Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

11277185 .. 11278318

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATCAGATTCGCGAGACCAAAACCTATAATTGACTCAGTGAGTTACAATCTTCTCCAGAAATGTTACGCTAGTGGAACCCCCAAAGGAAAATCGAAGCTGAAGACAGGCCAATCATTGAAACGCAACAAACTCACAATCAAAAAAGGCGGTGGAAACGGCGGTGGCAGAGGTGGTGATGAGGTGGATAAGGGAAAAGGAAGAATCTCAGATCAATGCATAAACGCTCCTTGTCCTGTTCGTTACCTGAGACCTAAGGAAAGAGAGCGAGAAGCGAGACGAGAGAAGCTAGGGCTAATCAGTAAAGCGAGGCAAAAAGAGATTGATTTTCAGAAGAAAGGTGGATCCTTTACGATGGGAGTTACTACTGCGCCGATGAGGATTGGGACTCCAGGATTGGATTACATTTCGTTAGGGATTTTTACGGAAGATGAGTTACCAAAGTATAAGGTTACAGTGGAGGATGGGATTAGACTTGCGAAAGAGTATAGTAGAGTGCTTATGAGAGAGCATAGAGCGAGACGTGTAGCGGAGATTAGTTTGATGAAGATGAGGAACGCTGCGGTTGAGGCATTGCCGGAGAATTTGAAGAAGGCGGCTTTAGTGCGTGATTTGACTCCGTTTCCGGTGAGTCGAGGTACGGCTACGCTTACTCCACCTATTGAAGGGTATTTGGAGAGGATTATGAATGCTGCGGCTAGGAAGAGCTCTGGTAAAGAGAAGTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

27.0

Weight (kDa)

