FvH4_6g03270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003835
Physical Location & Seq
Forward (+)
1815972 .. 1819396
3425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03270.t1

Sequence Viewer

Length: 741 bp
ATGATACGAATCTTAAAGATTAAGCCCCTAATATCTTTGCTTGAGTCTTCTTCTAGCCACCACTTCCTTCAGAGGTGCTCTGTGAGTGGGACTTCAAAGGGCAAGGCGAAGGTGAAAACTGCAGCCCCGCTGAAGCGCTCAAAGATAACTACGAAAAAGGGTTCTGCAGATGCTGCTCCTAAAGGTGCAGGAGGGAAAAGATATGCTGAAAGAGAAAAGTTTTATGAGCAATGCTTAAGTGCACCTACACCTGTCAGGTACCTGACGGAGAAGGAGAGACAACGTGAAGCCGAGCGAGCGAAGTTGGGACTTATTAGCAAAGATCGACAGCGAGAAATTGATATGAAGAAAAAGAATAAGCCAGAATTTCAGATCTCGGAAAAACCAACAGTTATTGGACCTCCTGGTTTGGATTTGATATCACTAGGTTTGGTTGATGAGGAGAAGTTACCAAAATATGAATTGACTGCTGAAGATGGCCAGCGGCTTGCTAAGGAGTATAGCAGGGTGTTGATGAGGCGTCACCGGGCAAGGCAAGCAGCAGAGTCAACACTTTTGCGTTTGAAGAAGGAGGCTATTGAGGCATTGCCTGAACATTTGAAAGCAGCAGCATTGGTGCCAGACATGACACCATTCCCTACAGATCGGTTCATGGCAACTCTGACTCCTCCAATTGAAGGCTACATTGAGAAGGTTAAGGAAGCTGCACGGAGGAGCAGTGAGAAGGGGAAGCTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.67

Weight (kDa)

