Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

31161923 .. 31163273

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1238400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTGAAGAAAGACAAGGGAAAATTGGGCATCCCAGAAAAACCAACAATTATTGGAACTCCTGGTTTGGATTTGGTATCACTAGGTTTGGTCGATGTGGAGAAGATACCAAAATATAACCTGACTGTTGAAGGCGGTCGAAAGCTTGCAAAGGAGAATGAGTATAGCAGCAGAGTCCACACTGTTGCGGTGGAGGCGATTGAGGCATTGCCTGGACATTTGAAAGCAGCAGCACTGGTGCCAGATCTTACTCCGTTCCCAGTCAAACGGTTCACGGCAACTCTGACTCCTCCAATTGAAGGTTATATTGATCGAGTTAAGGAAGCTGCAAGAAAGAGCAGTGCAAAGGAGAAGCTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.04

Weight (kDa)

9.58

Isoelectric Point (pI)

25.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AciI	CCGC	2 cut(s)	135, 188
AcuI	CTGAAG	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	131, 223, 299
AjnI	CCWGG	2 cut(s)	61, 211
AluBI	AGCT	3 cut(s)	145, 326, 355
AluI	AGCT	3 cut(s)	145, 326, 355
ApeKI	GCWGC	4 cut(s)	168, 227, 230, 326
BanI	GGYRCC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	180, 239, 242, 313
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	63, 213
BfaI	CTAG	1 cut(s)	83
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	4 cut(s)	169, 228, 231, 327
BlsI	GCNGC	4 cut(s)	170, 229, 232, 328
Bme1390I	CCNGG	2 cut(s)	63, 213
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	63, 213
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	240, 260
Bse3DI	GCAATG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	63, 213
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	240, 260
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	180, 239, 242, 313
Bsh1285I	CGRYCG	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	244, 310
BspACI	CCGC	2 cut(s)	135, 188
BspLI	GGNNCC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	240, 260
BssMI	GATC	2 cut(s)	244, 310
Bst2UI	CCWGG	2 cut(s)	63, 213
Bst4CI	ACNGT	3 cut(s)	127, 184, 270
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	2 cut(s)	247, 313
BstMBI	GATC	2 cut(s)	244, 310
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 203
BstNI	CCWGG	2 cut(s)	63, 213
BstSCI	CCNGG	2 cut(s)	61, 211
BstV1I	GCAGC	4 cut(s)	180, 239, 242, 313
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	3 cut(s)	180, 233, 346
Cac8I	GCNNGC	1 cut(s)	147
CviJI	RGCY	3 cut(s)	145, 326, 355
CviKI_1	RGCY	3 cut(s)	145, 326, 355
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	2 cut(s)	246, 312
DpnII	GATC	2 cut(s)	244, 310
Eco57I	CTGAAG	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	61, 211
FaiI	YATR	3 cut(s)	117, 165, 306
Fnu4HI	GCNGC	4 cut(s)	169, 228, 231, 327
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	169, 228, 231, 327
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	4 cut(s)	169, 228, 231, 327
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	174, 286
Hpy166II	GTNNAC	2 cut(s)	178, 273
Hpy188I	TCNGA	2 cut(s)	285, 359
Hpy8I	GTNNAC	2 cut(s)	178, 273
HpyAV	CCTTC	2 cut(s)	125, 293
HpyCH4III	ACNGT	3 cut(s)	127, 184, 270
HpyCH4V	TGCA	3 cut(s)	149, 329, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 203
HpyF3I	CTNAG	1 cut(s)	356
Kzo9I	GATC	2 cut(s)	244, 310
LpnPI	CCDG	9 cut(s)	48, 48, 75, 134, 198, 221, 225, 255, 273
Lsp1109I	GCAGC	4 cut(s)	180, 239, 242, 313
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	83
MalI	GATC	2 cut(s)	246, 312
MboI	GATC	2 cut(s)	244, 310
MboII	GAAGA	2 cut(s)	19, 115
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	3 cut(s)	23, 48, 294
MlyI	GAGTC	2 cut(s)	183, 280
MnlI	CCTC	3 cut(s)	187, 196, 300
MseI	TTAA	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	63, 213
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	2 cut(s)	63, 213
MwoI	GCNNNNNNNGC	2 cut(s)	194, 203
NdeII	GATC	2 cut(s)	244, 310
NlaIV	GGNNCC	1 cut(s)	240
PkrI	GCNGC	4 cut(s)	170, 229, 232, 328
PleI	GAGTC	2 cut(s)	182, 280
PpsI	GAGTC	2 cut(s)	182, 280
Psp6I	CCWGG	2 cut(s)	61, 211
PspGI	CCWGG	2 cut(s)	61, 211
PspN4I	GGNNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	169, 228, 231, 327
Sau3AI	GATC	2 cut(s)	244, 310
SchI	GAGTC	2 cut(s)	183, 280
ScrFI	CCNGG	2 cut(s)	63, 213
SetI	ASST	6 cut(s)	88, 123, 147, 304, 328, 357
SfaNI	GCATC	1 cut(s)	39
Sse9I	AATT	3 cut(s)	23, 48, 294
SsiI	CCGC	2 cut(s)	135, 188
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	61, 211
TaaI	ACNGT	3 cut(s)	127, 184, 270
TaqI	TCGA	3 cut(s)	93, 139, 313
TasI	AATT	3 cut(s)	23, 48, 294
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	187, 240, 346
TseI	GCWGC	4 cut(s)	168, 227, 230, 326
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	3 cut(s)	187, 240, 346
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.