Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

29472979 .. 29473522

Gene Structure 544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G341300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTGAAGATAGGCAAGGAGAAATTGGGCATCCCAGAAAAGCCAACGATTCTTGGAACGCCCGGCTTGGATTTGATATCGCTGGGTTTGGTTGATGCGGATAAGTTACCGAAATATAACCTCACTGTTGAAGATGGCCGGAGGCTTGCCAAGGAGTACAGTAGGGTTTTGATGAGACGGCACAGGGCAAGGCAGGCGGCGGAGTCCACGCTGTTGAGGTTGAAGAAGGAGGCGATTGAGGCATTGCCTGAGCATTTGAAAGCAGCAGCCTTGGTGCCGGATCTTTCTAAGTTCCCAGAAAATCGGTTCATGGCAACTCTGACGCCTCCCATTGAAGGCTACATTGAGAGGGTTAAGGAGGCAGCTAGGAAGAGCTCTGAGAAGGGGAAGCTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.81

Weight (kDa)

9.89

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AciI	CCGC	3 cut(s)	98, 197, 200
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	131, 223, 259, 335
AluBI	AGCT	3 cut(s)	365, 375, 391
AluI	AGCT	3 cut(s)	365, 375, 391
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	263, 266, 362
AsuC2I	CCSGG	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	275, 278, 374
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	366
BisI	GCNGC	4 cut(s)	198, 264, 267, 363
BlsI	GCNGC	4 cut(s)	199, 265, 268, 364
Bme1390I	CCNGG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	39, 85
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	150, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	150, 270
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	240, 369
BseXI	GCAGC	3 cut(s)	275, 278, 374
BseYI	CCCAGC	1 cut(s)	82
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	63, 139, 278
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	98, 197, 200
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	241, 370
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	150, 270
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	2 cut(s)	150, 270
Bst4CI	ACNGT	2 cut(s)	127, 161
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	147, 195
BstDEI	CTNAG	4 cut(s)	249, 288, 378, 392
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 239
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	3 cut(s)	275, 278, 374
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	147, 195
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	9 cut(s)	43, 66, 138, 145, 269, 339, 365, 375, 391
CviKI_1	RGCY	9 cut(s)	43, 66, 138, 145, 269, 339, 365, 375, 391
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	4 cut(s)	249, 288, 378, 392
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	375
Eco130I	CCWWGG	2 cut(s)	150, 270
Eco24I	GRGCYC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	26
EcoICRI	GAGCTC	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	150, 270
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	2 cut(s)	150, 270
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	1 cut(s)	313
FaiI	YATR	2 cut(s)	117, 311
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	198, 264, 267, 363
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	4 cut(s)	198, 264, 267, 363
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	4 cut(s)	198, 264, 267, 363
GsaI	CCCAGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	3 cut(s)	63, 139, 278
HgaI	GACGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	313
HinfI	GANTC	2 cut(s)	49, 203
HpaII	CCGG	3 cut(s)	63, 139, 278
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	321, 379, 395
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	3 cut(s)	220, 329, 376
HpyCH4III	ACNGT	2 cut(s)	127, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 239
HpyF3I	CTNAG	4 cut(s)	249, 288, 378, 392
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	280
LguI	GCTCTTC	1 cut(s)	365
LpnPI	CCDG	9 cut(s)	48, 68, 76, 152, 169, 179, 261, 291, 309
Lsp1109I	GCAGC	3 cut(s)	275, 278, 374
LweI	GCATC	2 cut(s)	39, 85
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	4 cut(s)	19, 143, 235, 382
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	8 cut(s)	131, 135, 210, 223, 232, 336, 342, 352
MseI	TTAA	1 cut(s)	354
MspI	CCGG	3 cut(s)	63, 139, 278
MspR9I	CCNGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	194, 239
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	199, 265, 268, 364
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	198, 264, 267, 363
Sau3AI	GATC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	5 cut(s)	123, 221, 367, 377, 393
SfaNI	GCATC	2 cut(s)	39, 85
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	3 cut(s)	98, 197, 200
SspMI	CTAG	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	2 cut(s)	150, 270
TaaI	ACNGT	2 cut(s)	127, 161
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	3 cut(s)	263, 266, 362
TspDTI	ATGAA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	130
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.