Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

47383712 .. 47385255

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATACGAATCTTAAAGATTAAGCCCCTAATATCTACGCTTGAGTCTTCTTCAAGCCACCAGTTCCTTCAGAGGTGCCCTGTGAGTGGGACTGCAAAGGGTAAGACGAAGACGAAAACTGCAGCGCCTCTGAAGCGCTCAAAGATAACTACAAAAAAAGGTTCTGGAGATGGTGCTTCTAAAGGTGCAGGAGGAAAAAGATATGCTGAAAGAGAAAAGTTTTATGAGCAATGCTTAAGTGCCCCCACCCCTGTCAGGTACTTGACAGAGAAAGAGAGAAAGCGTGAAGCCGAGCGAGAGAAGTTGGGACTTATTAGCAAAGATCGACAGCGTGAAATTGATATGAAGAAAAAGAAGAAGCCAGAATTTCAGATCTCAGAAAAACCAACAGTTATTGGACCTCCGGGTTTGGATTTGATATCACTTGGTTTGGTTGATGAGGAGGAATTACCAAAATATGAACTGACTGCTGAAGATGGCCAGCGGCTCGCAAAGGAGTATAGTAGGGTGTTGATGAGGCGTCACCGGGCAAGGCAAGCAGCAGAATCCACACTTTTGCGTTTGAAGAAGGAGGCTATTGAGGCATTGCCTGAACATTTGAAAGAGGCAGCATTGGCTACATTGAGAAGGTCAAGGAAGCTGCAAGGAGGAGCAGTGAGAAGGGGAAGCTCAGATGACCAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.68

Weight (kDa)

