FvH4_6g03230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003835
Physical Location & Seq
Forward (+)
1802850 .. 1803146
297 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03230.t1

Sequence Viewer

Length: 297 bp
ATGATACGAATCTTAAAGATTAAGCCCCTAATATCTTTGCTTGAGTCTTCTTCTAGCCACCACTTCCTTCAGAGGTGCTTTGTGAGTGGGACTTCAAAGGGCAAGGCGAAGGTGAAAACTGCAGCCCCGCTGAAGCGCTCAAAGATAACTACGAAAAAGGGTTCTGCAGATGCTGCTCCTAAAGGTGCAGGAGGGAAAAGATATGCTGAAAGAGAAAAGTTTTATGAGCAATGCTTAAGTGCACCTACACCTGTCAGGTACCTGACGGAGAAGGAGAAACAACGTGAAGCCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.89

Weight (kDa)

10.1

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AciI CCGC 1 cut(s) 128
AcuI CTGAAG 2 cut(s) 53, 152
AfaI GTAC 1 cut(s) 260
AfeI AGCGCT 1 cut(s) 137
AflII CTTAAG 1 cut(s) 235
AgsI TTSAA 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 173
Aor51HI AGCGCT 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 122, 173
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 134, 160
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 2 cut(s) 120, 165
BfoI RGCGCY 1 cut(s) 139
BfrI CTTAAG 1 cut(s) 235
BisI GCNGC 2 cut(s) 123, 174
BlsI GCNGC 2 cut(s) 124, 175
BmiI GGNNCC 1 cut(s) 260
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 8
BseMI GCAATG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 2 cut(s) 134, 160
BsgI GTGCAG 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 244
BspACI CCGC 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 260
BspMAI CTGCAG 2 cut(s) 124, 169
BspT107I GGYRCC 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 236
BstAFI CTTAAG 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 173
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstSFI CTRYAG 2 cut(s) 120, 165
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 134, 160
BstV2I GAAGAC 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 259
CviJI RGCY 4 cut(s) 25, 57, 125, 290
CviKI_1 RGCY 4 cut(s) 25, 57, 125, 290
CviQI GTAC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 53, 152
FaiI YATR 2 cut(s) 204, 225
FaqI GGGAC 1 cut(s) 103
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 123, 174
Fsp4HI GCNGC 2 cut(s) 123, 174
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 137
GluI GCNGC 2 cut(s) 123, 174
HaeII RGCGCY 1 cut(s) 139
HhaI GCGC 1 cut(s) 138
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 2 cut(s) 9, 44
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 77, 103, 265
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 4 cut(s) 122, 167, 188, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 283
HspAI GCGC 1 cut(s) 136
KpnI GGTACC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 4 cut(s) 174, 241, 264, 275
Lsp1109I GCAGC 2 cut(s) 134, 160
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 283
MboII GAAGA 2 cut(s) 39, 42
MhlI GDGCHC 1 cut(s) 244
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 2 cut(s) 66, 185
MseI TTAA 3 cut(s) 14, 21, 236
MspA1I CMGCKG 1 cut(s) 130
MspCI CTTAAG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 2 cut(s) 124, 175
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 260
PstI CTGCAG 2 cut(s) 124, 169
PstNI CAGNNNCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 3 cut(s) 14, 21, 236
SatI GCNGC 2 cut(s) 123, 174
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 244
SetI ASST 8 cut(s) 77, 114, 187, 247, 253, 260, 264, 286
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 2 cut(s) 120, 165
SgeI CNNG 8 cut(s) 53, 66, 115, 139, 201, 263, 268, 274
SmlI CTYRAG 2 cut(s) 41, 235
SmoI CTYRAG 2 cut(s) 41, 235
SsiI CCGC 1 cut(s) 128
SspMI CTAG 1 cut(s) 54
TaiI ACGT 1 cut(s) 286
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 3 cut(s) 14, 21, 236
Tru9I TTAA 3 cut(s) 14, 21, 236
TseI GCWGC 2 cut(s) 122, 173
TspGWI ACGGA 1 cut(s) 281
Vha464I CTTAAG 1 cut(s) 235
VneI GTGCAC 1 cut(s) 240
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.