10.25

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	6 cut(s)	150, 162, 530, 563, 596, 695
AclWI	GGATC	2 cut(s)	339, 352
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	665
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	121, 589, 665
AjiI	CACGTC	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	3 cut(s)	100, 289, 708
AluI	AGCT	3 cut(s)	100, 289, 708
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	4 cut(s)	10, 244, 271, 514
AlwI	GGATC	2 cut(s)	339, 352
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	560, 692
ApoI	RAATTY	1 cut(s)	583
AspLEI	GCGC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	188, 640
AxyI	CCTNAGG	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	710
BarI	GAAGNNNNNNTAC	2 cut(s)	420, 452
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	710
BbvI	GCAGC	2 cut(s)	547, 679
BccI	CCATC	2 cut(s)	349, 458
BceAI	ACGGC	2 cut(s)	175, 657
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	4 cut(s)	10, 244, 271, 514
BfaI	CTAG	3 cut(s)	72, 290, 699
BisI	GCNGC	4 cut(s)	561, 597, 693, 696
BlsI	GCNGC	4 cut(s)	562, 598, 694, 697
Bme1390I	CCNGG	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	79, 346
BmrFI	CCNGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	41, 375
BsaI	GGTCTC	2 cut(s)	10, 244
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	572
BseBI	CCWGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	3 cut(s)	51, 222, 239
BseXI	GCAGC	2 cut(s)	547, 679
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	710
BsiSI	CCGG	2 cut(s)	578, 626
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	4 cut(s)	10, 244, 271, 514
BsmBI	CGTCTC	2 cut(s)	271, 514
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	2 cut(s)	10, 244
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp143I	GATC	3 cut(s)	3, 211, 344
Bsp68I	TCGCGA	1 cut(s)	14
BspACI	CCGC	6 cut(s)	150, 162, 530, 563, 596, 695
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	50, 221, 240
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	79, 346
BspPI	GGATC	2 cut(s)	339, 352
BspQI	GCTCTTC	1 cut(s)	698
BspTNI	GGTCTC	2 cut(s)	10, 244
BsrDI	GCAATG	1 cut(s)	572
BssMI	GATC	3 cut(s)	3, 211, 344
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	698
BstDEI	CTNAG	4 cut(s)	37, 208, 248, 255
BstENI	CCTNNNNNAGG	1 cut(s)	663
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	3 cut(s)	6, 214, 347
BstMAI	GTCTC	4 cut(s)	10, 244, 271, 514
BstMBI	GATC	3 cut(s)	3, 211, 344
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	547, 679
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	2 cut(s)	45, 462
BtuMI	TCGCGA	1 cut(s)	14
CfoI	GCGC	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	639
CviJI	RGCY	8 cut(s)	100, 111, 289, 295, 599, 644, 698, 708
CviKI_1	RGCY	8 cut(s)	100, 111, 289, 295, 599, 644, 698, 708
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	4 cut(s)	37, 208, 248, 255
DpnI	GATC	3 cut(s)	5, 213, 346
DpnII	GATC	3 cut(s)	3, 211, 344
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
Ecl136II	GAGCTC	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	710
Eco31I	GGTCTC	2 cut(s)	10, 244
Eco53kI	GAGCTC	1 cut(s)	708
Eco57I	CTGAAG	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	708
EcoNI	CCTNNNNNAGG	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	391
EcoT22I	ATGCAT	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	710
Esp3I	CGTCTC	2 cut(s)	271, 514
FaiI	YATR	7 cut(s)	29, 221, 447, 489, 503, 513, 686
FaqI	GGGAC	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	561, 597, 693, 696
FokI	GGATG	1 cut(s)	476
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	4 cut(s)	561, 597, 693, 696
FspBI	CTAG	3 cut(s)	72, 290, 699
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	4 cut(s)	561, 597, 693, 696
GsuI	CTGGAG	2 cut(s)	41, 375
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	578, 626
HhaI	GCGC	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	6 cut(s)	9, 35, 204, 388, 616, 631
HpaII	CCGG	2 cut(s)	578, 626
HphI	GGTGA	2 cut(s)	188, 640
Hpy188I	TCNGA	3 cut(s)	8, 211, 333
Hpy188III	TCNNGA	2 cut(s)	13, 58
HpyAV	CCTTC	2 cut(s)	586, 659
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	4 cut(s)	37, 208, 248, 255
HpySE526I	ACGT	1 cut(s)	523
HspAI	GCGC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 211, 344
LguI	GCTCTTC	1 cut(s)	698
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	9 cut(s)	71, 93, 249, 260, 378, 405, 591, 639, 696
Lsp1109I	GCAGC	2 cut(s)	547, 679
MaeI	CTAG	3 cut(s)	72, 290, 699
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	6 cut(s)	44, 65, 242, 361, 435, 451
MalI	GATC	3 cut(s)	5, 213, 346
MboI	GATC	3 cut(s)	3, 211, 344
MboII	GAAGA	8 cut(s)	44, 115, 213, 346, 440, 559, 601, 715
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	710
MluCI	AATT	2 cut(s)	30, 583
MlyI	GAGTC	4 cut(s)	29, 382, 610, 640
MnlI	CCTC	9 cut(s)	164, 175, 303, 372, 454, 546, 562, 629, 672
Mph1103I	ATGCAT	1 cut(s)	221
MspI	CCGG	2 cut(s)	578, 626
MspR9I	CCNGG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	569
NdeII	GATC	3 cut(s)	3, 211, 344
NlaIV	GGNNCC	2 cut(s)	79, 346
NruI	TCGCGA	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	698
PctI	GAATGC	1 cut(s)	694
PfeI	GAWTC	2 cut(s)	9, 204
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	562, 598, 694, 697
PleI	GAGTC	4 cut(s)	29, 382, 610, 639
PpsI	GAGTC	4 cut(s)	29, 382, 610, 639
Psp124BI	GAGCTC	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	79, 346
PsuI	RGATCY	1 cut(s)	344
RruI	TCGCGA	1 cut(s)	14
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
SacI	GAGCTC	1 cut(s)	710
SapI	GCTCTTC	1 cut(s)	698
SatI	GCNGC	4 cut(s)	561, 597, 693, 696
Sau3AI	GATC	3 cut(s)	3, 211, 344
SchI	GAGTC	4 cut(s)	29, 382, 610, 640
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	710
Sse9I	AATT	2 cut(s)	30, 583
SsiI	CCGC	6 cut(s)	150, 162, 530, 563, 596, 695
SspMI	CTAG	3 cut(s)	72, 290, 699
SstI	GAGCTC	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	2 cut(s)	95, 634
TasI	AATT	2 cut(s)	30, 583
TauI	GCSGC	2 cut(s)	599, 698
TfiI	GAWTC	2 cut(s)	9, 204
TscAI	CASTG	2 cut(s)	45, 462
TseI	GCWGC	2 cut(s)	560, 692
TspDTI	ATGAA	2 cut(s)	560, 701
TspGWI	ACGGA	2 cut(s)	440, 609
TspRI	CASTG	2 cut(s)	45, 462
XagI	CCTNNNNNAGG	1 cut(s)	663
XapI	RAATTY	1 cut(s)	583
XspI	CTAG	3 cut(s)	72, 290, 699
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.