Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000164

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

293486 .. 295868

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_164G00436350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATACGAATCTTAAAGATTAAGCCCCTAATATCTATGCTTGAATCTTCTTCAAGCCACCAGTTCCTTCAGAGGTGCCCTGTGAGTGGGACTGCAAAGGGTAAGTCGAAGACGAAAACTGCAGCGCCTCTGAAGCGCTCAAAGATAACTACGAAAAAAGGTTCTGGAGATGGTGCTCCTAAAGGTGCAGGAGGAAAAAGATATGCTGAAAGAGAAAAGTTTTATGAGCAATGCTTAAGTGCCCCCACCCCTGTCAGGTACTTGACAGAGAAAGAGAGAAAGCGTGAAGCCGAGCGAGAGAAGTTGGGACTTATTAGCAAAGATCGACAGCGTGAAATTGATATGAAGAAAAAGAAGAAGCCAGAATTTCAGATCTCAGAAAAACCAACAGTTATTGGACCTCCGGGTTTGGATTTGATATCACTTGGTTTGGTTGATGAGGAGGAATTACCAAAATATGAACTGACTGCTGAAGATGGCCAGCGGCTCGCAAAGGAGTATAGTAGGGTGTTGATGAGGCGTCACCGGGCAAGGCAAGCAGCAGAATCCACACTTTTGCGTTTGAAGAAGGAGGCTATTGAGGCATTGCCTGAACATTTGAAAGAGGCAGCATTGGTGCCGGACATGACTCCATTCCCAACAGATCGTTTCATGGCAACTCTGACTCCTCCAATTGAAGGCTACATTGAGAAGGTCAAGGAAGCTGCAAGGAGGAGCAGTGAGAAGGGGAAGCTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.8

Weight (kDa)

