Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Forward (+)

2503824 .. 2505365

Gene Structure 1542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG038400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATACGAATCTTAAAGATTAAGCCCCTAATATCTACACTTGAGTCTTCAAGCCACCAGTTCCTTCAAAGGTGCTCTGTGAGTGGGACTGCAAAGGGTAAGTCGAAGACGAAGACTGCAGCTCCTCTGAAGCGCTCAAAGATAACTACGAAAAAAGGTTCTGCAGATGGTGCTCCTAAAGGTGCAGGAGGAAAAAGATATGCTGAAAGAGAAAAGTTTTATGAGCAATGCTTAAGTGCCCCCACCCCTGTCAGGTACTTGACAGAGAAAGAGAGAAAGCGTGAAGCCGAGCGAGAGAAGTTGGGACTTATTAGCAAAGATCGACAGCGTGAAATTGATATGAAGAAAAAGAAGAAGCCAGAATTTCAGATCTCAGAAAAACCAACAGTTATTGGACCTCCGGGTTTGGATTTGATATCACTTGGTTTGGTTGATGAGGAGGAATTACCAAAATATGAACTGACTGCTGAAGATGGCCAGCGGCTCGCAAAGGAGTATAGTAGGGTGTTGATGAGGCGTCACCGGGCAAGGCAAGCAGCAGAATCCACACTTTTGCGTTTGAAGAAGGAGGCTATTGAGGCATTGCCTGAACATTTGAAAGAGGCAGCATTGGCTACATTGAGAAGGTCAAGGAAGCTGCAAGGAGGAGCAGTGAGAAGGGGAAGCTCAGATGACCAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.59

Weight (kDa)

