Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

11445849 .. 11447429

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATCCATTATCTCCATTTCATCGGTGAATTTTGTTTCTCCAGTGCTGTTAAAGTAGTTGAGTGGTTCTCGGAGAATCTGTTTCTCAAAAGAAGCACAATGGCGTTATCGAAGAGAGGGTTCGTGATGACCTCTAATGCTAGATTTCACGGCGAGGAAGAGGAATTAGAGTTAGGATTAGGATCAGTGAGGTTCACGCGAGGATTAGGGAGGAAAAGGATTTTGATTTCGAGTTGTGTGCGTGAATCTCTATCTAGATCGGCCGTTGAGATTCCGGTAGTATCTGAATCGCCGCCGGTGAAGAGTTCGTTGAAGAGACAACGAAGCAGAATAACAATTGTTTCTTCTTCATCCTCTGAGAAATCTCGACTTGAGTGTCTCCCTCAAGATCTCTTGATTCGAGTCATTTGTGGTGTTGATCATGAGGATCTCAAGAGTCTAAAACTTGTATCTAAATCGATTAGAGAAGCTAGTTTGGTAGCAAAAACGTTACATTTTGCGTACACCACACCTAAAAAGACTCGAGCTTTTCGAAACTCGATCGATCTCGAGGAGGTTTCGGATTCCAGGCATCAAGAGGACGACATAGAGCCTCCTAATGCACCGAGGCACTATCGATGGACCAAGGCTAAGAGGAAAGAGCAACTCTCTAGCGTCTCTGCGGCTTTGTTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

225

Amino Acids

25.57

Weight (kDa)

9.63

Isoelectric Point (pI)

