Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000164

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

321929 .. 326148

Gene Structure 4220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_164G00436420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCCAAGCAAGATAAAATACTTGGGTTTAAATGAAACTGCAACTAAAGAGTTGCCTTCATCAATTTGGTCTCTTAAAAAACTTGCTAAACCGAATCTTTCTAGCCGTACGGCATTAAGAATCTTCCAAGAAGCCCTAGGAAGCCGAAATGCCCGGCATTTTGTGAGTGTGTATCTACAGATCATTTCGGTCGTACCGCAAGATAGCAAACAGCTTGTGAGGCTCCCGGCCAAAGCATCTATGACATTGATACGTCTGCCTTTGTGGCGAGGTGATGGGATCACCGAAGCCCGTCCGCCTTTGTGGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

103

Amino Acids

11.65

Weight (kDa)

11.03

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	197, 296
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	228
AfaI	GTAC	2 cut(s)	109, 195
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	228
AspA2I	CCTAGG	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	309
AsuC2I	CCSGG	2 cut(s)	154, 227
AsuHPI	GGTGA	2 cut(s)	274, 284
AvrII	CCTAGG	1 cut(s)	136
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	90, 126
BcnI	CCSGG	2 cut(s)	154, 227
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	3 cut(s)	102, 137, 310
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	310
BglI	GCCNNNNNGGC	2 cut(s)	265, 304
BlnI	CCTAGG	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	154, 227
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	154, 227
BmsI	GCATC	1 cut(s)	245
BpuMI	CCSGG	2 cut(s)	154, 227
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	154, 227
BsiWI	CGTACG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	180, 279
BspACI	CCGC	2 cut(s)	197, 296
BspANI	GGCC	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	180, 279
BssT1I	CCWWGG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	2 cut(s)	183, 282
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	180, 279
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 265, 304
BstSCI	CCNGG	2 cut(s)	152, 225
BstSFI	CTRYAG	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	108, 194
CviJI	RGCY	7 cut(s)	105, 134, 144, 214, 223, 230, 290
CviKI_1	RGCY	7 cut(s)	105, 134, 144, 214, 223, 230, 290
CviQI	GTAC	2 cut(s)	108, 194
DpnI	GATC	2 cut(s)	182, 281
DpnII	GATC	2 cut(s)	180, 279
DraI	TTTAAA	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaiI	YATR	1 cut(s)	242
FspBI	CTAG	3 cut(s)	102, 137, 310
GlaI	GCGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	2 cut(s)	154, 227
HhaI	GCGC	1 cut(s)	309
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	94, 120
HpaII	CCGG	2 cut(s)	154, 227
HphI	GGTGA	2 cut(s)	274, 284
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 265, 304
HpySE526I	ACGT	1 cut(s)	253
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	180, 279
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	2 cut(s)	167, 240
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	3 cut(s)	102, 137, 310
MaeII	ACGT	1 cut(s)	253
MalI	GATC	2 cut(s)	182, 281
MboI	GATC	2 cut(s)	180, 279
MboII	GAAGA	1 cut(s)	115
MluCI	AATT	1 cut(s)	63
MnlI	CCTC	2 cut(s)	213, 263
MseI	TTAA	3 cut(s)	29, 75, 116
MspI	CCGG	2 cut(s)	154, 227
MspR9I	CCNGG	2 cut(s)	154, 227
MwoI	GCNNNNNNNGC	3 cut(s)	220, 265, 304
NciI	CCSGG	2 cut(s)	154, 227
NdeII	GATC	2 cut(s)	180, 279
NlaIV	GGNNCC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	94, 120
Pfl23II	CGTACG	1 cut(s)	107
PspLI	CGTACG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	224
RsaI	GTAC	2 cut(s)	109, 195
RsaNI	GTAC	2 cut(s)	108, 194
SaqAI	TTAA	3 cut(s)	29, 75, 116
Sau3AI	GATC	2 cut(s)	180, 279
ScrFI	CCNGG	2 cut(s)	154, 227
SetI	ASST	3 cut(s)	216, 256, 274
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	2 cut(s)	197, 296
SspMI	CTAG	3 cut(s)	102, 137, 310
StyD4I	CCNGG	2 cut(s)	152, 225
StyI	CCWWGG	1 cut(s)	136
TaiI	ACGT	1 cut(s)	256
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	94, 120
Tru1I	TTAA	3 cut(s)	29, 75, 116
Tru9I	TTAA	3 cut(s)	29, 75, 116
TspDTI	ATGAA	2 cut(s)	48, 48
XmaJI	CCTAGG	1 cut(s)	136
XspI	CTAG	3 cut(s)	102, 137, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.