Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003884.1

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

7652 .. 8935

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003884.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgcttccccaccgactttcgcgtctacacctccccatccccaccgtccacctgtactcctctccacgtgtcaccatcccaccacctcgtccacttcccctgaccgtcaccctatcacctccccactaccgactcagaccgaccatatcgtccacgtcaccgcctgccccacacgtgctccacagcagccccttccttttcggcacgtgtcacgttcaaacggctagttttcgctcttgcgtttcgttcggaggaggaggagaagggtttgttcgagctttggggaggaagaggatagaaatcccggatgcggaggattcgtattcgggtttgagtcccaagactccattgaagaagcagaggagtgagtgtttcgctttcgatttcgatttcgagggtgaaaggtctaaacttgaagctctgcctcaggagattctgattaagattctgtgtggagttgagcatgaggatcttaaacagctgttccatgtatccaaggcggttagagaagcgactcttattgcaaaacagttgcattttgcttacagcacacctagaaagattcgagcttttcgaaccaagattgatttttcggagtcaaatgatgaattggaagagattgaagctccgaatgctccgaggcagcagaggctgcatagggcgctgccgagccggaaaaagcttgaagagatatcggtcaacttattggattcactggaggaaggaatgagaagagggctcttcatggatgaagatgatgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

254

Amino Acids

28.76

Weight (kDa)

8.34

Isoelectric Point (pI)