66.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	375
AccII	CGCG	1 cut(s)	199
AciI	CCGC	2 cut(s)	293, 662
AclI	AACGTT	1 cut(s)	488
AclWI	GGATC	2 cut(s)	190, 435
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	503
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	2 cut(s)	470, 527
AluI	AGCT	2 cut(s)	470, 527
Alw26I	GTCTC	3 cut(s)	310, 383, 661
AlwI	GGATC	2 cut(s)	190, 435
Ama87I	CYCGRG	2 cut(s)	522, 548
AoxI	GGCC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	2 cut(s)	38, 310
AsuII	TTCGAA	1 cut(s)	532
AvaI	CYCGRG	2 cut(s)	522, 548
AvaII	GGWCC	1 cut(s)	621
BccI	CCATC	1 cut(s)	612
BceAI	ACGGC	2 cut(s)	166, 248
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	568
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	310, 383, 661
BfaI	CTAG	4 cut(s)	141, 255, 471, 651
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	2 cut(s)	293, 663
BlsI	GCNGC	2 cut(s)	294, 664
Bme1390I	CCNGG	1 cut(s)	568
Bme18I	GGWCC	1 cut(s)	621
BmeT110I	CYCGRG	2 cut(s)	522, 548
BmgT120I	GGNCC	1 cut(s)	621
BmrFI	CCNGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	580
BplI	GAGNNNNNCTC	4 cut(s)	53, 85, 632, 664
BpmI	CTGGAG	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	532
BpuEI	CTTGAG	3 cut(s)	369, 392, 416
Bsa29I	ATCGAT	3 cut(s)	458, 543, 616
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	605, 624
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	568
BseCI	ATCGAT	3 cut(s)	458, 543, 616
BseDI	CCNNGG	2 cut(s)	605, 624
BseGI	GGATG	1 cut(s)	350
BseJI	GATNNNNATC	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	566
BseX3I	CGGCCG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	199
Bsh1285I	CGRYCG	2 cut(s)	264, 543
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	3 cut(s)	458, 543, 616
BsiEI	CGRYCG	2 cut(s)	264, 543
BsiHKCI	CYCGRG	2 cut(s)	522, 548
BsiSI	CCGG	2 cut(s)	275, 296
BsmAI	GTCTC	3 cut(s)	310, 383, 661
BsmBI	CGTCTC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	263
BsoBI	CYCGRG	2 cut(s)	522, 548
Bsp119I	TTCGAA	1 cut(s)	532
Bsp143I	GATC	8 cut(s)	3, 182, 257, 388, 418, 427, 540, 544
BspACI	CCGC	2 cut(s)	293, 662
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	349
BspDI	ATCGAT	3 cut(s)	458, 543, 616
BspFNI	CGCG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	421
BspPI	GGATC	2 cut(s)	190, 435
BspT104I	TTCGAA	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	605, 624
BssMI	GATC	8 cut(s)	3, 182, 257, 388, 418, 427, 540, 544
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	568
Bst6I	CTCTTC	4 cut(s)	107, 153, 296, 308
BstBI	TTCGAA	1 cut(s)	532
BstDEI	CTNAG	2 cut(s)	357, 630
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	8 cut(s)	6, 185, 260, 391, 421, 430, 543, 547
BstMAI	GTCTC	3 cut(s)	310, 383, 661
BstMBI	GATC	8 cut(s)	3, 182, 257, 388, 418, 427, 540, 544
BstMCI	CGRYCG	2 cut(s)	264, 543
BstNI	CCWGG	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	566
BstUI	CGCG	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	388, 427
BstYI	RGATCY	2 cut(s)	388, 427
BstZI	CGGCCG	1 cut(s)	261
Bsu15I	ATCGAT	3 cut(s)	458, 543, 616
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	3 cut(s)	458, 543, 616
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	49, 192
CciI	TCATGA	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	621
ClaI	ATCGAT	3 cut(s)	458, 543, 616
CseI	GACGC	1 cut(s)	643
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	2 cut(s)	422, 675
CviJI	RGCY	6 cut(s)	263, 470, 527, 592, 629, 665
CviKI_1	RGCY	6 cut(s)	263, 470, 527, 592, 629, 665
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	2 cut(s)	357, 630
DpnI	GATC	8 cut(s)	5, 184, 259, 390, 420, 429, 542, 546
DpnII	GATC	8 cut(s)	3, 182, 257, 388, 418, 427, 540, 544
DrdI	GACNNNNNNGTC	1 cut(s)	375
DseDI	GACNNNNNNGTC	1 cut(s)	375
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	4 cut(s)	107, 153, 296, 308
EarI	CTCTTC	4 cut(s)	107, 153, 296, 308
EclXI	CGGCCG	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	621
Eco52I	CGGCCG	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	522, 548
EcoRII	CCWGG	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	2 cut(s)	425, 678
FaiI	YATR	3 cut(s)	423, 587, 676
FatI	CATG	2 cut(s)	421, 674
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	293, 663
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	293, 663
FspBI	CTAG	4 cut(s)	141, 255, 471, 651
GluI	GCNGC	2 cut(s)	293, 663
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	2 cut(s)	275, 296
HgaI	GACGC	1 cut(s)	643
Hin1II	CATG	2 cut(s)	425, 678
HinfI	GANTC	9 cut(s)	76, 245, 271, 287, 397, 402, 436, 520, 563
HpaII	CCGG	2 cut(s)	275, 296
HphI	GGTGA	2 cut(s)	38, 310
Hpy166II	GTNNAC	3 cut(s)	195, 504, 672
Hpy188I	TCNGA	4 cut(s)	73, 286, 358, 562
Hpy188III	TCNNGA	9 cut(s)	124, 255, 366, 386, 394, 422, 433, 548, 575
Hpy8I	GTNNAC	3 cut(s)	195, 504, 672
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	1 cut(s)	602
HpyF3I	CTNAG	2 cut(s)	357, 630
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	2 cut(s)	425, 678
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	8 cut(s)	3, 182, 257, 388, 418, 427, 540, 544
LpnPI	CCDG	5 cut(s)	55, 288, 309, 553, 580
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	4 cut(s)	141, 255, 471, 651
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	8 cut(s)	5, 184, 259, 390, 420, 429, 542, 546
MboI	GATC	8 cut(s)	3, 182, 257, 388, 418, 427, 540, 544
MboII	GAAGA	6 cut(s)	124, 170, 313, 325, 336, 339
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	388, 427
MluCI	AATT	3 cut(s)	29, 164, 336
MlyI	GAGTC	3 cut(s)	411, 445, 514
MseI	TTAA	1 cut(s)	51
MspI	CCGG	2 cut(s)	275, 296
MspR9I	CCNGG	1 cut(s)	568
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	568
MvnI	CGCG	1 cut(s)	199
NdeII	GATC	8 cut(s)	3, 182, 257, 388, 418, 427, 540, 544
NlaIII	CATG	2 cut(s)	425, 678
NspV	TTCGAA	1 cut(s)	532
PaeR7I	CTCGAG	2 cut(s)	522, 548
PagI	TCATGA	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	529
PfeI	GAWTC	6 cut(s)	76, 245, 271, 287, 397, 563
PkrI	GCNGC	2 cut(s)	294, 664
Ple19I	CGATCG	1 cut(s)	543
PleI	GAGTC	3 cut(s)	410, 444, 514
PpsI	GAGTC	3 cut(s)	410, 444, 514
Psp1406I	AACGTT	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspPI	GGNCC	1 cut(s)	621
PspXI	VCTCGAGB	1 cut(s)	522
PsuI	RGATCY	2 cut(s)	388, 427
PvuI	CGATCG	1 cut(s)	543
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	293, 663
Sau3AI	GATC	8 cut(s)	3, 182, 257, 388, 418, 427, 540, 544
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	3 cut(s)	411, 445, 514
ScrFI	CCNGG	1 cut(s)	568
SetI	ASST	7 cut(s)	134, 194, 472, 491, 514, 529, 558
SfaNI	GCATC	1 cut(s)	580
Sfr274I	CTCGAG	2 cut(s)	522, 548
SfuI	TTCGAA	1 cut(s)	532
SgrAI	CRCCGGYG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	621
SlaI	CTCGAG	2 cut(s)	522, 548
SmlI	CTYRAG	5 cut(s)	371, 384, 431, 522, 548
SmoI	CTYRAG	5 cut(s)	371, 384, 431, 522, 548
Sse9I	AATT	3 cut(s)	29, 164, 336
SsiI	CCGC	2 cut(s)	293, 662
SspMI	CTAG	4 cut(s)	141, 255, 471, 651
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	624
TaiI	ACGT	1 cut(s)	491
TasI	AATT	3 cut(s)	29, 164, 336
TauI	GCSGC	2 cut(s)	295, 665
TfiI	GAWTC	6 cut(s)	76, 245, 271, 287, 397, 563
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	2 cut(s)	49, 192
TspDTI	ATGAA	2 cut(s)	10, 339
TspRI	CASTG	2 cut(s)	49, 192
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	254
XhoI	CTCGAG	2 cut(s)	522, 548
XspI	CTAG	4 cut(s)	141, 255, 471, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.