10.1

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AciI	CCGC	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	3 cut(s)	53, 152, 492
AcyI	GRCGYC	1 cut(s)	520
AfaI	GTAC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	86, 255
AflII	CTTAAG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	54, 565, 601
AluBI	AGCT	2 cut(s)	640, 669
AluI	AGCT	2 cut(s)	640, 669
Aor51HI	AGCGCT	1 cut(s)	137
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	4 cut(s)	122, 539, 608, 640
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	2 cut(s)	127, 138
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	405, 527
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	2 cut(s)	80, 244
BalI	TGGCCA	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	39, 116
BbvI	GCAGC	4 cut(s)	134, 551, 620, 627
BccI	CCATC	2 cut(s)	164, 470
BcnI	CCSGG	2 cut(s)	405, 527
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	2 cut(s)	128, 139
BfrI	CTTAAG	1 cut(s)	235
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	5 cut(s)	123, 485, 540, 609, 641
BlsI	GCNGC	5 cut(s)	124, 486, 541, 610, 642
Bme1390I	CCNGG	2 cut(s)	405, 527
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	2 cut(s)	405, 527
BpiI	GAAGAC	2 cut(s)	39, 116
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	405, 527
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 255
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	236, 584
Bse8I	GATNNNNATC	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	86, 255
BseMI	GCAATG	2 cut(s)	236, 584
BseMII	CTCAG	2 cut(s)	390, 684
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	455, 663
BseSI	GKGCMC	2 cut(s)	80, 244
BseXI	GCAGC	4 cut(s)	134, 551, 620, 627
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	480
BshNI	GGYRCC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	404, 526
BslFI	GGGAC	2 cut(s)	103, 321
BslI	CCNNNNNNNGG	2 cut(s)	86, 255
BsmFI	GGGAC	2 cut(s)	103, 321
BsnI	GGCC	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	80, 244
Bsp143I	GATC	2 cut(s)	322, 372
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	2 cut(s)	389, 683
BspLI	GGNNCC	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	236, 584
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	322, 372
BssNI	GRCGYC	1 cut(s)	520
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	520
BstAFI	CTTAAG	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	482, 489, 537
BstDEI	CTNAG	2 cut(s)	376, 670
BstH2I	RGCGCY	2 cut(s)	128, 139
BstHHI	GCGC	2 cut(s)	127, 138
BstKTI	GATC	2 cut(s)	325, 375
BstMBI	GATC	2 cut(s)	322, 372
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 536, 581, 614
BstSCI	CCNGG	2 cut(s)	403, 525
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	2 cut(s)	80, 244
BstV1I	GCAGC	4 cut(s)	134, 551, 620, 627
BstV2I	GAAGAC	2 cut(s)	39, 116
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	3 cut(s)	482, 489, 537
CfoI	GCGC	2 cut(s)	127, 138
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	259
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	376, 670
DpnI	GATC	2 cut(s)	324, 374
DpnII	GATC	2 cut(s)	322, 372
EaeI	YGGCCR	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	398
Eco47III	AGCGCT	1 cut(s)	137
Eco57I	CTGAAG	3 cut(s)	53, 152, 492
EcoRV	GATATC	1 cut(s)	420
FaiI	YATR	5 cut(s)	204, 225, 344, 459, 501
FaqI	GGGAC	2 cut(s)	103, 321
Fnu4HI	GCNGC	5 cut(s)	123, 485, 540, 609, 641
Fsp4HI	GCNGC	5 cut(s)	123, 485, 540, 609, 641
GlaI	GCGC	2 cut(s)	126, 137
GluI	GCNGC	5 cut(s)	123, 485, 540, 609, 641
GsuI	CTGGAG	1 cut(s)	186
HaeII	RGCGCY	2 cut(s)	128, 139
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	2 cut(s)	404, 526
HgaI	GACGC	1 cut(s)	509
HhaI	GCGC	2 cut(s)	127, 138
Hin1I	GRCGYC	1 cut(s)	520
Hin6I	GCGC	2 cut(s)	125, 136
HinP1I	GCGC	2 cut(s)	125, 136
HinfI	GANTC	3 cut(s)	9, 44, 545
HpaII	CCGG	2 cut(s)	404, 526
HphI	GGTGA	1 cut(s)	515
Hpy188I	TCNGA	5 cut(s)	72, 132, 372, 379, 673
Hpy188III	TCNNGA	1 cut(s)	165
HpyAV	CCTTC	4 cut(s)	77, 562, 621, 654
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	95, 122, 188, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 536, 581, 614
HpyF3I	CTNAG	2 cut(s)	376, 670
Hsp92I	GRCGYC	1 cut(s)	520
HspAI	GCGC	2 cut(s)	125, 136
Kzo9I	GATC	2 cut(s)	322, 372
LmnI	GCTCC	1 cut(s)	650
Lsp1109I	GCAGC	4 cut(s)	134, 551, 620, 627
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	2 cut(s)	324, 374
MboI	GATC	2 cut(s)	322, 372
MboII	GAAGA	7 cut(s)	39, 42, 121, 358, 367, 485, 577
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	80, 244
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	3 cut(s)	336, 365, 446
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	53
Mox20I	TGGCCA	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	3 cut(s)	14, 21, 236
Msp20I	TGGCCA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	484
MspCI	CTTAAG	1 cut(s)	235
MspI	CCGG	2 cut(s)	404, 526
MspR9I	CCNGG	2 cut(s)	405, 527
MwoI	GCNNNNNNNGC	4 cut(s)	133, 536, 581, 614
NciI	CCSGG	2 cut(s)	405, 527
NdeII	GATC	2 cut(s)	322, 372
NlaIV	GGNNCC	1 cut(s)	77
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	9, 545
PkrI	GCNGC	5 cut(s)	124, 486, 541, 610, 642
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	372
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	14, 21, 236
SatI	GCNGC	5 cut(s)	123, 485, 540, 609, 641
Sau3AI	GATC	2 cut(s)	322, 372
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	405, 527
SduI	GDGCHC	2 cut(s)	80, 244
SetI	ASST	9 cut(s)	77, 163, 187, 260, 403, 632, 642, 671, 686
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	41, 235
SmoI	CTYRAG	2 cut(s)	41, 235
Sse9I	AATT	3 cut(s)	336, 365, 446
SsiI	CCGC	1 cut(s)	484
StyD4I	CCNGG	2 cut(s)	403, 525
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	325
TasI	AATT	3 cut(s)	336, 365, 446
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	2 cut(s)	9, 545
Tru1I	TTAA	3 cut(s)	14, 21, 236
Tru9I	TTAA	3 cut(s)	14, 21, 236
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	4 cut(s)	122, 539, 608, 640
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	359, 474
TspRI	CASTG	1 cut(s)	660
Vha464I	CTTAAG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.