Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Forward (+)

1803192 .. 1804402

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAAGAAAAAGAATAAGCCAGAATTTCAGATCTCGGAAAAACCAACAGTTATTGGACCTCCTGGTTTGGATTTGATATCACTAGGTTTGGTTGATGAGGAGAAGTTACCAAAATATGAACTGACTGCTGAAGATGGCCAGCGGCTTGCTAAGGAGTATAGCAGGGCTACATTGAGAAGGTTAAGGAAGCTGCACGGAGGAGCAGTGAGAAGGGGAAGCTCAGATAACCAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.82

Weight (kDa)

9.91

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	190, 219
AluI	AGCT	2 cut(s)	190, 219
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	63
BfaI	CTAG	1 cut(s)	83
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	2 cut(s)	143, 191
BlsI	GCNGC	2 cut(s)	144, 192
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
BseBI	CCWGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	234
BseRI	GAGGAG	2 cut(s)	113, 213
BseXI	GCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	233
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	140, 147
BstDEI	CTNAG	2 cut(s)	150, 220
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	140, 147
Cfr13I	GGNCC	1 cut(s)	56
CviJI	RGCY	6 cut(s)	19, 138, 145, 167, 190, 219
CviKI_1	RGCY	6 cut(s)	19, 138, 145, 167, 190, 219
DdeI	CTNAG	2 cut(s)	150, 220
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	78
FaiI	YATR	2 cut(s)	117, 159
Fnu4HI	GCNGC	2 cut(s)	143, 191
Fsp4HI	GCNGC	2 cut(s)	143, 191
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	2 cut(s)	143, 191
HaeIII	GGCC	1 cut(s)	138
Hpy188I	TCNGA	3 cut(s)	30, 37, 223
HpyAV	CCTTC	2 cut(s)	171, 204
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	193
HpyF3I	CTNAG	2 cut(s)	150, 220
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	5 cut(s)	33, 48, 75, 148, 152
Lsp1109I	GCAGC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	16, 143
MflI	RGATCY	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	138
MnlI	CCTC	4 cut(s)	69, 91, 191, 225
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	144, 192
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	143, 191
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	6 cut(s)	61, 88, 182, 192, 221, 236
SgeI	CNNG	9 cut(s)	32, 46, 74, 75, 95, 151, 158, 175, 206
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	1 cut(s)	23
TauI	GCSGC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	17, 132
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	23
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.