Rh3BG242100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001798
Physical Location & Seq
Forward (+)
22789960 .. 22793186
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG242100.1

Sequence Viewer

Length: 855 bp
ATGATCCCCTCAGAGAAGATATATCCGCTGGATACGACAATGTCAAGGATCTTCGCCATCTTGAGGATTGGAAAATCTCTGGAGTTGACTATGGCAAGTTTTAAGCTTTGGAATGAGTTAGATAAGTGTTTCCCTCGGGTGCATTTGTCTGTTGTTGATGAAATGAAATCGTCCAGCTTGTCGCCATTTGTTTTCAGCTTTGAAAGTACTAGTAGCGAGAGGGAAGCTGCTAATAACCCTGGGGGATCAGTTGACTCCGCTGGTTTCCAACGTTTGATAGAAGACCTTGCTGATGCAACTGCTGAACCAAACTTCCAGGCCTCAGAAACAAAGGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTGCTTGGCCATTATGTGTAAGCTGTATCAAACCAATGCTGGATTCACTGATGATCTGATAAGTTCAGAGAAGTCTATGGCACAACCAGCTGAAAATTTTGATACCGCTGCTACAATTGCTTTTCTTGAGATAGGAAAGAATACCTGTATAGCCATGCAGAAGTTTCTGATAATGATTATGGAGCTTGACTTGTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAAGAGCAGATGGTGTCAGAACTCCTCTGCTGGAGATAGTTCTGGACGAGCTAACTTACGATAAGGATATTCTTGACTCATTTCTTCAAGTTCAAATCTCTTTCCATTTTCCATTCATGGTTCGTTCTGTTTCTGTATTTGTATATAGTCTGAAGCATATGTTACAGTCAGTGTGTTTGACTACAAACGGAACATGTTTGATATCTCCCTTAAACTTTAATGGTGAGAATTACAGATTTTATCACCTTAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.99

Weight (kDa)

