Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

30315023 .. 30317779

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1222200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATACGAATCTTAAAGATTAAACCTGTGACGTCTTTCTTTGAGTCTTCTTCAAGCCATAACTTTCTTCAGAGATGCTCTGTAAGTGGGACGGCAAAGGGTAAATCAAAGACAAAAGCTGCAGGACCACTGAAGCGGTCAAAGATCACTGTGAAAAGGGGTAGTGCAGCCCCTGCTGCTAAAGGTGGAGGAGGTCACATAAGTCCGGCGGAAAAGTTATATGATTCATGCTTAAATGCCCCGACACCTGTTAGGTGGTTACCACCAGTACTGAGAAAACGTGAAATAATGCGAGAGAAGATGGGACTTATTAGCAAAGAGCGACAGCGTGAGATTGAGATGCTGAAGAAAGATAAGGGAAAATTGGGAATCCCAGAAAAACCAACAATTATTGGAACACCTGGTTTGGATTTGATATCACTAGGTTTGGTTGATGTGGAGAAGATACCAAAATATAACCTGACTGTTGAAGACGGTAGAAAGCTTGCAAAGGAGTATAGCAGGGTCTTGATGAGGCGTCACCGTGCAAGGCAGGCAGCAGAGTCCACACTGTTGCGGTTGAAGAAGGAGGCGATTGAGGCATTGCCTGAACATTTGAAAGCAGCAGCATTGGTTCCAGATCTTACCCCGTTCCCAGTAAACCGGTTCATGGCAACTCTGACTCCTCCGATTGAAGGTTATATTGAGAAAGTTAAGGAAGCTGCAAGAAAGAGCAGTGCGAAGGAGAAGCTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.16

Weight (kDa)

