Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

53437173 .. 53437907

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTTTGGGAAAGAATTGCCGGAGTAGTTCACTGAAATGCAGCGTTTCGTCCGGAGGAGGAGGAGGAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCCGGATGCGGAGGATTCCAATTCGGGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCCAGTGTTTCGCTTTTGATTTCGGTTTCGAGGGTGAAAGTTCCAAACTTGAAGCTCTGCCTCGGGAGATTCTGATTAAGATTCTGTGTGGAGTTGATCATGAGGATCTTAAACAGCTTTTCAGTGTATCCAAGGCGATTAGAGAAGCGACTCTTATTGCGAAACAGTTGCATTTTGCTTACAGCACACCAACAAAGATTCCAGCTTTTCGAACCAAGATTGATTTTTCGGAGTCAAATGATGAATTGGATGAGATTGAAGCTCCGAATGCTCCGAGGCTGCATAGGGCGCTTCCGAGCCGGAAAAAGCTTGAAGAGATATCTGTTAACTTATTGGATTCATTGGAGGAAGGAATCAGAAGAGGGCTTTTCATGGATGAAGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

185

Amino Acids

20.48

Weight (kDa)

5.76

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	154, 218, 425, 479
AluBI	AGCT	6 cut(s)	86, 221, 283, 371, 428, 475
AluI	AGCT	6 cut(s)	86, 221, 283, 371, 428, 475
AlwI	GGATC	1 cut(s)	279
Ama87I	CYCGRG	1 cut(s)	228
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	136
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	42, 445
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	136, 137
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	54, 432
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciVI	GTATCC	1 cut(s)	304
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	2 cut(s)	43, 446
BlsI	GCNGC	2 cut(s)	44, 447
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	136, 137
BmiI	GGNNCC	3 cut(s)	138, 139, 167
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	227, 297, 440
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	227, 297, 440
BseGI	GGATG	3 cut(s)	121, 421, 547
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	5 cut(s)	72, 75, 78, 81, 178
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	54, 432
BshFI	GGCC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	4 cut(s)	22, 54, 113, 466
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	376
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	262, 271
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	3 cut(s)	138, 139, 167
BspPI	GGATC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	227, 297, 440
BssMI	GATC	2 cut(s)	262, 271
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	3 cut(s)	92, 474, 520
BstBI	TTCGAA	1 cut(s)	376
BstF5I	GGATG	3 cut(s)	121, 421, 547
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	265, 274
BstMBI	GATC	2 cut(s)	262, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 454
BstSCI	CCNGG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	54, 432
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	121, 421, 547
BtsIMutI	CAGTG	3 cut(s)	32, 176, 295
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	136, 137
CviAII	CATG	2 cut(s)	266, 538
DpnI	GATC	2 cut(s)	264, 273
DpnII	GATC	2 cut(s)	262, 271
Eam1104I	CTCTTC	3 cut(s)	92, 474, 520
EarI	CTCTTC	3 cut(s)	92, 474, 520
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	269, 541
FaiI	YATR	3 cut(s)	267, 450, 539
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	2 cut(s)	265, 537
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	43, 446
FokI	GGATG	3 cut(s)	128, 428, 554
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	43, 446
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	2 cut(s)	43, 446
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	4 cut(s)	22, 54, 113, 466
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	269, 541
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	9 cut(s)	125, 145, 235, 247, 316, 364, 398, 503, 519
HpaI	GTTAAC	1 cut(s)	493
HpaII	CCGG	4 cut(s)	22, 54, 113, 466
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	32, 493
Hpy188I	TCNGA	6 cut(s)	240, 397, 432, 441, 462, 524
Hpy188III	TCNNGA	3 cut(s)	54, 230, 266
Hpy8I	GTNNAC	2 cut(s)	32, 493
HpyAV	CCTTC	2 cut(s)	65, 509
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	42, 337, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 454
Hsp92II	CATG	2 cut(s)	269, 541
HspAI	GCGC	1 cut(s)	455
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	262, 271
LmnI	GCTCC	3 cut(s)	165, 433, 442
LpnPI	CCDG	6 cut(s)	35, 67, 126, 182, 381, 479
Lsp1109I	GCAGC	2 cut(s)	54, 432
LweI	GCATC	1 cut(s)	106
MalI	GATC	2 cut(s)	264, 273
MboI	GATC	2 cut(s)	262, 271
MboII	GAAGA	5 cut(s)	109, 166, 491, 537, 557
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	3 cut(s)	16, 130, 410
MlyI	GAGTC	3 cut(s)	139, 310, 407
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	3 cut(s)	243, 276, 492
MslI	CAYNNNNRTG	1 cut(s)	37
MspI	CCGG	4 cut(s)	22, 54, 113, 466
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	434, 454
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	262, 271
NlaIII	CATG	2 cut(s)	269, 541
NlaIV	GGNNCC	3 cut(s)	138, 139, 167
NspV	TTCGAA	1 cut(s)	376
PagI	TCATGA	1 cut(s)	265
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	6 cut(s)	125, 235, 247, 364, 503, 519
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	44, 447
PleI	GAGTC	3 cut(s)	139, 310, 406
PpsI	GAGTC	3 cut(s)	139, 310, 406
PspN4I	GGNNCC	3 cut(s)	138, 139, 167
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	136, 137
PsuI	RGATCY	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	243, 276, 492
SatI	GCNGC	2 cut(s)	43, 446
Sau3AI	GATC	2 cut(s)	262, 271
Sau96I	GGNCC	2 cut(s)	136, 137
SchI	GAGTC	3 cut(s)	139, 310, 407
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	6 cut(s)	88, 223, 285, 373, 430, 477
SfaNI	GCATC	1 cut(s)	106
SfuI	TTCGAA	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	37
Sse9I	AATT	3 cut(s)	16, 130, 410
SsiI	CCGC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	82, 195, 376
TasI	AATT	3 cut(s)	16, 130, 410
TfiI	GAWTC	6 cut(s)	125, 235, 247, 364, 503, 519
Tru1I	TTAA	3 cut(s)	243, 276, 492
Tru9I	TTAA	3 cut(s)	243, 276, 492
TscAI	CASTG	3 cut(s)	39, 176, 295
TseI	GCWGC	2 cut(s)	42, 445
TspDTI	ATGAA	4 cut(s)	423, 495, 526, 558
TspRI	CASTG	3 cut(s)	39, 176, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.