9.87

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	75, 616
AciI	CCGC	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	3 cut(s)	53, 152, 492
AcyI	GRCGYC	1 cut(s)	520
AfaI	GTAC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	86, 255, 677
AflII	CTTAAG	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	44, 54, 565, 601, 677
AluBI	AGCT	2 cut(s)	704, 733
AluI	AGCT	2 cut(s)	704, 733
Alw21I	GWGCWC	1 cut(s)	178
Aor51HI	AGCGCT	1 cut(s)	137
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	4 cut(s)	122, 539, 608, 704
ApoI	RAATTY	1 cut(s)	365
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspLEI	GCGC	2 cut(s)	127, 138
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	405, 527
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	2 cut(s)	80, 244
BalI	TGGCCA	1 cut(s)	480
BanI	GGYRCC	2 cut(s)	75, 616
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	134, 551, 620, 691
BccI	CCATC	2 cut(s)	164, 470
BcnI	CCSGG	2 cut(s)	405, 527
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	2 cut(s)	128, 139
BfrI	CTTAAG	1 cut(s)	235
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	5 cut(s)	123, 485, 540, 609, 705
BlsI	GCNGC	5 cut(s)	124, 486, 541, 610, 706
Bme1390I	CCNGG	2 cut(s)	405, 527
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	77, 618
BmrFI	CCNGG	2 cut(s)	405, 527
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	405, 527
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	520
BsaXI	ACNNNNNCTCC	4 cut(s)	649, 679, 703, 733
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 255, 677
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	236, 584
Bse8I	GATNNNNATC	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	86, 255, 677
BseMI	GCAATG	2 cut(s)	236, 584
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	3 cut(s)	455, 657, 727
BseSI	GKGCMC	2 cut(s)	80, 244
BseXI	GCAGC	4 cut(s)	134, 551, 620, 691
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	480
BshNI	GGYRCC	2 cut(s)	75, 616
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	3 cut(s)	404, 526, 620
BslFI	GGGAC	2 cut(s)	103, 321
BslI	CCNNNNNNNGG	3 cut(s)	86, 255, 677
BsmFI	GGGAC	2 cut(s)	103, 321
BsnI	GGCC	1 cut(s)	480
Bsp1286I	GDGCHC	3 cut(s)	80, 178, 244
Bsp143I	GATC	3 cut(s)	322, 372, 643
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	389
BspLI	GGNNCC	2 cut(s)	77, 618
BspMAI	CTGCAG	1 cut(s)	124
BspT107I	GGYRCC	2 cut(s)	75, 616
BspTI	CTTAAG	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	236, 584
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	322, 372, 643
BssNI	GRCGYC	1 cut(s)	520
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	520
BstAFI	CTTAAG	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	482, 489, 537
BstDEI	CTNAG	2 cut(s)	376, 734
BstH2I	RGCGCY	2 cut(s)	128, 139
BstHHI	GCGC	2 cut(s)	127, 138
BstKTI	GATC	3 cut(s)	325, 375, 646
BstMBI	GATC	3 cut(s)	322, 372, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 536, 581
BstSCI	CCNGG	2 cut(s)	403, 525
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	2 cut(s)	80, 244
BstV1I	GCAGC	4 cut(s)	134, 551, 620, 691
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	1 cut(s)	724
Cac8I	GCNNGC	3 cut(s)	482, 489, 537
CfoI	GCGC	2 cut(s)	127, 138
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	2 cut(s)	625, 652
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	376, 734
DpnI	GATC	3 cut(s)	324, 374, 645
DpnII	GATC	3 cut(s)	322, 372, 643
EaeI	YGGCCR	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	398
Eco47III	AGCGCT	1 cut(s)	137
Eco57I	CTGAAG	3 cut(s)	53, 152, 492
EcoRV	GATATC	1 cut(s)	420
FaeI	CATG	2 cut(s)	628, 655
FaiI	YATR	8 cut(s)	38, 204, 225, 344, 459, 501, 626, 653
FaqI	GGGAC	2 cut(s)	103, 321
FatI	CATG	2 cut(s)	624, 651
Fnu4HI	GCNGC	5 cut(s)	123, 485, 540, 609, 705
Fsp4HI	GCNGC	5 cut(s)	123, 485, 540, 609, 705
GlaI	GCGC	2 cut(s)	126, 137
GluI	GCNGC	5 cut(s)	123, 485, 540, 609, 705
GsuI	CTGGAG	1 cut(s)	186
HaeII	RGCGCY	2 cut(s)	128, 139
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	3 cut(s)	404, 526, 620
HgaI	GACGC	1 cut(s)	509
HhaI	GCGC	2 cut(s)	127, 138
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	2 cut(s)	628, 655
Hin6I	GCGC	2 cut(s)	125, 136
HinP1I	GCGC	2 cut(s)	125, 136
HinfI	GANTC	5 cut(s)	9, 44, 545, 628, 664
HpaII	CCGG	3 cut(s)	404, 526, 620
HphI	GGTGA	1 cut(s)	515
Hpy188I	TCNGA	6 cut(s)	72, 132, 372, 379, 663, 737
Hpy188III	TCNNGA	1 cut(s)	165
HpyAV	CCTTC	5 cut(s)	77, 562, 671, 685, 718
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	95, 122, 188, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 536, 581
HpyF3I	CTNAG	2 cut(s)	376, 734
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	2 cut(s)	628, 655
HspAI	GCGC	2 cut(s)	125, 136
Kzo9I	GATC	3 cut(s)	322, 372, 643
LmnI	GCTCC	2 cut(s)	181, 714
Lsp1109I	GCAGC	4 cut(s)	134, 551, 620, 691
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	3 cut(s)	324, 374, 645
MboI	GATC	3 cut(s)	322, 372, 643
MboII	GAAGA	7 cut(s)	39, 42, 121, 358, 367, 485, 577
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	3 cut(s)	80, 178, 244
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	4 cut(s)	336, 365, 446, 672
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	2 cut(s)	622, 658
Mox20I	TGGCCA	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	3 cut(s)	14, 21, 236
Msp20I	TGGCCA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	484
MspCI	CTTAAG	1 cut(s)	235
MspI	CCGG	3 cut(s)	404, 526, 620
MspR9I	CCNGG	2 cut(s)	405, 527
MunI	CAATTG	1 cut(s)	672
MwoI	GCNNNNNNNGC	3 cut(s)	133, 536, 581
NciI	CCSGG	2 cut(s)	405, 527
NdeII	GATC	3 cut(s)	322, 372, 643
NlaIII	CATG	2 cut(s)	628, 655
NlaIV	GGNNCC	2 cut(s)	77, 618
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	521
PfeI	GAWTC	3 cut(s)	9, 44, 545
PkrI	GCNGC	5 cut(s)	124, 486, 541, 610, 706
PleI	GAGTC	2 cut(s)	622, 658
PpsI	GAGTC	2 cut(s)	622, 658
PspN4I	GGNNCC	2 cut(s)	77, 618
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	372
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	14, 21, 236
SatI	GCNGC	5 cut(s)	123, 485, 540, 609, 705
Sau3AI	GATC	3 cut(s)	322, 372, 643
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	622, 658
ScrFI	CCNGG	2 cut(s)	405, 527
SduI	GDGCHC	3 cut(s)	80, 178, 244
SetI	ASST	8 cut(s)	77, 163, 187, 260, 403, 696, 706, 735
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	336, 365, 446, 672
SsiI	CCGC	1 cut(s)	484
StyD4I	CCNGG	2 cut(s)	403, 525
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	107, 325
TasI	AATT	4 cut(s)	336, 365, 446, 672
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	3 cut(s)	9, 44, 545
Tru1I	TTAA	3 cut(s)	14, 21, 236
Tru9I	TTAA	3 cut(s)	14, 21, 236
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	4 cut(s)	122, 539, 608, 704
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	3 cut(s)	359, 474, 640
TspRI	CASTG	1 cut(s)	724
Vha464I	CTTAAG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.