10.27

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AciI	CCGC	3 cut(s)	136, 209, 556
AcuI	CTGAAG	3 cut(s)	53, 152, 365
AcyI	GRCGYC	2 cut(s)	32, 517
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	649, 674
AgeI	ACCGGT	1 cut(s)	642
AgsI	TTSAA	5 cut(s)	54, 470, 562, 598, 674
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	4 cut(s)	119, 484, 701, 730
AluI	AGCT	4 cut(s)	119, 484, 701, 730
AlwNI	CAGNNNCTG	1 cut(s)	173
ApeKI	GCWGC	7 cut(s)	119, 167, 176, 536, 602, 605, 701
AsiGI	ACCGGT	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	39, 477
BbvI	GCAGC	7 cut(s)	106, 163, 179, 548, 614, 617, 688
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	402
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	7 cut(s)	120, 168, 177, 537, 603, 606, 702
BlsI	GCNGC	7 cut(s)	121, 169, 178, 538, 604, 607, 703
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	402
BmrI	ACTGGG	1 cut(s)	629
BmsI	GCATC	2 cut(s)	65, 330
BmuI	ACTGGG	1 cut(s)	629
BpiI	GAAGAC	2 cut(s)	39, 477
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	32, 517
BsaWI	WCCGGW	1 cut(s)	642
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	649, 674
Bse118I	RCCGGY	1 cut(s)	642
Bse1I	ACTGG	2 cut(s)	266, 635
Bse3DI	GCAATG	1 cut(s)	581
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	649, 674
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	266, 635
BseRI	GAGGAG	2 cut(s)	204, 654
BseXI	GCAGC	7 cut(s)	106, 163, 179, 548, 614, 617, 688
BsgI	GTGCAG	1 cut(s)	186
BshTI	ACCGGT	1 cut(s)	642
BsiSI	CCGG	2 cut(s)	206, 643
BslFI	GGGAC	2 cut(s)	103, 318
BslI	CCNNNNNNNGG	2 cut(s)	649, 674
BsmFI	GGGAC	2 cut(s)	103, 318
Bsp143I	GATC	2 cut(s)	144, 619
BspACI	CCGC	3 cut(s)	136, 209, 556
BspCNI	CTCAG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	581
BsrFI	RCCGGY	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	266, 635
BssAI	RCCGGY	1 cut(s)	642
BssMI	GATC	2 cut(s)	144, 619
BssNI	GRCGYC	2 cut(s)	32, 517
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	5 cut(s)	151, 466, 476, 524, 552
BstACI	GRCGYC	2 cut(s)	32, 517
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	486, 534
BstDEI	CTNAG	2 cut(s)	272, 731
BstEII	GGTNACC	1 cut(s)	258
BstKTI	GATC	2 cut(s)	147, 622
BstMBI	GATC	2 cut(s)	144, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 176, 533, 578
BstNI	CCWGG	1 cut(s)	402
BstPI	GGTNACC	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	7 cut(s)	106, 163, 179, 548, 614, 617, 688
BstV2I	GAAGAC	2 cut(s)	39, 477
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	4 cut(s)	128, 147, 548, 721
Cac8I	GCNNGC	2 cut(s)	486, 534
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	642
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	506
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	269
CspAI	ACCGGT	1 cut(s)	642
CviAII	CATG	2 cut(s)	228, 649
CviJI	RGCY	6 cut(s)	57, 119, 170, 484, 701, 730
CviKI_1	RGCY	6 cut(s)	57, 119, 170, 484, 701, 730
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	2 cut(s)	272, 731
DpnI	GATC	2 cut(s)	146, 621
DpnII	GATC	2 cut(s)	144, 619
EciI	GGCGGA	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	3 cut(s)	53, 152, 365
Eco91I	GGTNACC	1 cut(s)	258
EcoO65I	GGTNACC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	417
FaeI	CATG	2 cut(s)	231, 652
FaiI	YATR	9 cut(s)	60, 200, 220, 222, 229, 456, 498, 650, 681
FaqI	GGGAC	2 cut(s)	103, 318
FatI	CATG	2 cut(s)	227, 648
Fnu4HI	GCNGC	7 cut(s)	120, 168, 177, 537, 603, 606, 702
Fsp4HI	GCNGC	7 cut(s)	120, 168, 177, 537, 603, 606, 702
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	7 cut(s)	120, 168, 177, 537, 603, 606, 702
HapII	CCGG	2 cut(s)	206, 643
HgaI	GACGC	1 cut(s)	506
Hin1I	GRCGYC	2 cut(s)	32, 517
Hin1II	CATG	2 cut(s)	231, 652
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	6 cut(s)	9, 44, 224, 369, 542, 661
HpaII	CCGG	2 cut(s)	206, 643
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	546, 640
Hpy188I	TCNGA	4 cut(s)	72, 660, 669, 734
Hpy188III	TCNNGA	2 cut(s)	508, 617
Hpy8I	GTNNAC	2 cut(s)	546, 640
HpyAV	CCTTC	3 cut(s)	559, 668, 715
HpyCH4III	ACNGT	5 cut(s)	151, 466, 476, 524, 552
HpyCH4IV	ACGT	2 cut(s)	32, 280
HpyCH4V	TGCA	5 cut(s)	122, 167, 488, 527, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 176, 533, 578
HpyF3I	CTNAG	2 cut(s)	272, 731
HpySE526I	ACGT	2 cut(s)	32, 280
Hsp92I	GRCGYC	2 cut(s)	32, 517
Hsp92II	CATG	2 cut(s)	231, 652
Kzo9I	GATC	2 cut(s)	144, 619
Lsp1109I	GCAGC	7 cut(s)	106, 163, 179, 548, 614, 617, 688
LweI	GCATC	2 cut(s)	65, 330
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	32, 280
MaeIII	GTNAC	4 cut(s)	28, 194, 258, 518
MalI	GATC	2 cut(s)	146, 621
MboI	GATC	2 cut(s)	144, 619
MboII	GAAGA	8 cut(s)	39, 42, 59, 310, 358, 454, 482, 574
MflI	RGATCY	1 cut(s)	619
MluCI	AATT	2 cut(s)	362, 387
MlyI	GAGTC	3 cut(s)	53, 551, 655
MnlI	CCTC	6 cut(s)	182, 185, 507, 562, 571, 675
MseI	TTAA	4 cut(s)	14, 21, 233, 693
MspI	CCGG	2 cut(s)	206, 643
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	4 cut(s)	173, 176, 533, 578
NdeII	GATC	2 cut(s)	144, 619
NlaIII	CATG	2 cut(s)	231, 652
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	3 cut(s)	28, 194, 518
PfeI	GAWTC	3 cut(s)	9, 224, 369
PinAI	ACCGGT	1 cut(s)	642
PkrI	GCNGC	7 cut(s)	121, 169, 178, 538, 604, 607, 703
PleI	GAGTC	3 cut(s)	52, 550, 655
PpsI	GAGTC	3 cut(s)	52, 550, 655
Psp6I	CCWGG	1 cut(s)	400
PspEI	GGTNACC	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SaqAI	TTAA	4 cut(s)	14, 21, 233, 693
SatI	GCNGC	7 cut(s)	120, 168, 177, 537, 603, 606, 702
Sau3AI	GATC	2 cut(s)	144, 619
Sau96I	GGNCC	1 cut(s)	125
ScaI	AGTACT	1 cut(s)	270
SchI	GAGTC	3 cut(s)	53, 551, 655
ScrFI	CCNGG	1 cut(s)	402
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	65, 330
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	2 cut(s)	362, 387
SsiI	CCGC	3 cut(s)	136, 209, 556
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	5 cut(s)	151, 466, 476, 524, 552
TaiI	ACGT	2 cut(s)	35, 283
TasI	AATT	2 cut(s)	362, 387
TatI	WGTACW	1 cut(s)	268
TfiI	GAWTC	3 cut(s)	9, 224, 369
Tru1I	TTAA	4 cut(s)	14, 21, 233, 693
Tru9I	TTAA	4 cut(s)	14, 21, 233, 693
TscAI	CASTG	4 cut(s)	135, 154, 555, 721
TseFI	GTSAC	3 cut(s)	28, 194, 518
TseI	GCWGC	7 cut(s)	119, 167, 176, 536, 602, 605, 701
Tsp45I	GTSAC	3 cut(s)	28, 194, 518
TspDTI	ATGAA	2 cut(s)	216, 637
TspRI	CASTG	4 cut(s)	135, 154, 555, 721
VpaK11BI	GGWCC	1 cut(s)	125
XspI	CTAG	1 cut(s)	422
ZraI	GACGTC	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.