5.35

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 593
AciI CCGC 3 cut(s) 26, 258, 477
AclI AACGTT 1 cut(s) 271
AclWI GGATC 2 cut(s) 56, 253
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 2 cut(s) 466, 848
AcuI CTGAAG 1 cut(s) 770
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 791
AgsI TTSAA 3 cut(s) 203, 686, 692
AhlI ACTAGT 1 cut(s) 209
AjnI CCWGG 2 cut(s) 238, 315
AjuI GAANNNNNNNTTGG 4 cut(s) 359, 391, 398, 430
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 8 cut(s) 106, 177, 198, 227, 394, 461, 556, 649
AluI AGCT 8 cut(s) 106, 177, 198, 227, 394, 461, 556, 649
AlwI GGATC 2 cut(s) 56, 253
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 2 cut(s) 318, 378
ApeKI GCWGC 2 cut(s) 227, 479
ApoI RAATTY 2 cut(s) 466, 848
AsuHPI GGTGA 2 cut(s) 833, 833
AvaI CYCGRG 1 cut(s) 135
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BalI TGGCCA 1 cut(s) 380
BbsI GAAGAC 2 cut(s) 288, 578
BbvI GCAGC 2 cut(s) 214, 466
BccI CCATC 2 cut(s) 65, 602
BciT130I CCWGG 2 cut(s) 240, 317
BciVI GTATCC 1 cut(s) 25
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 1 cut(s) 210
BfuI GTATCC 1 cut(s) 25
BisI GCNGC 2 cut(s) 228, 480
BlsI GCNGC 2 cut(s) 229, 481
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 240, 317
BmeT110I CYCGRG 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 240, 317
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 288, 578
BpmI CTGGAG 2 cut(s) 101, 650
BpuEI CTTGAG 2 cut(s) 82, 518
BsaJI CCNNGG 3 cut(s) 134, 238, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 63
BseBI CCWGG 2 cut(s) 240, 317
BseDI CCNNGG 3 cut(s) 134, 238, 239
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 24, 336
BseRI GAGGAG 1 cut(s) 612
BseXI GCAGC 2 cut(s) 214, 466
BshFI GGCC 2 cut(s) 320, 380
BsiHKCI CYCGRG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 63
BsnI GGCC 2 cut(s) 320, 380
BsoBI CYCGRG 1 cut(s) 135
Bsp143I GATC 4 cut(s) 3, 48, 245, 424
BspACI CCGC 3 cut(s) 26, 258, 477
BspANI GGCC 2 cut(s) 320, 380
BspCNI CTCAG 2 cut(s) 23, 335
BspPI GGATC 2 cut(s) 56, 253
BssECI CCNNGG 3 cut(s) 134, 238, 239
BssMI GATC 4 cut(s) 3, 48, 245, 424
Bst2UI CCWGG 2 cut(s) 240, 317
Bst4CI ACNGT 1 cut(s) 765
BstDEI CTNAG 2 cut(s) 10, 322
BstKTI GATC 4 cut(s) 6, 51, 248, 427
BstMBI GATC 4 cut(s) 3, 48, 245, 424
BstMWI GCNNNNNNNGC 2 cut(s) 458, 488
BstNI CCWGG 2 cut(s) 240, 317
BstNSI RCATGY 1 cut(s) 795
BstSCI CCNGG 2 cut(s) 238, 315
BstV1I GCAGC 2 cut(s) 214, 466
BstV2I GAAGAC 2 cut(s) 288, 578
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 320, 380
BtsIMutI CAGTG 2 cut(s) 417, 774
Csp6I GTAC 1 cut(s) 207
CviAII CATG 3 cut(s) 526, 715, 792
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 2 cut(s) 10, 322
DpnI GATC 4 cut(s) 5, 50, 247, 426
DpnII GATC 4 cut(s) 3, 48, 245, 424
EaeI YGGCCR 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 320
Eco32I GATATC 1 cut(s) 801
Eco57I CTGAAG 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 238, 315
EcoRV GATATC 1 cut(s) 801
FaeI CATG 3 cut(s) 529, 718, 795
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FatI CATG 3 cut(s) 525, 714, 791
FauNDI CATATG 1 cut(s) 756
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 2 cut(s) 228, 480
Fsp4HI GCNGC 2 cut(s) 228, 480
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 228, 480
GsuI CTGGAG 2 cut(s) 101, 650
HaeIII GGCC 2 cut(s) 320, 380
Hin1II CATG 3 cut(s) 529, 718, 795
HincII GTYRAC 2 cut(s) 87, 253
HindII GTYRAC 2 cut(s) 87, 253
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 3 cut(s) 254, 414, 674
HphI GGTGA 2 cut(s) 833, 833
Hpy166II GTNNAC 3 cut(s) 87, 253, 594
Hpy188I TCNGA 7 cut(s) 13, 325, 429, 439, 540, 617, 750
Hpy188III TCNNGA 6 cut(s) 61, 80, 339, 497, 641, 671
Hpy8I GTNNAC 3 cut(s) 87, 253, 594
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 765
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 142, 296, 529, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 488
HpyF3I CTNAG 2 cut(s) 10, 322
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 3 cut(s) 529, 718, 795
Kzo9I GATC 4 cut(s) 3, 48, 245, 424
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 2 cut(s) 214, 466
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 759
MalI GATC 4 cut(s) 5, 50, 247, 426
MboI GATC 4 cut(s) 3, 48, 245, 424
MboII GAAGA 6 cut(s) 28, 43, 293, 580, 583, 674
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 4 cut(s) 466, 486, 826, 848
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 2 cut(s) 248, 668
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 6 cut(s) 19, 57, 144, 213, 331, 633
Mox20I TGGCCA 1 cut(s) 380
MscI TGGCCA 1 cut(s) 380
MseI TTAA 4 cut(s) 102, 809, 816, 846
Msp20I TGGCCA 1 cut(s) 380
MspA1I CMGCKG 4 cut(s) 28, 260, 461, 479
MspR9I CCNGG 2 cut(s) 240, 317
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 2 cut(s) 240, 317
MwoI GCNNNNNNNGC 2 cut(s) 458, 488
NdeI CATATG 1 cut(s) 756
NdeII GATC 4 cut(s) 3, 48, 245, 424
NlaIII CATG 3 cut(s) 529, 718, 795
NspI RCATGY 1 cut(s) 795
PasI CCCWGGG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 320
PciI ACATGT 1 cut(s) 791
PfeI GAWTC 1 cut(s) 414
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 229, 481
PleI GAGTC 2 cut(s) 248, 668
PpsI GAGTC 2 cut(s) 248, 668
PscI ACATGT 1 cut(s) 791
Psp1406I AACGTT 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 238, 315
PspGI CCWGG 2 cut(s) 238, 315
PsuI RGATCY 1 cut(s) 48
PsyI GACNNNGTC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 4 cut(s) 102, 809, 816, 846
SatI GCNGC 2 cut(s) 228, 480
Sau3AI GATC 4 cut(s) 3, 48, 245, 424
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 2 cut(s) 248, 668
ScrFI CCNGG 2 cut(s) 240, 317
SfaNI GCATC 1 cut(s) 283
SmlI CTYRAG 2 cut(s) 61, 497
SmoI CTYRAG 2 cut(s) 61, 497
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 4 cut(s) 466, 486, 826, 848
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 3 cut(s) 26, 258, 477
SspMI CTAG 1 cut(s) 210
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 238, 315
TaaI ACNGT 1 cut(s) 765
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 566
TasI AATT 4 cut(s) 466, 486, 826, 848
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 4 cut(s) 102, 809, 816, 846
Tru9I TTAA 4 cut(s) 102, 809, 816, 846
TscAI CASTG 2 cut(s) 424, 774
TseI GCWGC 2 cut(s) 227, 479
TspDTI ATGAA 4 cut(s) 174, 179, 380, 703
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 2 cut(s) 424, 774
Tth111I GACNNNGTC 1 cut(s) 40
XapI RAATTY 2 cut(s) 466, 848
XceI RCATGY 1 cut(s) 795
XmiI GTMKAC 1 cut(s) 593
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.