RLG00000029506

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003835
Physical Location & Seq
Forward (+)
39649154 .. 39649681
528 bp
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UTR
Exon/CDS
Intron
RLM00000029506

Sequence Viewer

Length: 378 bp
ATGATAGGAATCTTAAAGATTAAGCCCCTAATATCTACGCTTGAGTCTTCTTCAAGCTACCAGTTCCTTCAGAGGTGCTCTGTGAGTGGGACTGCAAAGGGTAAGTCGAAGACGAAAACTGCAGCGCCTCTGAAGCGCTCAAAGATAACTACGAAAAAAGGTTCTGGAGATGGTGCTCCTAAAGGTGCAGAGGAAATTCATGTAGTGCTATGTACGCCTCAGAACTCTCCAGAAATAACCCAAGCACGCGATCCGTTTTCCCGTGCAGGCATTAAGAATCTTCCAAGAAGCCCTAGGAGGCTGAAATGCCTGGCATTTCGTGAGTGTGTATCTGCGGGATCATTTCAGTCGTACTGCAAGATAGCAAACAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.46

Weight (kDa)

10.14

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 335
AclWI GGATC 2 cut(s) 245, 346
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 2 cut(s) 53, 152
AfaI GTAC 2 cut(s) 214, 353
AfeI AGCGCT 1 cut(s) 137
AgsI TTSAA 1 cut(s) 54
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 2 cut(s) 57, 372
AluI AGCT 2 cut(s) 57, 372
Alw21I GWGCWC 2 cut(s) 80, 178
AlwI GGATC 2 cut(s) 245, 346
Aor51HI AGCGCT 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 195
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 2 cut(s) 127, 138
AvrII CCTAGG 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 39, 116
Bbv12I GWGCWC 2 cut(s) 80, 178
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 311
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 2 cut(s) 128, 139
BisI GCNGC 1 cut(s) 123
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 311
BpiI GAAGAC 2 cut(s) 39, 116
BpmI CTGGAG 2 cut(s) 186, 213
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 293
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 2 cut(s) 207, 285
Bsh1236I CGCG 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 80, 178
BslFI GGGAC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 80, 178
Bsp143I GATC 2 cut(s) 250, 338
BspACI CCGC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 2 cut(s) 245, 346
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 2 cut(s) 250, 338
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 247, 268
BstDEI CTNAG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 249
BstH2I RGCGCY 2 cut(s) 128, 139
BstHHI GCGC 2 cut(s) 127, 138
BstKTI GATC 2 cut(s) 253, 341
BstMBI GATC 2 cut(s) 250, 338
BstMWI GCNNNNNNNGC 2 cut(s) 133, 214
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 2 cut(s) 39, 116
Cac8I GCNNGC 2 cut(s) 247, 268
CfoI GCGC 2 cut(s) 127, 138
Csp6I GTAC 2 cut(s) 213, 352
CviAII CATG 1 cut(s) 200
CviJI RGCY 5 cut(s) 25, 57, 291, 301, 372
CviKI_1 RGCY 5 cut(s) 25, 57, 291, 301, 372
CviQI GTAC 2 cut(s) 213, 352
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 252, 340
DpnII GATC 2 cut(s) 250, 338
Eco130I CCWWGG 1 cut(s) 293
Eco47III AGCGCT 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 53, 152
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 1 cut(s) 203
FaiI YATR 2 cut(s) 201, 211
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 126, 137
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 186, 213
HaeII RGCGCY 2 cut(s) 128, 139
HhaI GCGC 2 cut(s) 127, 138
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 2 cut(s) 125, 136
HinP1I GCGC 2 cut(s) 125, 136
HinfI GANTC 3 cut(s) 9, 44, 277
Hpy188I TCNGA 3 cut(s) 72, 132, 222
Hpy188III TCNNGA 3 cut(s) 165, 230, 320
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 5 cut(s) 95, 122, 188, 266, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 214
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 2 cut(s) 125, 136
Kzo9I GATC 2 cut(s) 250, 338
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 74, 150, 243, 252, 296, 323
Lsp1109I GCAGC 1 cut(s) 134
MaeI CTAG 1 cut(s) 294
MalI GATC 2 cut(s) 252, 340
MboI GATC 2 cut(s) 250, 338
MboII GAAGA 4 cut(s) 39, 42, 121, 272
MhlI GDGCHC 2 cut(s) 80, 178
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 5 cut(s) 66, 138, 184, 228, 291
MseI TTAA 3 cut(s) 14, 21, 273
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 133, 214
NdeII GATC 2 cut(s) 250, 338
NlaIII CATG 1 cut(s) 203
PfeI GAWTC 2 cut(s) 9, 277
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PstI CTGCAG 1 cut(s) 124
RsaI GTAC 2 cut(s) 214, 353
RsaNI GTAC 2 cut(s) 213, 352
SaqAI TTAA 3 cut(s) 14, 21, 273
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 250, 338
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 2 cut(s) 80, 178
SetI ASST 5 cut(s) 59, 77, 163, 187, 374
SfcI CTRYAG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 195
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 293
TaqI TCGA 1 cut(s) 107
TasI AATT 1 cut(s) 195
TfiI GAWTC 2 cut(s) 9, 277
Tru1I TTAA 3 cut(s) 14, 21, 273
Tru9I TTAA 3 cut(s) 14, 21, 273
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 243
XapI RAATTY 1 cut(s) 195
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.