI GCNGC 2 cut(s) 148, 172
FokI GGATG 3 cut(s) 251, 623, 779
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 148, 172
FspBI CTAG 2 cut(s) 596, 666
GlaI GCGC 6 cut(s) 85, 131, 160, 214, 226, 496
GluI GCNGC 2 cut(s) 148, 172
GsaI CCCAGC 1 cut(s) 804
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 4 cut(s) 133, 162, 228, 498
HaeIII GGCC 5 cut(s) 7, 34, 150, 252, 472
HapII CCGG 6 cut(s) 207, 384, 498, 608, 630, 694
HhaI GCGC 6 cut(s) 86, 132, 161, 215, 227, 497
Hin1I GRCGYC 2 cut(s) 159, 177
Hin1II CATG 3 cut(s) 349, 746, 965
Hin6I GCGC 6 cut(s) 84, 130, 159, 213, 225, 495
HinP1I GCGC 6 cut(s) 84, 130, 159, 213, 225, 495
HindIII AAGCTT 2 cut(s) 230, 653
HpaII CCGG 6 cut(s) 207, 384, 498, 608, 630, 694
HphI GGTGA 5 cut(s) 196, 256, 322, 772, 938
Hpy166II GTNNAC 2 cut(s) 617, 947
Hpy188I TCNGA 6 cut(s) 15, 222, 285, 402, 420, 532
Hpy188III TCNNGA 8 cut(s) 183, 551, 608, 685, 764, 839, 962, 979
Hpy8I GTNNAC 2 cut(s) 617, 947
Hpy99I CGWCG 4 cut(s) 65, 179, 289, 311
HpyAV CCTTC 3 cut(s) 52, 277, 556
HpyCH4IV ACGT 4 cut(s) 105, 177, 369, 943
HpyCH4V TGCA 3 cut(s) 716, 722, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 144, 156
HpyF3I CTNAG 3 cut(s) 435, 531, 699
HpySE526I ACGT 4 cut(s) 105, 177, 369, 943
Hsp92I GRCGYC 2 cut(s) 159, 177
Hsp92II CATG 3 cut(s) 349, 746, 965
HspAI GCGC 6 cut(s) 84, 130, 159, 213, 225, 495
KasI GGCGCC 1 cut(s) 158
Kpn2I TCCGGA 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 790
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 5 cut(s) 91, 217, 397, 790, 958
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 3 cut(s) 387, 496, 757
MaeI CTAG 2 cut(s) 596, 666
MaeII ACGT 4 cut(s) 105, 177, 369, 943
MaeIII GTNAC 3 cut(s) 572, 778, 935
MalI GATC 5 cut(s) 93, 219, 399, 792, 960
MboI GATC 5 cut(s) 91, 217, 397, 790, 958
MboII GAAGA 9 cut(s) 67, 253, 460, 515, 578, 725, 827, 854, 941
MhlI GDGCHC 2 cut(s) 27, 354
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 3 cut(s) 585, 806, 818
MluNI TGGCCA 1 cut(s) 252
Mly113I GGCGCC 1 cut(s) 159
MlyI GAGTC 4 cut(s) 182, 272, 670, 712
MmeI TCCRAC 1 cut(s) 308
Mox20I TGGCCA 1 cut(s) 252
MroI TCCGGA 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 414
MscI TGGCCA 1 cut(s) 252
MseI TTAA 2 cut(s) 858, 879
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 6 cut(s) 207, 384, 498, 608, 630, 694
MvnI CGCG 2 cut(s) 60, 147
MwoI GCNNNNNNNGC 3 cut(s) 31, 144, 156
NarI GGCGCC 1 cut(s) 159
NdeII GATC 5 cut(s) 91, 217, 397, 790, 958
NlaIII CATG 3 cut(s) 349, 746, 965
NlaIV GGNNCC 5 cut(s) 139, 160, 432, 471, 634
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 2 cut(s) 572, 778
NspV TTCGAA 1 cut(s) 810
PagI TCATGA 1 cut(s) 961
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 6 cut(s) 10, 364, 410, 415, 527, 832
PflFI GACNNNGTC 1 cut(s) 289
PflMI CCANNNNNTGG 3 cut(s) 108, 234, 657
PinAI ACCGGT 2 cut(s) 206, 629
PkrI GCNGC 2 cut(s) 149, 173
PleI GAGTC 4 cut(s) 182, 272, 670, 711
PluTI GGCGCC 1 cut(s) 162
PpsI GAGTC 4 cut(s) 182, 272, 670, 711
PshBI ATTAAT 1 cut(s) 879
Psp124BI GAGCTC 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 800
PspN4I GGNNCC 5 cut(s) 139, 160, 432, 471, 634
PspPI GGNCC 3 cut(s) 33, 470, 872
PsyI GACNNNGTC 1 cut(s) 289
RsaI GTAC 2 cut(s) 53, 750
RsaNI GTAC 2 cut(s) 52, 749
SacI GAGCTC 1 cut(s) 354
SacII CCGCGG 1 cut(s) 148
SaqAI TTAA 2 cut(s) 858, 879
SatI GCNGC 2 cut(s) 148, 172
Sau3AI GATC 5 cut(s) 91, 217, 397, 790, 958
Sau96I GGNCC 3 cut(s) 33, 470, 872
SchI GAGTC 4 cut(s) 182, 272, 670, 712
SduI GDGCHC 2 cut(s) 27, 354
SfaNI GCATC 3 cut(s) 387, 496, 757
SfoI GGCGCC 1 cut(s) 160
Sfr303I CCGCGG 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 810
SgrBI CCGCGG 1 cut(s) 148
SinI GGWCC 1 cut(s) 872
SmlI CTYRAG 3 cut(s) 47, 425, 916
SmoI CTYRAG 3 cut(s) 47, 425, 916
SpeI ACTAGT 1 cut(s) 595
Sse9I AATT 3 cut(s) 585, 806, 818
SsiI CCGC 4 cut(s) 58, 145, 147, 196
SspDI GGCGCC 1 cut(s) 158
SspMI CTAG 2 cut(s) 596, 666
SstI GAGCTC 1 cut(s) 354
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 4 cut(s) 108, 180, 372, 946
TaqI TCGA 4 cut(s) 276, 413, 810, 957
TasI AATT 3 cut(s) 585, 806, 818
TatI WGTACW 2 cut(s) 51, 748
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 6 cut(s) 10, 364, 410, 415, 527, 832
Tru1I TTAA 2 cut(s) 858, 879
Tru9I TTAA 2 cut(s) 858, 879
TseFI GTSAC 2 cut(s) 572, 778
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 2 cut(s) 572, 778
TspDTI ATGAA 3 cut(s) 32, 334, 461
TspGWI ACGGA 1 cut(s) 295
Tth111I GACNNNGTC 1 cut(s) 289
Van91I CCANNNNNTGG 3 cut(s) 108, 234, 657
VpaK11BI GGWCC 1 cut(s) 872
VspI ATTAAT 1 cut(s) 879
XapI RAATTY 2 cut(s) 806, 818
XmiI GTMKAC 1 cut(s) 946
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 2 cut(s) 596, 666
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.