9.98

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 2 cut(s) 258, 616
AciI CCGC 2 cut(s) 128, 484
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 3 cut(s) 53, 152, 492
AcyI GRCGYC 1 cut(s) 520
AfaI GTAC 1 cut(s) 260
AfeI AGCGCT 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 677
AflII CTTAAG 1 cut(s) 235
AgsI TTSAA 4 cut(s) 96, 565, 601, 677
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 2 cut(s) 704, 733
AluI AGCT 2 cut(s) 704, 733
Alw21I GWGCWC 2 cut(s) 80, 244
Alw26I GTCTC 1 cut(s) 271
Alw44I GTGCAC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 173
Aor51HI AGCGCT 1 cut(s) 137
AoxI GGCC 1 cut(s) 478
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 6 cut(s) 122, 173, 539, 605, 608, 704
ApoI RAATTY 1 cut(s) 365
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 124, 515
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 480
BanI GGYRCC 2 cut(s) 258, 616
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 2 cut(s) 80, 244
BbvI GCAGC 6 cut(s) 134, 160, 551, 617, 620, 691
BccI CCATC 1 cut(s) 470
BciT130I CCWGG 1 cut(s) 405
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 2 cut(s) 54, 425
BfmI CTRYAG 3 cut(s) 120, 165, 639
BfoI RGCGCY 1 cut(s) 139
BfrI CTTAAG 1 cut(s) 235
BglII AGATCT 1 cut(s) 372
BisI GCNGC 7 cut(s) 123, 174, 485, 540, 606, 609, 705
BlsI GCNGC 7 cut(s) 124, 175, 486, 541, 607, 610, 706
Bme1390I CCNGG 2 cut(s) 405, 527
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 260, 618
BmrFI CCNGG 2 cut(s) 405, 527
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 520
BsaXI ACNNNNNCTCC 4 cut(s) 649, 679, 703, 733
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse3DI GCAATG 2 cut(s) 236, 584
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 405
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMI GCAATG 2 cut(s) 236, 584
BseRI GAGGAG 3 cut(s) 455, 657, 727
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 6 cut(s) 134, 160, 551, 617, 620, 691
BsgI GTGCAG 2 cut(s) 207, 690
BshFI GGCC 1 cut(s) 480
BshNI GGYRCC 2 cut(s) 258, 616
BsiHKAI GWGCWC 2 cut(s) 80, 244
BsiSI CCGG 1 cut(s) 526
BslFI GGGAC 2 cut(s) 103, 321
BslI CCNNNNNNNGG 1 cut(s) 677
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 2 cut(s) 103, 321
BsnI GGCC 1 cut(s) 480
Bsp1286I GDGCHC 2 cut(s) 80, 244
Bsp143I GATC 3 cut(s) 322, 372, 643
BspACI CCGC 2 cut(s) 128, 484
BspANI GGCC 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 260, 618
BspMAI CTGCAG 2 cut(s) 124, 169
BspT107I GGYRCC 2 cut(s) 258, 616
BspTI CTTAAG 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 236, 584
BssMI GATC 3 cut(s) 322, 372, 643
BssNI GRCGYC 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 391
BstACI GRCGYC 1 cut(s) 520
BstAFI CTTAAG 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 4 cut(s) 297, 482, 489, 537
BstDEI CTNAG 2 cut(s) 492, 734
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 3 cut(s) 325, 375, 646
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 3 cut(s) 322, 372, 643
BstMWI GCNNNNNNNGC 4 cut(s) 173, 296, 536, 581
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 403, 525
BstSFI CTRYAG 3 cut(s) 120, 165, 639
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 6 cut(s) 134, 160, 551, 617, 620, 691
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 1 cut(s) 480
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 1 cut(s) 724
Cac8I GCNNGC 4 cut(s) 297, 482, 489, 537
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 625, 652
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 492, 734
DpnI GATC 3 cut(s) 324, 374, 645
DpnII GATC 3 cut(s) 322, 372, 643
EaeI YGGCCR 1 cut(s) 478
Eco32I GATATC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 398
Eco47III AGCGCT 1 cut(s) 137
Eco57I CTGAAG 3 cut(s) 53, 152, 492
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 420
FaeI CATG 2 cut(s) 628, 655
FaiI YATR 7 cut(s) 204, 225, 344, 459, 501, 626, 653
FaqI GGGAC 2 cut(s) 103, 321
FatI CATG 2 cut(s) 624, 651
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 7 cut(s) 123, 174, 485, 540, 606, 609, 705
Fsp4HI GCNGC 7 cut(s) 123, 174, 485, 540, 606, 609, 705
FspBI CTAG 2 cut(s) 54, 425
GlaI GCGC 1 cut(s) 137
GluI GCNGC 7 cut(s) 123, 174, 485, 540, 606, 609, 705
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 1 cut(s) 480
HapII CCGG 1 cut(s) 526
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 520
Hin1II CATG 2 cut(s) 628, 655
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 4 cut(s) 9, 44, 545, 664
HpaII CCGG 1 cut(s) 526
HphI GGTGA 2 cut(s) 124, 515
Hpy166II GTNNAC 2 cut(s) 242, 549
Hpy188I TCNGA 5 cut(s) 72, 372, 379, 663, 737
Hpy8I GTNNAC 2 cut(s) 242, 549
HpyAV CCTTC 7 cut(s) 77, 103, 265, 562, 671, 685, 718
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 5 cut(s) 122, 167, 188, 242, 707
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 296, 536, 581
HpyF3I CTNAG 2 cut(s) 492, 734
HpySE526I ACGT 1 cut(s) 283
Hsp92I GRCGYC 1 cut(s) 520
Hsp92II CATG 2 cut(s) 628, 655
HspAI GCGC 1 cut(s) 136
KpnI GGTACC 1 cut(s) 262
Kzo9I GATC 3 cut(s) 322, 372, 643
LmnI GCTCC 2 cut(s) 181, 714
Lsp1109I GCAGC 6 cut(s) 134, 160, 551, 617, 620, 691
LweI GCATC 1 cut(s) 160
MaeI CTAG 2 cut(s) 54, 425
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 447, 521
MalI GATC 3 cut(s) 324, 374, 645
MboI GATC 3 cut(s) 322, 372, 643
MboII GAAGA 5 cut(s) 39, 42, 358, 485, 577
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 80, 244
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 4 cut(s) 336, 365, 461, 672
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 3 cut(s) 53, 554, 658
MnlI CCTC 9 cut(s) 66, 185, 411, 433, 510, 565, 574, 678, 705
Mox20I TGGCCA 1 cut(s) 480
MscI TGGCCA 1 cut(s) 480
MseI TTAA 4 cut(s) 14, 21, 236, 696
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 130, 484
MspCI CTTAAG 1 cut(s) 235
MspI CCGG 1 cut(s) 526
MspR9I CCNGG 2 cut(s) 405, 527
MunI CAATTG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 4 cut(s) 173, 296, 536, 581
NciI CCSGG 1 cut(s) 527
NdeII GATC 3 cut(s) 322, 372, 643
NlaIII CATG 2 cut(s) 628, 655
NlaIV GGNNCC 2 cut(s) 260, 618
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 7 cut(s) 124, 175, 486, 541, 607, 610, 706
PleI GAGTC 3 cut(s) 52, 553, 658
PpsI GAGTC 3 cut(s) 52, 553, 658
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 260, 618
PspPI GGNCC 1 cut(s) 398
PstI CTGCAG 2 cut(s) 124, 169
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 4 cut(s) 14, 21, 236, 696
SatI GCNGC 7 cut(s) 123, 174, 485, 540, 606, 609, 705
Sau3AI GATC 3 cut(s) 322, 372, 643
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 3 cut(s) 53, 554, 658
ScrFI CCNGG 2 cut(s) 405, 527
SduI GDGCHC 2 cut(s) 80, 244
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 3 cut(s) 120, 165, 639
SinI GGWCC 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 41, 235
SmoI CTYRAG 2 cut(s) 41, 235
Sse9I AATT 4 cut(s) 336, 365, 461, 672
SsiI CCGC 2 cut(s) 128, 484
SspMI CTAG 2 cut(s) 54, 425
StyD4I CCNGG 2 cut(s) 403, 525
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 325
TasI AATT 4 cut(s) 336, 365, 461, 672
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 4 cut(s) 14, 21, 236, 696
Tru9I TTAA 4 cut(s) 14, 21, 236, 696
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 6 cut(s) 122, 173, 539, 605, 608, 704
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 3 cut(s) 359, 474, 640
TspGWI ACGGA 2 cut(s) 281, 724
TspRI CASTG 1 cut(s) 724
Vha464I CTTAAG 1 cut(s) 235
VneI GTGCAC 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 365
XspI CTAG 2 cut(s) 54, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.