Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Forward (+)

50348138 .. 50352005

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCTAGCATTGATACGTCCGCCTTTGTGGAGAGGTGATGGGATCACCGAAGCCCGTCCGCCTTTGTGGCGCCGGTTACTTGTCTTTGTGATAGTAATGCTGAAGCCCGATATCCTAATCGCTACACTTAGTGGCGTGTGGGTATATAACAGGAGTATATGGGATATCAACATTGGCCCACTTGATTATGTGAGCTGCTTGAAGCATGAAGTGGGTCGCATAATCAAAAGATCGGGAAAATCAACCCGGTCCATGTTGACTAAGGCAACTTTAGGAAGGGTGAAGGTTTTGATTCCGGCTGCTGAGTGGAAGCTATGTTTGCTTACTTGGTTGAGTAGGTTCATCGTTGCTGATTTTCCTTACGAAAAATTGCAGCGCGGGTCATTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.92

Weight (kDa)

10.39

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	20, 59, 378
AclWI	GGATC	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	70
AdeI	CACNNNGTG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	2 cut(s)	195, 313
AluI	AGCT	2 cut(s)	195, 313
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	195, 299, 373
AspLEI	GCGC	2 cut(s)	72, 378
AspS9I	GGNCC	2 cut(s)	176, 249
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	37, 47, 292
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	182, 286, 385
BccI	CCATC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	247
BfaI	CTAG	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	196, 300, 374
BlsI	GCNGC	3 cut(s)	197, 301, 375
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	176, 249
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	247
BmtI	GCTAGC	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	70
Bse118I	RCCGGY	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	294
BseXI	GCAGC	3 cut(s)	182, 286, 385
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	73, 247, 296
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	42, 230
BspACI	CCGC	3 cut(s)	20, 59, 378
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	71
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssMI	GATC	2 cut(s)	42, 230
BssNI	GRCGYC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	128, 261, 303, 390
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	72, 378
BstKTI	GATC	2 cut(s)	45, 233
BstMBI	GATC	2 cut(s)	42, 230
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 319
BstSCI	CCNGG	1 cut(s)	245
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	182, 286, 385
BsuRI	GGCC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	72, 378
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	176, 249
CviAII	CATG	2 cut(s)	206, 253
CviJI	RGCY	6 cut(s)	53, 106, 177, 195, 299, 313
CviKI_1	RGCY	6 cut(s)	53, 106, 177, 195, 299, 313
DdeI	CTNAG	4 cut(s)	128, 261, 303, 390
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	2 cut(s)	44, 232
DpnII	GATC	2 cut(s)	42, 230
DraIII	CACNNNGTG	1 cut(s)	131
EciI	GGCGGA	2 cut(s)	9, 48
Eco32I	GATATC	2 cut(s)	112, 166
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	122
EcoRV	GATATC	2 cut(s)	112, 166
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
FaeI	CATG	2 cut(s)	209, 256
FaiI	YATR	9 cut(s)	145, 147, 158, 160, 189, 207, 221, 254, 316
FatI	CATG	2 cut(s)	205, 252
FauI	CCCGC	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	196, 300, 374
Fsp4HI	GCNGC	3 cut(s)	196, 300, 374
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	2 cut(s)	71, 377
GluI	GCNGC	3 cut(s)	196, 300, 374
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	73, 247, 296
HhaI	GCGC	2 cut(s)	72, 378
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	209, 256
Hin6I	GCGC	2 cut(s)	70, 376
HinP1I	GCGC	2 cut(s)	70, 376
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	3 cut(s)	73, 247, 296
HphI	GGTGA	3 cut(s)	37, 47, 292
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	234
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	270, 277
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 319
HpyF3I	CTNAG	4 cut(s)	128, 261, 303, 390
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	209, 256
HspAI	GCGC	2 cut(s)	70, 376
KasI	GGCGCC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	42, 230
LpnPI	CCDG	4 cut(s)	86, 136, 260, 309
Lsp1109I	GCAGC	3 cut(s)	182, 286, 385
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	2 cut(s)	44, 232
MboI	GATC	2 cut(s)	42, 230
MluCI	AATT	1 cut(s)	368
Mly113I	GGCGCC	1 cut(s)	70
MnlI	CCTC	1 cut(s)	26
MspI	CCGG	3 cut(s)	73, 247, 296
MspR9I	CCNGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	67, 319
NarI	GGCGCC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	247
NdeII	GATC	2 cut(s)	42, 230
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	209, 256
NlaIV	GGNNCC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	197, 301, 375
PluTI	GGCGCC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	176, 249
SatI	GCNGC	3 cut(s)	196, 300, 374
Sau3AI	GATC	2 cut(s)	42, 230
Sau96I	GGNCC	2 cut(s)	176, 249
ScrFI	CCNGG	1 cut(s)	247
SetI	ASST	6 cut(s)	19, 37, 197, 288, 315, 341
SfoI	GGCGCC	1 cut(s)	71
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	20, 59, 378
SspDI	GGCGCC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	245
TaiI	ACGT	1 cut(s)	19
TasI	AATT	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	292
TseI	GCWGC	3 cut(s)	195, 299, 373
TspDTI	ATGAA	2 cut(s)	222, 331
VpaK11BI	GGWCC	1 cut(s)	249
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.