Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Forward (+)

49282672 .. 49283230

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCAAGCAAGATAAAATACTTGGGCTTAAATGGCATTGTTACTAAAGAGTTGCCTTCATCAATTTGGTCTCTTAAAAAACTTGCTAAACTGAATCTTTCTAGTCGTTCAGGCATTAAGAATCTTCCAAGAAGCCCTAGGAAGCTGAAATGCCTGGCATTTCGTGAGTGTGTATCTGCGGGATCATTTCAGTCGTACTGCAAGATAGCAAACAGCTTCCTTGAGTTTGTCCCGAACAGCATCTACAATTTCTCAGTGACTTACAGGCTGCTTGAAACTGAAAAGATTGCCTCCCATGTCAGTGATTTTGTGCCCTTGATATCTCTAGACCTCAGTGATTGCCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

116

Amino Acids

13.04

Weight (kDa)

9.54

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	4 - 54	3.6e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	190
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	145, 216
AluI	AGCT	2 cut(s)	145, 216
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	268
AspA2I	CCTAGG	1 cut(s)	137
AvrII	CCTAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	3 cut(s)	102, 138, 326
BisI	GCNGC	1 cut(s)	269
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	267, 346
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	182
BspACI	CCGC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	266, 345
BspPI	GGATC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	253, 332
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	255
BtsIMutI	CAGTG	3 cut(s)	261, 307, 340
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	5 cut(s)	27, 135, 145, 216, 268
CviKI_1	RGCY	5 cut(s)	27, 135, 145, 216, 268
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	253, 332
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	1 cut(s)	299
FaiI	YATR	1 cut(s)	297
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	295
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	3 cut(s)	102, 138, 326
GluI	GCNGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	299
HinfI	GANTC	2 cut(s)	94, 121
Hpy188III	TCNNGA	3 cut(s)	164, 232, 326
HpyAV	CCTTC	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	253, 332
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	182
LpnPI	CCDG	4 cut(s)	96, 140, 167, 250
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	3 cut(s)	102, 138, 326
MaeIII	GTNAC	2 cut(s)	40, 256
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	63, 247, 344
MnlI	CCTC	2 cut(s)	301, 341
MseI	TTAA	3 cut(s)	29, 75, 117
MslI	CAYNNNNRTG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	94, 121
PkrI	GCNGC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	29, 75, 117
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	3 cut(s)	147, 218, 333
SfaNI	GCATC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	63, 247, 344
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	3 cut(s)	102, 138, 326
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	137
TasI	AATT	3 cut(s)	63, 247, 344
TfiI	GAWTC	2 cut(s)	94, 121
Tru1I	TTAA	3 cut(s)	29, 75, 117
Tru9I	TTAA	3 cut(s)	29, 75, 117
TscAI	CASTG	3 cut(s)	261, 307, 340
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	3 cut(s)	261, 307, 340
XbaI	TCTAGA	1 cut(s)	325
XmaJI	CCTAGG	1 cut(s)	137
XspI	CTAG	3 cut(s)	102, 138, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.