Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Forward (+)

74899645 .. 74901950

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0635500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATCCTTGATTCTTCTTCTAAAAGAAGGAGGGTCACCAACATTGATCGCATGGAGGCCGAAGAAGCCAAGGCCAAGCTCACAGCAGCAAAAGAAAAGTTTGGGAGAGAAATTCGTGTTTTTGAAACAGCAGCATCTTCTTCTTCGCACAATGCAGACTCCAATACTGAGGAGCCAGATGACCTTTATGAGTTCACTGCTGAGGATTATTATCGGATAATGAATACCAAGAAGGAAGATAAGTTCCTGAAAACACGAAAGATTAGAGAGGCAGAACAGGCAGCTCGCAGGTCAAGGATAACAAAGGCTGTGATCAGGGTTCGCTTTCCTGATAATGCAACATTAGAGGCCACTTTTCATCCATCAGAAACAATTCAGAGCTTGGTTGATCTCCTCATGAAAGTGGTTGCTCGACCAGAATTATCGTTCCACATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTTTACTCTGCTGGCTTTGCTCCTGGTGCAATTGTATATTTTTCATATGATATTCCAAAAGGTGATGATACTGCAGATGTCAAGTCAGGTCCTTTCCTTCACGACGAGATCATGTCTTTGAAAGGTCTGGAACTCGTGAAAGAGCATGCAGAGCCCGTTCAGACTGCACCAGAACCTATACACGAGGCACCACCCCCTGTTGTCCAAGAGAAGAAGCCTGCTGAGAAAAAATCTGTTAAGCCGAAGTGGCTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

28.0

Weight (kDa)

7.83

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	125, 601
AjnI	CCWGG	1 cut(s)	502
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	4 cut(s)	79, 284, 381, 457
AluI	AGCT	4 cut(s)	79, 284, 381, 457
AoxI	GGCC	3 cut(s)	57, 72, 348
ApeKI	GCWGC	3 cut(s)	86, 131, 281
ApoI	RAATTY	1 cut(s)	111
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	28, 554
AvaII	GGWCC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	667
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	2 cut(s)	614, 662
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	98, 143, 293
BccI	CCATC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	504
BclI	TGATCA	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	279
BglI	GCCNNNNNGGC	1 cut(s)	727
BisI	GCNGC	3 cut(s)	87, 132, 282
BlsI	GCNGC	3 cut(s)	88, 133, 283
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	2 cut(s)	174, 669
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	159, 192, 693
BseRI	GAGGAG	3 cut(s)	185, 383, 435
BseXI	GCAGC	3 cut(s)	98, 143, 293
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	3 cut(s)	59, 74, 350
BshNI	GGYRCC	1 cut(s)	667
BsnI	GGCC	3 cut(s)	59, 74, 350
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	5 cut(s)	3, 46, 312, 388, 588
BspANI	GGCC	3 cut(s)	59, 74, 350
BspCNI	CTCAG	3 cut(s)	160, 193, 694
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	174, 669
BspMAI	CTGCAG	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	5 cut(s)	3, 46, 312, 388, 588
BssSI	CACGAG	2 cut(s)	614, 662
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	2 cut(s)	614, 662
Bst2UI	CCWGG	1 cut(s)	504
BstC8I	GCNNGC	4 cut(s)	286, 493, 627, 699
BstDEI	CTNAG	4 cut(s)	168, 201, 450, 702
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	5 cut(s)	6, 49, 315, 391, 591
BstMBI	GATC	5 cut(s)	3, 46, 312, 388, 588
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 278, 497, 506, 631, 727
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	629
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	98, 143, 293
BsuRI	GGCC	3 cut(s)	59, 74, 350
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	4 cut(s)	286, 493, 627, 699
CciI	TCATGA	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	569
CviAII	CATG	5 cut(s)	52, 397, 469, 592, 626
DdeI	CTNAG	4 cut(s)	168, 201, 450, 702
DpnI	GATC	5 cut(s)	5, 48, 314, 390, 590
DpnII	GATC	5 cut(s)	3, 46, 312, 388, 588
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	569
Eco91I	GGTNACC	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	5 cut(s)	55, 400, 472, 595, 629
FatI	CATG	5 cut(s)	51, 396, 468, 591, 625
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	87, 132, 282
FokI	GGATG	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	3 cut(s)	87, 132, 282
GluI	GCNGC	3 cut(s)	87, 132, 282
HaeIII	GGCC	3 cut(s)	59, 74, 350
Hin1II	CATG	5 cut(s)	55, 400, 472, 595, 629
HinfI	GANTC	2 cut(s)	11, 158
HphI	GGTGA	2 cut(s)	28, 554
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	4 cut(s)	216, 367, 378, 642
Hpy188III	TCNNGA	6 cut(s)	247, 329, 397, 581, 608, 616
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	3 cut(s)	21, 226, 587
HpyCH4V	TGCA	6 cut(s)	155, 338, 509, 554, 629, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 278, 497, 506, 631, 727
HpyF3I	CTNAG	4 cut(s)	168, 201, 450, 702
Hsp92II	CATG	5 cut(s)	55, 400, 472, 595, 629
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	5 cut(s)	3, 46, 312, 388, 588
LmnI	GCTCC	2 cut(s)	172, 505
Lsp1109I	GCAGC	3 cut(s)	98, 143, 293
LweI	GCATC	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	5 cut(s)	5, 48, 314, 390, 590
MboI	GATC	5 cut(s)	3, 46, 312, 388, 588
MboII	GAAGA	8 cut(s)	6, 9, 74, 129, 132, 135, 248, 703
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	4 cut(s)	111, 372, 419, 510
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	9 cut(s)	24, 49, 163, 196, 262, 340, 404, 456, 658
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	1 cut(s)	717
MslI	CAYNNNNRTG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	6 cut(s)	65, 278, 497, 506, 631, 727
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	5 cut(s)	3, 46, 312, 388, 588
NlaIII	CATG	5 cut(s)	55, 400, 472, 595, 629
NlaIV	GGNNCC	2 cut(s)	174, 669
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PagI	TCATGA	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	88, 133, 283
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	502
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	174, 669
PspPI	GGNCC	1 cut(s)	569
PspPPI	RGGWCCY	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	3 cut(s)	87, 132, 282
Sau3AI	GATC	5 cut(s)	3, 46, 312, 388, 588
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	636
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	4 cut(s)	111, 372, 419, 510
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	412
TasI	AATT	4 cut(s)	111, 372, 419, 510
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	86, 131, 281
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	236, 347, 413, 513
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.