Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

38987977 .. 38989402

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1303400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGTTGGGAAAGAAGTGCAAGAGTTGCTTGAAAACGAAGCGTGGCAGCGGCGGTGCTGTTGCGGCGGAGGCGGAGCCGATGATGGAGTTAGGGTTTGTGAAGTACACGCGAGCTTTGGGGAGGAAGAGGATTGGGATTTCTAACAATGGCGAGGAGGCATCGCCGGCTGATTTGTATCCCAATACTCCATTGAAGAAGCAGCGGAGTGGGAAGATGATTTGGGAATCGGAAACTGCCGCCTCCTCCGCCCTAGAAGCTCTGCCTCAGGAGATTCTGATTAAGGTTGTGTGTGGAGTCGATCACGATGATTTGAAGCGGCTTTTCCGTGTATCGAAAGCGATTAGAGAAGCAACTCTGGTTGCGAAGCAGTGGCATTTTGCTTACAGCACGCCTTCGAAAACCCTTGCTTTCCGAACCGCCATTGATTTATCAGATTCGAATAGCTCTCCGGACGAGATTGAAGCCCCGAATGCTCCAAAACAGTGGAGGCAGATGCACAGGAAGTTGCCTAACCAGAAGAAGCTTGCTGAGTTGTCTGTGAACTTGTTTGCCTCATGGGACGACGAGGCGGAGGAGGATCAGGGGACTCGAAAAGGGCTGTTCATGGAGGAAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

208

Amino Acids

23.02

Weight (kDa)

8.35

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	112
AccIII	TCCGGA	1 cut(s)	451
AclWI	GGATC	1 cut(s)	588
AfaI	GTAC	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	34, 196, 316, 464
AluBI	AGCT	4 cut(s)	116, 260, 447, 526
AluI	AGCT	4 cut(s)	116, 260, 447, 526
AlwI	GGATC	1 cut(s)	588
Aor13HI	TCCGGA	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	48, 202
AsuII	TTCGAA	2 cut(s)	398, 440
AxyI	CCTNAGG	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	60, 214
BccI	CCATC	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	6 cut(s)	49, 52, 66, 203, 240, 320
BlsI	GCNGC	6 cut(s)	50, 53, 67, 204, 241, 321
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	170, 486
Bpu14I	TTCGAA	2 cut(s)	398, 440
BsaBI	GATNNNNATC	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	451
BseJI	GATNNNNATC	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	281, 522
BseRI	GAGGAG	3 cut(s)	170, 235, 590
BseXI	GCAGC	2 cut(s)	60, 214
Bsh1236I	CGCG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	167, 452
BslFI	GGGAC	2 cut(s)	575, 601
BsmFI	GGGAC	2 cut(s)	575, 601
BsmI	GAATGC	1 cut(s)	478
Bsp119I	TTCGAA	2 cut(s)	398, 440
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	301, 580
BspCNI	CTCAG	2 cut(s)	280, 523
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	588
BspT104I	TTCGAA	2 cut(s)	398, 440
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
BssMI	GATC	2 cut(s)	301, 580
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstBI	TTCGAA	2 cut(s)	398, 440
BstC8I	GCNNGC	4 cut(s)	114, 168, 392, 528
BstDEI	CTNAG	2 cut(s)	267, 531
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	304, 583
BstMBI	GATC	2 cut(s)	301, 580
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 65, 71, 167, 248, 257, 473
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	60, 214
BstXI	CCANNNNNNTGG	1 cut(s)	486
Bsu36I	CCTNAGG	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	377, 491
Cac8I	GCNNGC	4 cut(s)	114, 168, 392, 528
Cfr10I	RCCGGY	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	558, 607
CviJI	RGCY	9 cut(s)	79, 116, 170, 260, 322, 447, 467, 526, 601
CviKI_1	RGCY	9 cut(s)	79, 116, 170, 260, 322, 447, 467, 526, 601
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	267, 531
DpnI	GATC	2 cut(s)	303, 582
DpnII	GATC	2 cut(s)	301, 580
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	4 cut(s)	83, 89, 238, 587
Eco81I	CCTNAGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	561, 610
FaiI	YATR	2 cut(s)	559, 608
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	2 cut(s)	575, 601
FatI	CATG	2 cut(s)	557, 606
Fnu4HI	GCNGC	6 cut(s)	49, 52, 66, 203, 240, 320
Fsp4HI	GCNGC	6 cut(s)	49, 52, 66, 203, 240, 320
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	6 cut(s)	49, 52, 66, 203, 240, 320
HapII	CCGG	2 cut(s)	167, 452
Hin1II	CATG	2 cut(s)	561, 610
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	5 cut(s)	227, 274, 297, 437, 589
HpaII	CCGG	2 cut(s)	167, 452
Hpy166II	GTNNAC	2 cut(s)	108, 544
Hpy188I	TCNGA	4 cut(s)	232, 279, 416, 436
Hpy188III	TCNNGA	3 cut(s)	269, 305, 452
Hpy8I	GTNNAC	2 cut(s)	108, 544
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4V	TGCA	2 cut(s)	21, 499
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 65, 71, 167, 248, 257, 473
HpyF3I	CTNAG	2 cut(s)	267, 531
Hsp92II	CATG	2 cut(s)	561, 610
Kpn2I	TCCGGA	1 cut(s)	451
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	301, 580
LmnI	GCTCC	2 cut(s)	76, 481
LpnPI	CCDG	7 cut(s)	180, 254, 344, 465, 487, 530, 569
Lsp1109I	GCAGC	2 cut(s)	60, 214
LweI	GCATC	2 cut(s)	170, 486
MaeI	CTAG	1 cut(s)	254
MalI	GATC	2 cut(s)	303, 582
MboI	GATC	2 cut(s)	301, 580
MboII	GAAGA	4 cut(s)	139, 208, 226, 532
MlyI	GAGTC	2 cut(s)	306, 583
MroI	TCCGGA	1 cut(s)	451
MroNI	GCCGGC	1 cut(s)	166
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	51, 205
MspI	CCGG	2 cut(s)	167, 452
Mva1269I	GAATGC	1 cut(s)	478
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	7 cut(s)	27, 65, 71, 167, 248, 257, 473
NaeI	GCCGGC	1 cut(s)	168
NdeII	GATC	2 cut(s)	301, 580
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	561, 610
NlaIV	GGNNCC	1 cut(s)	78
NspV	TTCGAA	2 cut(s)	398, 440
PctI	GAATGC	1 cut(s)	478
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	227, 274, 437
PkrI	GCNGC	6 cut(s)	50, 53, 67, 204, 241, 321
PleI	GAGTC	2 cut(s)	305, 583
PpsI	GAGTC	2 cut(s)	305, 583
PspN4I	GGNNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	6 cut(s)	49, 52, 66, 203, 240, 320
Sau3AI	GATC	2 cut(s)	301, 580
SchI	GAGTC	2 cut(s)	306, 583
SetI	ASST	5 cut(s)	118, 262, 288, 449, 528
SfaNI	GCATC	2 cut(s)	170, 486
SfuI	TTCGAA	2 cut(s)	398, 440
SspMI	CTAG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	486
TaqI	TCGA	5 cut(s)	300, 335, 398, 440, 592
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	4 cut(s)	54, 68, 242, 322
TfiI	GAWTC	3 cut(s)	227, 274, 437
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	377, 491
TseI	GCWGC	2 cut(s)	48, 202
TspDTI	ATGAA	1 cut(s)	595
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	377, 491
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.