10.1

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	149, 489
AcyI	GRCGYC	1 cut(s)	517
AfaI	GTAC	1 cut(s)	257
AfeI	AGCGCT	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflII	CTTAAG	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	51, 68, 562, 598
AluBI	AGCT	3 cut(s)	122, 637, 666
AluI	AGCT	3 cut(s)	122, 637, 666
Alw21I	GWGCWC	2 cut(s)	77, 175
Aor51HI	AGCGCT	1 cut(s)	134
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	4 cut(s)	119, 536, 605, 637
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	395
AsuC2I	CCSGG	2 cut(s)	402, 524
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	477
BbsI	GAAGAC	3 cut(s)	39, 113, 119
Bbv12I	GWGCWC	2 cut(s)	77, 175
BbvI	GCAGC	4 cut(s)	131, 548, 617, 624
BccI	CCATC	2 cut(s)	161, 467
BcnI	CCSGG	2 cut(s)	402, 524
BfmI	CTRYAG	2 cut(s)	117, 162
BfoI	RGCGCY	1 cut(s)	136
BfrI	CTTAAG	1 cut(s)	232
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	5 cut(s)	120, 482, 537, 606, 638
BlsI	GCNGC	5 cut(s)	121, 483, 538, 607, 639
Bme1390I	CCNGG	2 cut(s)	402, 524
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	402, 524
BpiI	GAAGAC	3 cut(s)	39, 113, 119
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	402, 524
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	517
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 636, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	2 cut(s)	233, 581
Bse8I	GATNNNNATC	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	2 cut(s)	233, 581
BseMII	CTCAG	2 cut(s)	387, 681
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	3 cut(s)	114, 452, 660
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	4 cut(s)	131, 548, 617, 624
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	477
BsiHKAI	GWGCWC	2 cut(s)	77, 175
BsiSI	CCGG	2 cut(s)	401, 523
BslFI	GGGAC	2 cut(s)	100, 318
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	100, 318
BsnI	GGCC	1 cut(s)	477
Bsp1286I	GDGCHC	3 cut(s)	77, 175, 241
Bsp143I	GATC	2 cut(s)	319, 369
BspACI	CCGC	1 cut(s)	481
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	2 cut(s)	386, 680
BspMAI	CTGCAG	2 cut(s)	121, 166
BspTI	CTTAAG	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	233, 581
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	319, 369
BssNI	GRCGYC	1 cut(s)	517
Bst4CI	ACNGT	1 cut(s)	388
BstACI	GRCGYC	1 cut(s)	517
BstAFI	CTTAAG	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	479, 486, 534
BstDEI	CTNAG	2 cut(s)	373, 667
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	322, 372
BstMBI	GATC	2 cut(s)	319, 369
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 533, 578, 611
BstSCI	CCNGG	2 cut(s)	400, 522
BstSFI	CTRYAG	2 cut(s)	117, 162
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	4 cut(s)	131, 548, 617, 624
BstV2I	GAAGAC	3 cut(s)	39, 113, 119
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	477
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	3 cut(s)	479, 486, 534
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	256
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	373, 667
DpnI	GATC	2 cut(s)	321, 371
DpnII	GATC	2 cut(s)	319, 369
EaeI	YGGCCR	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	395
Eco47III	AGCGCT	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	149, 489
EcoRV	GATATC	1 cut(s)	417
FaiI	YATR	5 cut(s)	201, 222, 341, 456, 498
FaqI	GGGAC	2 cut(s)	100, 318
Fnu4HI	GCNGC	5 cut(s)	120, 482, 537, 606, 638
Fsp4HI	GCNGC	5 cut(s)	120, 482, 537, 606, 638
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	5 cut(s)	120, 482, 537, 606, 638
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	2 cut(s)	401, 523
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	517
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	9, 44, 542
HpaII	CCGG	2 cut(s)	401, 523
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	4 cut(s)	129, 369, 376, 670
HpyAV	CCTTC	4 cut(s)	74, 559, 618, 651
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	5 cut(s)	92, 119, 164, 185, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 533, 578, 611
HpyF3I	CTNAG	2 cut(s)	373, 667
Hsp92I	GRCGYC	1 cut(s)	517
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	319, 369
LmnI	GCTCC	3 cut(s)	127, 178, 647
LpnPI	CCDG	9 cut(s)	71, 171, 238, 261, 372, 414, 491, 536, 600
Lsp1109I	GCAGC	4 cut(s)	131, 548, 617, 624
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	2 cut(s)	321, 371
MboI	GATC	2 cut(s)	319, 369
MboII	GAAGA	7 cut(s)	39, 118, 124, 355, 364, 482, 574
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	3 cut(s)	77, 175, 241
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	3 cut(s)	333, 362, 443
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	53
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	14, 21, 233
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	481
MspCI	CTTAAG	1 cut(s)	232
MspI	CCGG	2 cut(s)	401, 523
MspR9I	CCNGG	2 cut(s)	402, 524
MwoI	GCNNNNNNNGC	4 cut(s)	170, 533, 578, 611
NciI	CCSGG	2 cut(s)	402, 524
NdeII	GATC	2 cut(s)	319, 369
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	9, 542
PkrI	GCNGC	5 cut(s)	121, 483, 538, 607, 639
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	2 cut(s)	121, 166
PsuI	RGATCY	1 cut(s)	369
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	14, 21, 233
SatI	GCNGC	5 cut(s)	120, 482, 537, 606, 638
Sau3AI	GATC	2 cut(s)	319, 369
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	402, 524
SduI	GDGCHC	3 cut(s)	77, 175, 241
SfcI	CTRYAG	2 cut(s)	117, 162
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	41, 232
SmoI	CTYRAG	2 cut(s)	41, 232
Sse9I	AATT	3 cut(s)	333, 362, 443
SsiI	CCGC	1 cut(s)	481
StyD4I	CCNGG	2 cut(s)	400, 522
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	2 cut(s)	104, 322
TasI	AATT	3 cut(s)	333, 362, 443
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	2 cut(s)	9, 542
Tru1I	TTAA	3 cut(s)	14, 21, 233
Tru9I	TTAA	3 cut(s)	14, 21, 233
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	4 cut(s)	119, 536, 605, 637
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	2 cut(s)	356, 471
TspRI	CASTG	1 cut(s)	657
Vha464I	CTTAAG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.