Rmu_sc0009360.1_g000045

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009360.1
OG0003835
Physical Location & Seq
Reverse (-)
133373 .. 133969
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009360.1_g000045.1.cds

Sequence Viewer

Length: 597 bp
atgatacgaatcttaaagattaatcccctaatatctacgcttcagtcttcaagccaccagttccttcaaaggtgctctgtgagtgggactgcaaagggtaagtcgaagacgaagactgcagctcctctgaagcgctcaaagataactacgaaaaaaggttctggagatggtgctcctaaaggtgcaggagggaaaagatatgctgaaagagaaaagttttatgagcaatgcttaagtgcccccatccctgtcaggtacttgacggagaaagagagaaagcgtgaagccaagcgagagaagttgggacttattagcaaagatcgacagcgtgaaattgatatgaagaaaaagaagaagccagaatttcagatctcagaaaaacctacagttattggacctccaggtttggatttgatatcacttggtttggttgatgaggagaaattacgaaaatatgaactgactgctgaagatggccagcggctcgccaaggagtatagcagggtgttgatgaggtgtcaccgggcaaggcaagcagcagaatcaacacttttacgtttgaagaaggaggctgttgggcattgcctgaacatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.35

Weight (kDa)

10.08

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 481
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 3 cut(s) 26, 149, 489
AfaI GTAC 1 cut(s) 257
AfeI AGCGCT 1 cut(s) 134
AflII CTTAAG 1 cut(s) 232
AgsI TTSAA 3 cut(s) 51, 68, 562
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw21I GWGCWC 2 cut(s) 77, 175
Aor51HI AGCGCT 1 cut(s) 134
AoxI GGCC 1 cut(s) 475
ApeKI GCWGC 2 cut(s) 119, 536
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AseI ATTAAT 1 cut(s) 21
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 512
AvaII GGWCC 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 477
BbsI GAAGAC 3 cut(s) 39, 113, 119
Bbv12I GWGCWC 2 cut(s) 77, 175
BbvI GCAGC 2 cut(s) 131, 548
BccI CCATC 3 cut(s) 161, 251, 467
BciT130I CCWGG 1 cut(s) 402
BcnI CCSGG 1 cut(s) 524
BfmI CTRYAG 2 cut(s) 117, 384
BfoI RGCGCY 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 232
BglII AGATCT 1 cut(s) 369
BisI GCNGC 3 cut(s) 120, 482, 537
BlsI GCNGC 3 cut(s) 121, 483, 538
Bme1390I CCNGG 2 cut(s) 402, 524
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmrFI CCNGG 2 cut(s) 402, 524
BpiI GAAGAC 3 cut(s) 39, 113, 119
BpmI CTGGAG 2 cut(s) 183, 384
BpuMI CCSGG 1 cut(s) 524
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 489
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 2 cut(s) 233, 580
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 8
BseMI GCAATG 2 cut(s) 233, 580
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 114, 452
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 2 cut(s) 131, 548
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 477
BsiHKAI GWGCWC 2 cut(s) 77, 175
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 2 cut(s) 100, 318
BsmFI GGGAC 2 cut(s) 100, 318
BsnI GGCC 1 cut(s) 477
Bsp1286I GDGCHC 3 cut(s) 77, 175, 241
Bsp143I GATC 2 cut(s) 319, 369
BspACI CCGC 1 cut(s) 481
BspANI GGCC 1 cut(s) 477
BspCNI CTCAG 1 cut(s) 386
BspMAI CTGCAG 1 cut(s) 121
BspTI CTTAAG 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 233, 580
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 2 cut(s) 319, 369
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 388
BstAFI CTTAAG 1 cut(s) 232
BstC8I GCNNGC 3 cut(s) 479, 486, 534
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 322, 372
BstMBI GATC 2 cut(s) 319, 369
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 400, 522
BstSFI CTRYAG 2 cut(s) 117, 384
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 131, 548
BstV2I GAAGAC 3 cut(s) 39, 113, 119
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuRI GGCC 1 cut(s) 477
BtsCI GGATG 1 cut(s) 243
Cac8I GCNNGC 3 cut(s) 479, 486, 534
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 256
CviJI RGCY 7 cut(s) 54, 122, 287, 358, 477, 484, 572
CviKI_1 RGCY 7 cut(s) 54, 122, 287, 358, 477, 484, 572
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 373
DpnI GATC 2 cut(s) 321, 371
DpnII GATC 2 cut(s) 319, 369
EaeI YGGCCR 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 489
Eco32I GATATC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 395
Eco47III AGCGCT 1 cut(s) 134
Eco57I CTGAAG 3 cut(s) 26, 149, 489
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 489
FaiI YATR 5 cut(s) 201, 222, 341, 456, 498
FaqI GGGAC 2 cut(s) 100, 318
Fnu4HI GCNGC 3 cut(s) 120, 482, 537
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 120, 482, 537
GlaI GCGC 1 cut(s) 134
GluI GCNGC 3 cut(s) 120, 482, 537
GsuI CTGGAG 2 cut(s) 183, 384
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 477
HapII CCGG 1 cut(s) 523
HhaI GCGC 1 cut(s) 135
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 2 cut(s) 9, 542
HpaII CCGG 1 cut(s) 523
HphI GGTGA 1 cut(s) 512
Hpy188I TCNGA 3 cut(s) 129, 369, 376
Hpy188III TCNNGA 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 74, 559
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 3 cut(s) 92, 119, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 1 cut(s) 373
HpySE526I ACGT 1 cut(s) 556
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 319, 369
LmnI GCTCC 2 cut(s) 127, 178
Lsp1109I GCAGC 2 cut(s) 131, 548
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 518
MalI GATC 2 cut(s) 321, 371
MboI GATC 2 cut(s) 319, 369
MboII GAAGA 7 cut(s) 39, 118, 124, 355, 364, 482, 574
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 3 cut(s) 77, 175, 241
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 3 cut(s) 333, 362, 443
MluNI TGGCCA 1 cut(s) 477
MnlI CCTC 6 cut(s) 135, 182, 408, 430, 507, 562
Mox20I TGGCCA 1 cut(s) 477
MscI TGGCCA 1 cut(s) 477
MseI TTAA 3 cut(s) 14, 21, 233
Msp20I TGGCCA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 481
MspCI CTTAAG 1 cut(s) 232
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 2 cut(s) 402, 524
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 1 cut(s) 533
NciI CCSGG 1 cut(s) 524
NdeII GATC 2 cut(s) 319, 369
NmuCI GTSAC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 9, 542
PkrI GCNGC 3 cut(s) 121, 483, 538
PshBI ATTAAT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspPI GGNCC 1 cut(s) 395
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 369
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 14, 21, 233
SatI GCNGC 3 cut(s) 120, 482, 537
Sau3AI GATC 2 cut(s) 319, 369
Sau96I GGNCC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 402, 524
SduI GDGCHC 3 cut(s) 77, 175, 241
SfcI CTRYAG 2 cut(s) 117, 384
SinI GGWCC 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 3 cut(s) 333, 362, 443
SsiI CCGC 1 cut(s) 481
StyD4I CCNGG 2 cut(s) 400, 522
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 104, 322
TasI AATT 3 cut(s) 333, 362, 443
TauI GCSGC 1 cut(s) 484
TfiI GAWTC 2 cut(s) 9, 542
Tru1I TTAA 3 cut(s) 14, 21, 233
Tru9I TTAA 3 cut(s) 14, 21, 233
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 2 cut(s) 119, 536
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 2 cut(s) 356, 471
TspGWI ACGGA 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 395
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.