Rmu_sc0000288.1_g000020

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000288.1
OG0001798
Physical Location & Seq
Reverse (-)
60907 .. 61795
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000288.1_g000020.1.cds

Sequence Viewer

Length: 531 bp
atgtgtaagctgtatcaaaccaatgctggattcactgatgatctgataagttcagagaagtctatggcacaaccagctgaaaattttgataccgctgctacaattgcttttcttgagataggagagacctgtatagccttgcagaagtttctgataatgattattgagcttgacttgtcgaagaagacggcagaaatgcaagggtctactacaagagcagatggtgtcagaactcctctgctggagatagttctggacgagctatcttacgataaggatattcttgactcatttcttcaggttcaaatctctttccattttccattcatgggaggtggcgagctcgtcagcgacagtcaatcaagaggagacccggccgttgcgagtcaaccagaccatctcggccatccagagagtcatgttccatggcattgccatctctctctctctctctctgctctttggtctcgagatttcctttcctctcaaaagtccaatttgcgtgagttcttgttgggttacgcatcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.47

Weight (kDa)

4.71

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 206
AciI CCGC 1 cut(s) 93
AcoI YGGCCR 2 cut(s) 375, 403
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 305
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 5 cut(s) 10, 77, 169, 262, 343
AluI AGCT 5 cut(s) 10, 77, 169, 262, 343
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 3 cut(s) 119, 363, 471
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 2 cut(s) 375, 403
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 468
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 82
BccI CCATC 4 cut(s) 215, 405, 414, 444
BceAI ACGGC 2 cut(s) 204, 362
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 3 cut(s) 119, 363, 471
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 374
BsaI GGTCTC 3 cut(s) 119, 363, 471
BsaJI CCNNGG 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 430
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 2 cut(s) 406, 524
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 430
BseRI GAGGAG 2 cut(s) 225, 381
BseX3I CGGCCG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 377, 405
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 3 cut(s) 119, 363, 471
BsnI GGCC 2 cut(s) 377, 405
Bso31I GGTCTC 3 cut(s) 119, 363, 471
BsoBI CYCGRG 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 425
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 377, 405
BspTNI GGTCTC 3 cut(s) 119, 363, 471
BsrDI GCAATG 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 425
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 341
BstDSI CCRYGG 1 cut(s) 425
BstF5I GGATG 2 cut(s) 406, 524
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 3 cut(s) 119, 363, 471
BstMBI GATC 1 cut(s) 40
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 2 cut(s) 74, 104
BstSCI CCNGG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 191
BstZI CGGCCG 1 cut(s) 375
BsuRI GGCC 2 cut(s) 377, 405
BtgI CCRYGG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 406, 524
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 341
CviAII CATG 3 cut(s) 328, 419, 426
CviJI RGCY 8 cut(s) 10, 77, 137, 169, 262, 343, 377, 405
CviKI_1 RGCY 8 cut(s) 10, 77, 137, 169, 262, 343, 377, 405
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 375, 403
EagI CGGCCG 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 343
EclXI CGGCCG 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 345
Eco31I GGTCTC 3 cut(s) 119, 363, 471
Eco52I CGGCCG 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 425
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 3 cut(s) 331, 422, 429
FaiI YATR 5 cut(s) 65, 134, 329, 420, 427
FatI CATG 3 cut(s) 327, 418, 425
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 393, 511
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 2 cut(s) 377, 405
HapII CCGG 1 cut(s) 374
Hin1II CATG 3 cut(s) 331, 422, 429
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HinfI GANTC 4 cut(s) 30, 287, 385, 415
HpaII CCGG 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 207, 389
Hpy188I TCNGA 4 cut(s) 45, 55, 153, 230
Hpy188III TCNNGA 7 cut(s) 113, 254, 284, 363, 410, 468, 470
Hpy8I GTNNAC 2 cut(s) 207, 389
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 2 cut(s) 142, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 104
Hsp92II CATG 3 cut(s) 331, 422, 429
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 9 cut(s) 12, 87, 142, 227, 239, 284, 387, 405, 423
Lsp1109I GCAGC 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 518
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 3 cut(s) 193, 196, 287
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 82, 102, 496
MlyI GAGTC 3 cut(s) 281, 394, 424
MnlI CCTC 4 cut(s) 246, 326, 359, 493
MspA1I CMGCKG 2 cut(s) 77, 95
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 374
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 74, 104
NciI CCSGG 1 cut(s) 374
NcoI CCATGG 1 cut(s) 425
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 331, 422, 429
NmeAIII GCCGAG 1 cut(s) 381
PaeR7I CTCGAG 1 cut(s) 468
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 3 cut(s) 281, 393, 423
PpsI GAGTC 3 cut(s) 281, 393, 423
Psp124BI GAGCTC 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 345
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 40
SchI GAGTC 3 cut(s) 281, 394, 424
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 345
SetI ASST 8 cut(s) 12, 79, 131, 171, 264, 303, 337, 345
Sfr274I CTCGAG 1 cut(s) 468
SlaI CTCGAG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 113, 468
SmoI CTYRAG 2 cut(s) 113, 468
Sse9I AATT 3 cut(s) 82, 102, 496
SsiI CCGC 1 cut(s) 93
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 179, 469
TasI AATT 3 cut(s) 82, 102, 496
TfiI GAWTC 1 cut(s) 30
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 316
TspRI CASTG 1 cut(s) 40
XapI RAATTY 1 cut(s) 82
XhoI CTCGAG 1 cut(s) 468
XmiI GTMKAC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.