Rh1AG135900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003835
Physical Location & Seq
Reverse (-)
25801617 .. 25801910
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG135900.1

Sequence Viewer

Length: 294 bp
ATGATAGGAATCTTAAAGATTAAGCCCCTAATATCTATGCTTGAGTCTTCTTCAAGCCACCAGTTCCTTCGAGGTGTCTTCTTCAAGCCACCAGTTCCTTCGAGGTGCTCTGTGAGTCGGACTGCAAAGGGTAAGTCAGAGATGAAAACTGCAGCGCCTCTGAAGCGCTCAAAGATAACTACGAAAAAAGGTTCTGGAGATGGTGCCCCTAAAGGTGCAGAGGAAATTCATGTAGTGCTATGCACGCCTCAGAACTCTCCAGAAATAACCCAAGCACGCGATCCGTTTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.45

Weight (kDa)

10.09

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccII CGCG 1 cut(s) 279
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 182
AfeI AGCGCT 1 cut(s) 167
AgsI TTSAA 2 cut(s) 54, 85
Alw21I GWGCWC 1 cut(s) 110
AlwI GGATC 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 225
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 2 cut(s) 157, 168
BaeGI GKGCMC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 2 cut(s) 39, 70
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 2 cut(s) 158, 169
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 205
BpiI GAAGAC 2 cut(s) 39, 70
BpmI CTGGAG 2 cut(s) 216, 243
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 61, 92
Bse8I GATNNNNATC 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 2 cut(s) 61, 92
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 110, 208
Bsp143I GATC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 61, 92
BssMI GATC 1 cut(s) 280
BstC8I GCNNGC 2 cut(s) 245, 277
BstDEI CTNAG 1 cut(s) 249
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 2 cut(s) 158, 169
BstHHI GCGC 2 cut(s) 157, 168
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 163, 244
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 2 cut(s) 39, 70
Cac8I GCNNGC 2 cut(s) 245, 277
CfoI GCGC 2 cut(s) 157, 168
CviAII CATG 1 cut(s) 230
CviJI RGCY 3 cut(s) 25, 57, 88
CviKI_1 RGCY 3 cut(s) 25, 57, 88
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco47III AGCGCT 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 182
FaeI CATG 1 cut(s) 233
FaiI YATR 3 cut(s) 38, 231, 241
FatI CATG 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 2 cut(s) 156, 167
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 216, 243
HaeII RGCGCY 2 cut(s) 158, 169
HhaI GCGC 2 cut(s) 157, 168
Hin1II CATG 1 cut(s) 233
Hin6I GCGC 2 cut(s) 155, 166
HinP1I GCGC 2 cut(s) 155, 166
HinfI GANTC 3 cut(s) 9, 44, 115
Hpy188I TCNGA 4 cut(s) 120, 139, 162, 252
Hpy188III TCNNGA 3 cut(s) 195, 260, 291
HpyAV CCTTC 2 cut(s) 77, 108
HpyCH4V TGCA 4 cut(s) 125, 152, 218, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 244
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 1 cut(s) 233
HspAI GCGC 2 cut(s) 155, 166
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 4 cut(s) 74, 105, 180, 273
Lsp1109I GCAGC 1 cut(s) 164
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 4 cut(s) 39, 42, 70, 73
MhlI GDGCHC 2 cut(s) 110, 208
MluCI AATT 1 cut(s) 225
MlyI GAGTC 2 cut(s) 53, 124
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 65, 96, 168, 214, 258
MseI TTAA 2 cut(s) 14, 21
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 163, 244
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 52, 123
PpsI GAGTC 2 cut(s) 52, 123
PspN4I GGNNCC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 154
SaqAI TTAA 2 cut(s) 14, 21
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 280
SchI GAGTC 2 cut(s) 53, 124
SduI GDGCHC 2 cut(s) 110, 208
SetI ASST 4 cut(s) 76, 107, 193, 217
SfcI CTRYAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 225
TaqI TCGA 2 cut(s) 70, 101
TasI AATT 1 cut(s) 225
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 14, 21
Tru9I TTAA 2 cut(s) 14, 21
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 158, 218
TspGWI ACGGA 1 cut(s) 273
XapI RAATTY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.