67.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	21, 148
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	22
AciI	CCGC	3 cut(s)	161, 311, 500
AclWI	GGATC	1 cut(s)	477
AcvI	CACGTG	3 cut(s)	68, 175, 207
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	3 cut(s)	67, 172, 206
AgsI	TTSAA	5 cut(s)	218, 352, 416, 623, 686
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	6 cut(s)	278, 419, 481, 569, 626, 682
AluI	AGCT	6 cut(s)	278, 419, 481, 569, 626, 682
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	477
AlwNI	CAGNNNCTG	1 cut(s)	652
ApeKI	GCWGC	4 cut(s)	186, 643, 652, 664
AspLEI	GCGC	1 cut(s)	664
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	5 cut(s)	64, 100, 108, 150, 410
AsuII	TTCGAA	1 cut(s)	574
AxyI	CCTNAGG	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	741
BbrPI	CACGTG	3 cut(s)	68, 175, 207
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	198, 639, 651, 655
BccI	CCATC	2 cut(s)	44, 83
BceAI	ACGGC	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	305
BfaI	CTAG	2 cut(s)	225, 555
BfoI	RGCGCY	1 cut(s)	665
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	4 cut(s)	187, 644, 653, 665
BlsI	GCNGC	4 cut(s)	188, 645, 654, 666
Bme1390I	CCNGG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	737
Bpu14I	TTCGAA	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	305
BsaAI	YACGTR	3 cut(s)	68, 175, 207
BsaBI	GATNNNNATC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	495, 638
BsaXI	ACNNNNNCTCC	8 cut(s)	41, 71, 162, 192, 305, 335, 355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	720
Bse21I	CCTNAGG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	495, 638
BseGI	GGATG	4 cut(s)	36, 75, 313, 754
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	148, 440
BseNI	ACTGG	1 cut(s)	720
BseRI	GAGGAG	5 cut(s)	49, 267, 270, 273, 376
BseXI	GCAGC	4 cut(s)	198, 639, 651, 655
Bsh1236I	CGCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	305, 673
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	637
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	180, 741
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	3 cut(s)	161, 311, 500
BspCNI	CTCAG	2 cut(s)	147, 439
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	477
BspQI	GCTCTTC	1 cut(s)	746
BspT104I	TTCGAA	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	720
BssECI	CCNNGG	2 cut(s)	495, 638
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	3 cut(s)	46, 106, 531
Bst6I	CTCTTC	5 cut(s)	284, 609, 681, 727, 746
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstBAI	YACGTR	3 cut(s)	68, 175, 207
BstBI	TTCGAA	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	134, 426
BstF5I	GGATG	4 cut(s)	36, 75, 313, 754
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	1 cut(s)	472
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	4 cut(s)	632, 649, 652, 661
BstSCI	CCNGG	1 cut(s)	303
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	4 cut(s)	198, 639, 651, 655
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
Bsu36I	CCTNAGG	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	502
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	36, 75, 313, 754
BtsIMutI	CAGTG	1 cut(s)	713
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	652
CfoI	GCGC	1 cut(s)	664
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	3 cut(s)	464, 488, 745
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	134, 426
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
DrdI	GACNNNNNNGTC	2 cut(s)	21, 148
DseDI	GACNNNNNNGTC	2 cut(s)	21, 148
Eam1104I	CTCTTC	5 cut(s)	284, 609, 681, 727, 746
EarI	CTCTTC	5 cut(s)	284, 609, 681, 727, 746
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	741
Eco32I	GATATC	1 cut(s)	693
Eco72I	CACGTG	3 cut(s)	68, 175, 207
Eco81I	CCTNAGG	1 cut(s)	426
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	3 cut(s)	467, 491, 748
FaiI	YATR	5 cut(s)	146, 465, 489, 657, 746
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	3 cut(s)	463, 487, 744
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	187, 644, 653, 665
FokI	GGATG	4 cut(s)	23, 62, 320, 761
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	4 cut(s)	187, 644, 653, 665
FspBI	CTAG	2 cut(s)	225, 555
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	4 cut(s)	187, 644, 653, 665
GsuI	CTGGAG	1 cut(s)	737
HaeII	RGCGCY	1 cut(s)	665
HapII	CCGG	2 cut(s)	305, 673
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	3 cut(s)	467, 491, 748
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	680
HpaII	CCGG	2 cut(s)	305, 673
HphI	GGTGA	5 cut(s)	64, 100, 108, 150, 410
Hpy166II	GTNNAC	5 cut(s)	26, 49, 92, 153, 700
Hpy188I	TCNGA	6 cut(s)	137, 251, 438, 595, 630, 639
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	5 cut(s)	26, 49, 92, 153, 700
HpyAV	CCTTC	3 cut(s)	202, 257, 716
HpyCH4III	ACNGT	3 cut(s)	46, 106, 531
HpyCH4IV	ACGT	5 cut(s)	67, 155, 174, 206, 213
HpyCH4V	TGCA	3 cut(s)	524, 535, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	632, 649, 652, 661
HpyF3I	CTNAG	2 cut(s)	134, 426
HpySE526I	ACGT	5 cut(s)	67, 155, 174, 206, 213
Hsp92II	CATG	3 cut(s)	467, 491, 748
HspAI	GCGC	1 cut(s)	662
Kzo9I	GATC	1 cut(s)	469
LguI	GCTCTTC	1 cut(s)	746
LmnI	GCTCC	3 cut(s)	183, 631, 640
LpnPI	CCDG	7 cut(s)	65, 113, 177, 318, 413, 686, 701
Lsp1109I	GCAGC	4 cut(s)	198, 639, 651, 655
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	225, 555
MaeII	ACGT	5 cut(s)	67, 155, 174, 206, 213
MaeIII	GTNAC	4 cut(s)	70, 106, 156, 209
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	7 cut(s)	301, 364, 626, 698, 733, 744, 764
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	2 cut(s)	180, 741
MluCI	AATT	1 cut(s)	608
MlyI	GAGTC	5 cut(s)	126, 337, 343, 508, 605
MseI	TTAA	2 cut(s)	441, 474
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	2 cut(s)	305, 673
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	637
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	4 cut(s)	632, 649, 652, 661
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	3 cut(s)	467, 491, 748
NmeAIII	GCCGAG	1 cut(s)	693
NmuCI	GTSAC	4 cut(s)	70, 106, 156, 209
NspV	TTCGAA	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PctI	GAATGC	1 cut(s)	637
PfeI	GAWTC	5 cut(s)	317, 433, 445, 562, 710
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	188, 645, 654, 666
PleI	GAGTC	5 cut(s)	126, 337, 342, 508, 604
PmaCI	CACGTG	3 cut(s)	68, 175, 207
PmlI	CACGTG	3 cut(s)	68, 175, 207
PpsI	GAGTC	5 cut(s)	126, 337, 342, 508, 604
Ppu21I	YACGTR	3 cut(s)	68, 175, 207
PspCI	CACGTG	3 cut(s)	68, 175, 207
PstNI	CAGNNNCTG	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	746
SaqAI	TTAA	2 cut(s)	441, 474
SatI	GCNGC	4 cut(s)	187, 644, 653, 665
Sau3AI	GATC	1 cut(s)	469
SchI	GAGTC	5 cut(s)	126, 337, 343, 508, 605
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	180, 741
SfaNI	GCATC	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	574
Sse9I	AATT	1 cut(s)	608
SsiI	CCGC	3 cut(s)	161, 311, 500
SspMI	CTAG	2 cut(s)	225, 555
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	46, 106, 531
TaiI	ACGT	5 cut(s)	70, 158, 177, 209, 216
TaqI	TCGA	6 cut(s)	274, 381, 387, 393, 565, 574
TaqII	GACCGA	2 cut(s)	154, 685
TasI	AATT	1 cut(s)	608
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	5 cut(s)	317, 433, 445, 562, 710
Tru1I	TTAA	2 cut(s)	441, 474
Tru9I	TTAA	2 cut(s)	441, 474
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	4 cut(s)	70, 106, 156, 209
TseI	GCWGC	4 cut(s)	186, 643, 652, 664
Tsp45I	GTSAC	4 cut(s)	70, 106, 156, 209
TspDTI	ATGAA	3 cut(s)	621, 733, 765
TspRI	CASTG	1 cut(s)	720
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	2 cut(s)	225, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.