Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004924.1

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

87856 .. 88452

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004924.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgatacgaatcttaaagattaatccccaaatatctacgcttcagtcttcaagccaccagttccttcaaaggtgctctgtgagtggtactgcaaagggtaagtcgaagacgaagactgcagctcctctgaagtgctcaaagataactacgaaaaaaggttctggagatggtgctcctaaaggtgcaggagggaaaagatatgctgaaagagaaaagttttatgagcaatgcttaagtgcctccatccctgtcaggtacttgacggagaaagagagaaagcgtgaagccgagcgagagaagttgggacttattagcaaagatcgaaagcgtttggatttgatatcacttggtttggttgatgaggagaaattacaaaaatatgaactgactgctgaagatggccagcggctcgccaaggagtatagcagggtgttgatgaggtgtcactgggcaaggcaagcagcagaatcaacacttttacgtttgaagaaggaggctattgggcattgcctgaacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.51

Weight (kDa)

9.87

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	400
AcuI	CTGAAG	3 cut(s)	26, 149, 414
AfaI	GTAC	2 cut(s)	88, 257
AflII	CTTAAG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	51, 68, 487
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw21I	GWGCWC	3 cut(s)	77, 137, 175
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	119, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AseI	ATTAAT	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	402
BbsI	GAAGAC	3 cut(s)	39, 113, 119
Bbv12I	GWGCWC	3 cut(s)	77, 137, 175
BbvI	GCAGC	2 cut(s)	131, 473
BccI	CCATC	3 cut(s)	161, 251, 392
BfmI	CTRYAG	1 cut(s)	117
BfrI	CTTAAG	1 cut(s)	232
BisI	GCNGC	3 cut(s)	120, 407, 462
BlsI	GCNGC	3 cut(s)	121, 408, 463
BmrI	ACTGGG	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	457
BpiI	GAAGAC	3 cut(s)	39, 113, 119
BpmI	CTGGAG	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bse1I	ACTGG	2 cut(s)	58, 452
Bse3DI	GCAATG	2 cut(s)	233, 505
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	8
BseMI	GCAATG	2 cut(s)	233, 505
BseNI	ACTGG	2 cut(s)	58, 452
BseRI	GAGGAG	2 cut(s)	114, 377
BseXI	GCAGC	2 cut(s)	131, 473
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	402
BsiHKAI	GWGCWC	3 cut(s)	77, 137, 175
BslFI	GGGAC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	402
Bsp1286I	GDGCHC	3 cut(s)	77, 137, 175
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	406
BspANI	GGCC	1 cut(s)	402
BspMAI	CTGCAG	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	233, 505
BsrI	ACTGG	2 cut(s)	58, 452
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	414
BstAFI	CTTAAG	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	404, 411, 459
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	131, 473
BstV2I	GAAGAC	3 cut(s)	39, 113, 119
BsuRI	GGCC	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	404, 411, 459
Csp6I	GTAC	2 cut(s)	87, 256
CviJI	RGCY	6 cut(s)	54, 122, 287, 402, 409, 497
CviKI_1	RGCY	6 cut(s)	54, 122, 287, 402, 409, 497
CviQI	GTAC	2 cut(s)	87, 256
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	342
Eco57I	CTGAAG	3 cut(s)	26, 149, 414
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaiI	YATR	4 cut(s)	201, 222, 381, 423
FaqI	GGGAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	120, 407, 462
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	120, 407, 462
GluI	GCNGC	3 cut(s)	120, 407, 462
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	402
HinfI	GANTC	2 cut(s)	9, 467
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	74, 484
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	3 cut(s)	92, 119, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	127, 178
LpnPI	CCDG	8 cut(s)	71, 147, 171, 238, 261, 412, 416, 433
Lsp1109I	GCAGC	2 cut(s)	131, 473
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	5 cut(s)	39, 118, 124, 407, 499
MhlI	GDGCHC	3 cut(s)	77, 137, 175
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	402
MnlI	CCTC	6 cut(s)	135, 182, 250, 355, 432, 487
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	3 cut(s)	14, 21, 233
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	406
MspCI	CTTAAG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	1 cut(s)	319
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	9, 467
PkrI	GCNGC	3 cut(s)	121, 408, 463
PshBI	ATTAAT	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	88, 257
RsaNI	GTAC	2 cut(s)	87, 256
SaqAI	TTAA	3 cut(s)	14, 21, 233
SatI	GCNGC	3 cut(s)	120, 407, 462
Sau3AI	GATC	1 cut(s)	319
SduI	GDGCHC	3 cut(s)	77, 137, 175
SetI	ASST	7 cut(s)	74, 124, 160, 184, 257, 443, 484
SfcI	CTRYAG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	414
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	2 cut(s)	104, 322
TasI	AATT	1 cut(s)	368
TauI	GCSGC	1 cut(s)	409
TfiI	GAWTC	2 cut(s)	9, 467
Tru1I	TTAA	3 cut(s)	14, 21, 233
Tru9I	TTAA	3 cut(s)	14, 21, 233
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	2 cut(s)	119, 461
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	452
Vha464I	CTTAAG	1 cut(s)	232
VspI	ATTAAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.